mRNA_P-lacustris_contig1024.313.1 (mRNA) Pleurocladia lacustris SAG_25_93
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1024.313.1 vs. uniprot
Match: D8LK47_ECTSI (PolyA_pol domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK47_ECTSI) HSP 1 Score: 670 bits (1729), Expect = 3.270e-229 Identity = 413/627 (65.87%), Postives = 449/627 (71.61%), Query Frame = 2 Query: 263 ISLDNCMGDDFAATVNTYLKSQGQDEGKVAVIEANPEQSKHLKTARMKLIGVWVDFVNLRTEVYSSESRIPEASLGTAEEDALRRDFTLNALFYNVNERKVEDKTGRGVDDLRDGIIRTPLSPMITFRDDPLRVLRAVRFAARFGFTLHEDLRAAAQNSEIQAALRTKVSRERVGAELCGMITGKMAQPGLALTLLQELGLAPAVYAPPEHLVPPA--GGVDWAYGAAVARAAARLLAFRSSVSSVTEVIEAEGKVGHPENH-----RSVKHAPMAAAPAA-DLANIGETRVEAGATSSGALTASRTDEDGNPSTQGIQEDNTTRGAEDRTSKWVKERSSDRKENVAPATLVRELFLCAALLPLAGLRHKAKKGKLGSAAHSVVAGSLKLKAKEAKNVEDILQLSQSFCTLANGCMA--SSTGASAADTN----IDGTDRKGGATFSRLSVGLAVRQAKELWPTCVDLCCAIDMCEQKHQGQLSPSSPXXXXA-----STNAMDPPDNRDQATGGAAFTGSVGDGARTDG----DDPAANKGVDLQEGSEDRAAIEKYTGLRQAVTNFGLERAWDMVPLARGDELMAELRLPKGPEIGKQMAKQASWQLEHPEGTREQCVAFLRATM 2074
I+LDNC G FA TVN YLKSQG+DEGKVAVIEANPEQSKHL+TARMK+ GVWVD VNLRTEVY S+SRIPEASLGTAEEDALRRDFTLNALFYNVNE KVEDKTGRGVDDLRDGIIRTPLSPMITFRDDPLRVLRAVRFAARFGF LHEDLRAAA++SEIQAAL TKVSRERVG ELCGMITGKMAQP LAL+LLQ+LGLA AVYAPPEHLVPP GG+DW GAAVARAAARLL FRSSV TE E E G P +V A AAA A E N S G G E R S K S D K+ AP TLVRELFLCAALLPLAG++HKAKKGKL SAAHSVVA SLKLK+KEAKNVEDIL L ++F LA+ +A +S G SA T +DGTDR+G ATFSRLSVGLAVRQAK+LWPTCVDLCCA++MCE + Q XXXX T P D+ +Q A D+P +EG ++RA I KY GLR+AV GLERAWDMVPLARG+ELMAEL+LPKGPEIGKQMAKQASWQLEHPEGTREQCVAFLRAT+
Sbjct: 99 IALDNCTGVAFAETVNAYLKSQGRDEGKVAVIEANPEQSKHLETARMKIRGVWVDLVNLRTEVYRSDSRIPEASLGTAEEDALRRDFTLNALFYNVNEGKVEDKTGRGVDDLRDGIIRTPLSPMITFRDDPLRVLRAVRFAARFGFALHEDLRAAARDSEIQAALGTKVSRERVGTELCGMITGKMAQPALALSLLQDLGLAAAVYAPPEHLVPPPVDGGIDWERGAAVARAAARLLEFRSSV---TEAGEEEVTDGAPXXXXXXAVETVAPAEGAAAEAGLXXXXXXXXXXXXXXXXXXXXXXXXGKEPANMSPLGG-------GGEGRVSMGGKPGSRDGKKE-APTTLVRELFLCAALLPLAGMKHKAKKGKLVSAAHSVVADSLKLKSKEAKNVEDILDLLKTFRPLADAYVAYPTSPGTSAVATKMEVEVDGTDREGRATFSRLSVGLAVRQAKQLWPTCVDLCCAVEMCEPQQQAPXXXXXXXXXXXXXXXXGTIFACPADHLEQTVEAAXXXXXXXXXXXXXXXXXXDEP-------FREGGKERAVIYKYAGLRKAVAGMGLERAWDMVPLARGNELMAELQLPKGPEIGKQMAKQASWQLEHPEGTREQCVAFLRATL 707
BLAST of mRNA_P-lacustris_contig1024.313.1 vs. uniprot
