mRNA_P-lacustris_contig1025.316.1 (mRNA) Pleurocladia lacustris SAG_25_93
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1025.316.1 vs. uniprot
Match: D8LK98_ECTSI (Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK98_ECTSI) HSP 1 Score: 597 bits (1539), Expect = 3.320e-186 Identity = 403/504 (79.96%), Postives = 437/504 (86.71%), Query Frame = 2 Query: 2867 RYMAIVEAANVRSALDNSSTSENTDASPSEDDGGMMAEILTDRLMEVCSKMEQVVTSPEDELSDGPADSVAVGGGSGVHKRRPSSRRRQHSNMSSRTLHSTVG-DIEENDADSDEGSTVDAGAAARKLRRERLRKRTKQSRKLSSVLAVPKDDRGEVINLHTAAYNGEREGLTAYIAQGGDLEVRDKFQATALMLCTERGHNDMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATDPNIRRVLRNEEFVRYSGENFDLLAAVEVNDTTALANFIAMGQEACGFPHNPNAVAVAAKRLRLDRVGRGGMSAAHLAAFHGYADSLCLLLEAGADANAVCDDGETPLHTACNGGSLLCASLLLDHGANPLATDGKGLVPCEKHIAGGRQEMKQLLESKAFQATPANLLSLRSDLAAVALQIDAEEDLFVRKGVAIKYLRRALKKKDXXXXXXXXXXXXXXXXXXXXADRMEGVHRLLKGI 4375
RYMAIVEAANV+SALDNSSTSE+TD SPSEDDGGMMAEILTDRLMEVCSKMEQ SPE +LSDG A+++A+GGG GVHKRRPS RRRQ SNMS+RTLHS G + EE DADSDEGS +DAGAAARKLRRERLRKR KQSRK+SSVLAVPKDDRGEVI++HTAAYNG+++ L AYI+QGGDLE+RD+FQATALMLC ERGH M XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ATDP IRR+LR E+ VR+SGENFDLL AVEVNDT A+ANFIAMGQEACG+PHNPNAVAVA+KRLRL+R GRGGMSA HLAAFHGYADSL LLLEAG+D NAV DDGETPLHTACNGGS+L CEKHIAGGRQEMK LLE+KAFQATPANLL+LR+DLA VALQIDAEEDLFVRKGVAIKYLR+ALKKKD XXXXXXXXXXXXXXX ADRME VH+LLKG+
Sbjct: 662 RYMAIVEAANVKSALDNSSTSEHTDTSPSEDDGGMMAEILTDRLMEVCSKMEQSAASPEADLSDGAAEAMALGGG-GVHKRRPS-RRRQLSNMSNRTLHSVAGGEGEEEDADSDEGSVMDAGAAARKLRRERLRKRAKQSRKMSSVLAVPKDDRGEVIHVHTAAYNGKQDVLKAYISQGGDLEIRDQFQATALMLCAERGHTQMVDDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLATDPAIRRILRIEQMVRFSGENFDLLGAVEVNDTMAVANFIAMGQEACGYPHNPNAVAVASKRLRLNRTGRGGMSAVHLAAFHGYADSLRLLLEAGSDPNAVSDDGETPLHTACNGGSILXXXXXXXXXXXXXXXXXXXXXXCEKHIAGGRQEMKHLLEAKAFQATPANLLALRADLAEVALQIDAEEDLFVRKGVAIKYLRKALKKKDVDLGXXXXXXXXXXXXXXXLADRMESVHKLLKGV 1163
BLAST of mRNA_P-lacustris_contig1025.316.1 vs. uniprot
Match: D8LK26_ECTSI (Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK26_ECTSI) HSP 1 Score: 76.6 bits (187), Expect = 1.340e-10 Identity = 113/313 (36.10%), Postives = 157/313 (50.16%), Query Frame = 2 Query: 3335 INLHTAAYNGEREGLTAYIAQGGDLEVRDKFQATALMLCTERGHNDMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATDPNIRRVLRNEEFVRYSGENFDLLAAVEVNDTTALANFIAMGQEACGFPHNPNAVAVAAKRLRLDRVGRGGMSAAHLAAFHGYADSLCLLLEAGADANAVCDDGETPLHTACNGGSLLCASLLLDHGANPLATDGKGLVPCEKHIAGGRQEMKQLLESKAFQATPANLLSLRSDLAAVALQIDAEEDLFVRKGVAIKYLRRALKKKD 4273
++ H AAY G+ L Y GGDLE RD ++AT L+L E+GH XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A+ I +L +E G D++ AVE ND L +FI+ + L++ G+ M+ H+A+F+G D + +LL+ G G P E+ ++QLLE++++++ P N+ +R A+ L++D E +FV+K +AIK LR A++ KD
