Homology
BLAST of mRNA_P-lacustris_contig1024.315.1 vs. uniprot
Match:
A0A6H5KJJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJJ2_9PHAE)
HSP 1 Score: 254 bits (650), Expect = 1.440e-81
Identity = 125/147 (85.03%), Postives = 132/147 (89.80%), Query Frame = 1
Query: 181 MWAEVIKKENARIGVPHKFFLNPNKLVFIARKPTEVDPRTYDADSLSTDNQGSTDSPPHMEKTEEGGDNEEATLDASSAKLWKTESQGWGSFYAKKRP-GADPFSSQRSCWRKPRCKCDVTEYGDRYCEMTGVSPYAKKNLDSAPKP 618
MWAEVIKKENA IGVPH+FFLNPNKLVFIARKPTEVDPRTY+ADSLST +QGS +SP + EEG ++EATLDASSAKLWKTESQ WGSFYAKKRP G DPFSSQRSCWRKPR KCDVTEYGDRYCEMTGVSPYAKKNLDSA KP
Sbjct: 1 MWAEVIKKENATIGVPHRFFLNPNKLVFIARKPTEVDPRTYEADSLSTGHQGSLESPSRIRLAEEGDKSDEATLDASSAKLWKTESQRWGSFYAKKRPPGVDPFSSQRSCWRKPRSKCDVTEYGDRYCEMTGVSPYAKKNLDSATKP 147
BLAST of mRNA_P-lacustris_contig1024.315.1 vs. uniprot
Match:
D8LK45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK45_ECTSI)
HSP 1 Score: 103 bits (256), Expect = 8.850e-24
Identity = 49/54 (90.74%), Postives = 52/54 (96.30%), Query Frame = 1
Query: 172 RQAMWAEVIKKENARIGVPHKFFLNPNKLVFIARKPTEVDPRTYDADSLSTDNQ 333
RQAMWAEVIKKENA IGVPH+FFLNPNKLVFIARKPTEVDPRTY+ADSLST +Q
Sbjct: 14 RQAMWAEVIKKENATIGVPHRFFLNPNKLVFIARKPTEVDPRTYEADSLSTGHQ 67
BLAST of mRNA_P-lacustris_contig1024.315.1 vs. uniprot
Match:
A0A835Z8L4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8L4_9STRA)
HSP 1 Score: 67.8 bits (164), Expect = 5.610e-11
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query: 172 RQAMWAEVIKKENARIGVPHKFFLNPNKLVFIARKPTEVDPRTYDADSLS 321
R MW EVI KENA IG PH FFL+P+KL F+ RKPTEVDPR A++ +
Sbjct: 8 RNKMWVEVINKENAVIGRPHTFFLDPSKLCFLPRKPTEVDPRALAAEAAA 57
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1024.315.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 1.44e-81 / Id = 85.03 Expect = 8.85e-24 / Id = 90.74 Expect = 5.61e-11 / Id = 62.00 Sequence A0A6H5KJJ2_9PHAE D8LK45_ECTSI A0A835Z8L4_9STRA back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Ec32 ortholog description FAM183 family Ec32 ortholog Ec-06_008140.1 Exons 3 Model size 1132 Cds size 441 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815296.8399293-UTR-P-lacustris_contig1024:62940..63451 1622815296.8399293-UTR-P-lacustris_contig1024:62940..63451 Pleurocladia lacustris SAG_25_93 UTR P-lacustris_contig1024 62941..63451 - 1693493458.4051952-UTR-P-lacustris_contig1024:62940..63451 1693493458.4051952-UTR-P-lacustris_contig1024:62940..63451 Pleurocladia lacustris SAG_25_93 UTR P-lacustris_contig1024 62941..63451 - 1622815296.8797784-UTR-P-lacustris_contig1024:64427..64607 1622815296.8797784-UTR-P-lacustris_contig1024:64427..64607 Pleurocladia lacustris SAG_25_93 UTR P-lacustris_contig1024 64428..64607 - 1693493458.437497-UTR-P-lacustris_contig1024:64427..64607 1693493458.437497-UTR-P-lacustris_contig1024:64427..64607 Pleurocladia lacustris SAG_25_93 UTR P-lacustris_contig1024 64428..64607 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815296.8511226-CDS-P-lacustris_contig1024:63451..63518 1622815296.8511226-CDS-P-lacustris_contig1024:63451..63518 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1024 63452..63518 - 1693493458.4139564-CDS-P-lacustris_contig1024:63451..63518 1693493458.4139564-CDS-P-lacustris_contig1024:63451..63518 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1024 63452..63518 - 1622815296.8598943-CDS-P-lacustris_contig1024:63761..63982 1622815296.8598943-CDS-P-lacustris_contig1024:63761..63982 