Match: A0A7S4D7V9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7V9_HETAK) HSP 1 Score: 251 bits (640), Expect = 1.350e-71 Identity = 124/209 (59.33%), Postives = 155/209 (74.16%), Query Frame = 2 Query: 263 ISLDNCMGDDFAATVNTYLKSQGQDEGKVAVIEANPEQSKHLKTARMKLIGVWVDFVNLRTEVYSSESRIPEASLGTAEEDALRRDFTLNALFYNVNERKVEDKTGRGVDDLRDGIIRTPLSPMITFRDDPLRVLRAVRFAARFGFTLHEDLRAAAQNSEIQAALRTKVSRERVGAELCGMITGKMAQPGLALTLLQELGLAPAVYAPP 889
+++DN G +FA+ VN YL QG++ K+ VI+ANP+QSKHL+TAR+K+ G WVD VNLRTE Y+ +SRIPE GTAEEDA RRDFT N+LFYN+NE K+ED TG+G DL G++RTPL P TF DDPLRVLRAVRFAARF F L L AAA+ ++ AL KV RER+G E+ GM +GK+A+P LA+ LL EL L V+ PP
Sbjct: 43 VAVDNISGVEFASLVNEYLGEQGEETHKIGVIQANPDQSKHLETARVKIFGGWVDCVNLRTETYNEDSRIPEMRFGTAEEDAYRRDFTFNSLFYNINEEKIEDLTGKGAADLAAGVVRTPLPPEATFLDDPLRVLRAVRFAARFAFALDPALAAAARLPAVRQALADKVGRERIGTEVEGMFSGKLARPALAVGLLHELDLLQLVFTPP 251
BLAST of mRNA_P-lacustris_contig1024.313.1 vs. uniprot
Match: A0A061S377_9CHLO (tRNA nucleotidyltransferase (CCA-adding enzyme) n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S377_9CHLO) HSP 1 Score: 248 bits (633), Expect = 6.770e-69 Identity = 137/240 (57.08%), Postives = 168/240 (70.00%), Query Frame = 2 Query: 263 ISLDNCMGDDFAATVNTYLKSQGQDEGKVAVIEANPEQSKHLKTARMKLIGVWVDFVNLRTEVYSSESRIPEASLGTAEEDALRRDFTLNALFYNVNERKVEDKTGRGVDDLRDGIIRTPLSPMITFRDDPLRVLRAVRFAARFGFTLHEDLRAAAQNSEIQAALRTKVSRERVGAELCGMITGKMAQPGLALTLLQELGLAPAVYAPPEHLVPPAGGVDWAYGAAVARAAARLLAFRSS 982
I+LDN +G +FA VN YL S+G++ V VI+ NP+QSKHL+TARMK+ VW+D VNLR+E Y+ SRIPE + GT E+DA RRDFT+NALFYN+N+ VED T RG+DDLRDGIIRTPL PM TF DDPLRVLRAVRFA+RFGF L +L AA + +++ L KVSRERVG EL GM+ G P A +LQ+L L PAV+ PE G YGAA A AR+ A +S
Sbjct: 101 IALDNLLGKEFAEKVNEYLSSEGKEIHTVGVIQCNPDQSKHLETARMKVCDVWLDLVNLRSETYADGSRIPEMTFGTPEQDAYRRDFTINALFYNINDGTVEDLTLRGLDDLRDGIIRTPLDPMETFTDDPLRVLRAVRFASRFGFELESELVKAASSQQVREELVAKVSRERVGTELDGMLNGP--NPLAAAQILQQLRLFPAVFLAPEAQQAKLGPD---YGAACVAAMARMEAVLAS 335
BLAST of mRNA_P-lacustris_contig1024.313.1 vs. uniprot
Match: A0A8K1CFA9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFA9_PYTOL) HSP 1 Score: 247 bits (630), Expect = 1.490e-68 Identity = 129/211 (61.14%), Postives = 153/211 (72.51%), Query Frame = 2 Query: 263 ISLDNCMGDDFAATVNTYLKSQGQDEGKVAVIEANPEQSKHLKTARMKL--IGVWVDFVNLRTEVYSSESRIPEASLGTAEEDALRRDFTLNALFYNVNERKVEDKTGRGVDDLRDGIIRTPLSPMITFRDDPLRVLRAVRFAARFGFTLHEDLRAAAQNSEIQAALRTKVSRERVGAELCGMITGKMAQPGLALTLLQELGLAPAVYAPP 889