Sbjct: 66 VHAHVAAYEGDLGKLRRYSEAGGDLEKRDSYRATPLLLAAEKGHEACVAYLLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRGRIPKRLASRKEISNLLAAKETESKLG--VDVIEAVERNDVAGLKSFISGKGD-------------------LNQKGKNDMTPLHVASFNGRTDIVRMLLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLGRTPAERSTG---TSVQQLLEAESYKSIPKNIAQIRKQTEALQLRVDTNESIFVQKAIAIKGLRIAIEDKD 354
BLAST of mRNA_P-lacustris_contig1025.316.1 vs. uniprot
Match: B8AI94_ORYSI (Uncharacterized protein n=2 Tax=Oryza sativa TaxID=4530 RepID=B8AI94_ORYSI) HSP 1 Score: 61.2 bits (147), Expect = 6.140e-6 Identity = 41/101 (40.59%), Postives = 53/101 (52.48%), Query Frame = 2 Query: 3842 LDRVGRGGMSAAHLAAFHGYADSLC--LLLEAGADANAVCDDGETPLHTACNGGSLLCASLLLDHGANPLATDGKGLVPCEKHIAGGRQEMKQLLESKAFQ 4138
++ V GG A HLAA G ++C L+ E DANA+ D GETPL A NG ++ LLDHGA+P D KG P G + +LL +K Q
Sbjct: 63 VEAVREGGAGALHLAAGAGKL-AVCRYLVEELRVDANAIYDQGETPLAYAVNGANVATVRYLLDHGAHPEKADNKGFTPLHFAAEEGYCNVVELLLAKGAQ 162
BLAST of mRNA_P-lacustris_contig1025.316.1 vs. uniprot
Match: I1P0K6_ORYGL (Uncharacterized protein n=1 Tax=Oryza glaberrima TaxID=4538 RepID=I1P0K6_ORYGL) HSP 1 Score: 57.8 bits (138), Expect = 3.650e-5 Identity = 40/101 (39.60%), Postives = 52/101 (51.49%), Query Frame = 2 Query: 3842 LDRVGRGGMSAAHLAAFHGYADSLC--LLLEAGADANAVCDDGETPLHTACNGGSLLCASLLLDHGANPLATDGKGLVPCEKHIAGGRQEMKQLLESKAFQ 4138
++ V G A HLAA G ++C L+ E DANA+ D GETPL A NG ++ LLDHGA+P D KG P G + +LL +K Q
Sbjct: 63 VEAVRECGAGALHLAAGTGKL-AVCRYLVEELRVDANAIYDQGETPLAYAVNGANVATVRYLLDHGAHPEKADNKGFTPLHFAAEEGYCNVVELLLAKGAQ 162 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1025.316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1025.316.1 >prot_P-lacustris_contig1025.316.1 ID=prot_P-lacustris_contig1025.316.1|Name=mRNA_P-lacustris_contig1025.316.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=625bp MAMRRARGAPSPADEDVKDEEEEKKSEDESDMDSDASSSKGGAGNYAYFSback to top mRNA from alignment at P-lacustris_contig1025:5138..15225+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1025.316.1 ID=mRNA_P-lacustris_contig1025.316.1|Name=mRNA_P-lacustris_contig1025.316.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=10088bp|location=Sequence derived from alignment at P-lacustris_contig1025:5138..15225+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1025:5138..15225+ >mRNA_P-lacustris_contig1025.316.1 ID=mRNA_P-lacustris_contig1025.316.1|Name=mRNA_P-lacustris_contig1025.316.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=3750bp|location=Sequence derived from alignment at P-lacustris_contig1025:5138..15225+ (Pleurocladia lacustris SAG_25_93)back to top |