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1024 63762..63982 - 1693493458.4212828-CDS-P-lacustris_contig1024:63761..63982 1693493458.4212828-CDS-P-lacustris_contig1024:63761..63982 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1024 63762..63982 - 1622815296.8686152-CDS-P-lacustris_contig1024:64274..64427 1622815296.8686152-CDS-P-lacustris_contig1024:64274..64427 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1024 64275..64427 - 1693493458.429343-CDS-P-lacustris_contig1024:64274..64427 1693493458.429343-CDS-P-lacustris_contig1024:64274..64427 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1024 64275..64427 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1024.315.1
>prot_P-lacustris_contig1024.315.1 ID=prot_P-lacustris_contig1024.315.1|Name=mRNA_P-lacustris_contig1024.315.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=147bp
MWAEVIKKENARIGVPHKFFLNPNKLVFIARKPTEVDPRTYDADSLSTDN back to top mRNA from alignment at P-lacustris_contig1024:62941..64607-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1024.315.1 ID=mRNA_P-lacustris_contig1024.315.1|Name=mRNA_P-lacustris_contig1024.315.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1667bp|location=Sequence derived from alignment at P-lacustris_contig1024:62941..64607- (Pleurocladia lacustris SAG_25_93)GAACAACCCCAACAAGGGGACCAAGCACGCAGCAATGCCATCCAGAAGCT
CCAGCGCTGTGATACGTGTTGCTGCGAGGGGTCCGCGTTTGACCGTGCAT
ACAATAGTGCATGGTTCTACAACGTGGACCTGCATCTGCAAGTACTTTTT
GTCAACTTTAATTTCTTCCTCCGCCAGGCG ATGTGGGCAGAGGTGATTAA
AAAAGAGAACGCCAGGATCGGCGTGCCACACAAGTTCTTCCTCAACCCCA
ACAAGTTGGTGTTCATCGCCAGGAAGCCTACAGAGGTTGACCCGCGGACG
TATGACGCTGACTCTTTGTCGACAGATAACCAG GTAACAGCTTTTGCCTC
CGTCTCGTTCTATCGGTGTGTTGGCCGCAGCCTGTTTCAAAAACACGGAG
GTATTTCTTCCTTGCAATCCATTTTCCTGTTCAAAGAAGTACGAAGTTAC
ACAAATCAGACCGGGCGATCTGGTGCATGAGTAAGACAGTAGTACAAGAC
GTACACCGGAAATATATGTGTGTCAGGATACCGACTTGATACGAACTAGG
ATTTCCTGTTATGGCGACGTTGGTTTCACTATCTGTGTATGTAAACCCCG
AGCCCATACTGATTTGTTGTGCCAGGGCTCAACTGATTCTCCACCGCACA
TGGAAAAGACAGAAGAGGGCGGTGACAATGAGGAGGCCACCCTGGACGCC
AGTAGTGCCAAACTATGGAAAACGGAATCGCAGGGATGGGGCAGTTTTTA
CGCCAAGAAAAGGCCAGGGGCGGATCCTTTTAGCTCTCAGCGAAGTTGCT
GGAGAAAACCACGTTGCAAATGTGACGTTACGGAGTACGGGGACAG GTTC
GTCCACCTAGACAGCGGCGAGGTTCCGCCAACATGGCAAACGACGATCAA
ATATTTTTGGACGATTGTTGACAACCTTGTTTGTTTTGATATGGCTGATT
GTAAACAACCTTCGATTGTTTGGATATGGCGCTCGATAGAAATGGTGCTG
AGTGGCTTGAAATTTGTTGCGATACGTCAAAGCTGAACAACCTAATGCGG
CTCAGACATTGTGTGTTGCGCTCTCCTCTGCTTGCACAGGTACTGCGAGA
TGACAGGGGTCAGTCCCTACGCCAAAAAGAACTTGGACTCTGCGCCCAAA
CCCTGA AAAGCAGCAGGCGGGGGGGTGTTTTTTTCGTTCTCCTGTTCATG
AAGGGTTTGTGGGTGCTCCAGTCATTTTTCCAGCTTTCATCTACACGGGA
AATATGCAGGACCATGCCCTGGAAAGCTACCACCCAATGAACAATGCTTT
ATTGGTTGACTGGTATAGGTTGCACAGTACGCTTGAGCTTCGGGTCACGG
TGTCCTTCTACCTTTGGCAAATCACCGGGGTGGGATTTCGAAGCATAGAG
ACCGAGGCTTGCCTCACTCAGGATGTTTGTGTTCCAGAGCACTGTAAATA
TAGCTGATAACCGGCAGTACTCCAGCATCGGTTCTGGTCACCGCCAATGG
ACACAAGTGTGAAGTTCGCAAACCCAATAGAGTTGTATCGTATGGTTTAT
GTAAAGCAGCGACCAAATTTCTCATGATGCAACGGGGGGATTTGTATGTT
TAGCGCACGGACAACGCAACGAATGTTGAGCACAACGTCACTGCATTAGC
GTGGCTAGACTGACCGA back to top Coding sequence (CDS) from alignment at P-lacustris_contig1024:62941..64607-
>mRNA_P-lacustris_contig1024.315.1 ID=mRNA_P-lacustris_contig1024.315.1|Name=mRNA_P-lacustris_contig1024.315.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=882bp|location=Sequence derived from alignment at P-lacustris_contig1024:62941..64607- (Pleurocladia lacustris SAG_25_93) back to top