I LD G +FA +NTY G + V VI+ANP+QSKHL+TA M L IG WVDFVNLR E YS E RIPE GT +DA RRDFT+N+LFYN++ERK+ED TGRGVDDLR G+IRTPL P +TF DDPLRVLRAVRFA+RF F L ++LRAAA + E++ L KVSRERVG EL GM+TG A P AL L+ ELGL ++ PP
Sbjct: 104 IVLDTMTGKEFADLINTYEVDHGHKKHHVGVIKANPDQSKHLETATMNLGEIG-WVDFVNLRAETYSEEHRIPEVEFGTPLQDAERRDFTVNSLFYNISERKIEDFTGRGVDDLRIGLIRTPLDPRVTFLDDPLRVLRAVRFASRFNFALDDELRAAASSDEVKDVLIKKVSRERVGKELLGMLTGSSAHPERALKLIHELGLCQCIFLPP 313
BLAST of mRNA_P-lacustris_contig1024.313.1 vs. uniprot
Match: A0A7S3FQV5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FQV5_9CHLO) HSP 1 Score: 239 bits (610), Expect = 1.680e-66 Identity = 126/229 (55.02%), Postives = 166/229 (72.49%), Query Frame = 2 Query: 263 ISLDNCMGDDFAATVNTYLKSQGQDEGKVAVIEANPEQSKHLKTARMKLIGVWVDFVNLRTEVYSSESRIPEASLGTAEEDALRRDFTLNALFYNVNERKVEDKTGRGVDDLRDGIIRTPLSPMITFRDDPLRVLRAVRFAARFGFTLHEDLRAAAQNSEIQAALRTKVSRERVGAELCGMITGKMAQPGLALTLLQELGLAPAVYAPPEHL--VPPAGGVDWAYGAAV 943
I+LDN G+ +A +N YL S+G+++ VAVI++NPEQSKHL+TA++K G+ +DFVNLR+E Y+S SRIPE GTAEEDA+RRDFT+NALFYN+ + VED TGRG++DLR+ +IRTPL + TF DDPLRVLRAVRFA+RF F +H D+ AA ++E++ AL+TKVSRER+ E M+ G P LAL L++ GL AV P+ L V P G + GA V
Sbjct: 50 IALDNMSGETYANHLNDYLASRGEEQTSVAVIQSNPEQSKHLETAKVKYQGLEIDFVNLRSESYASSSRIPEIEFGTAEEDAMRRDFTINALFYNIGQGNVEDLTGRGLEDLRNKLIRTPLPALQTFMDDPLRVLRAVRFASRFSFEIHHDIAEAASSAEVRDALQTKVSRERISTEFESMLEGP--NPKLALQLIKSFGLLDAVLNVPQSLKEVLPVGYAERCIGAGV 276
BLAST of mRNA_P-lacustris_contig1024.313.1 vs. uniprot
Match: A0A8J4D594_9CHLO (Uncharacterized protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4D594_9CHLO) HSP 1 Score: 244 bits (623), Expect = 2.000e-66 Identity = 128/214 (59.81%), Postives = 159/214 (74.30%), Query Frame = 2 Query: 263 ISLDNCMGDDFAATVNTYLKSQGQDEGKVAVIEANPEQSKHLKTARMKLIGVWVDFVNLRTEVYSSESRIPEASLGTAEEDALRRDFTLNALFYNVNERKV-EDKTGRGVDDLRDGIIRTPLSPMITFRDDPLRVLRAVRFAARFGFTLHEDLRAAAQNSEIQAALRTKVSRERVGAELCGMITGKMAQPGLALTLLQELGLAPAVYAPPEHLV 901
I+LD+ +G DFA VN YLKSQG++ AVI++NP+QSKHL+TARMK+ +W+D VNLR+E Y+++SRIP + GT E+DALRRDFT+NALFYN+ V ED TGRG+ DLRDG+IRTPL P TF DDPLRVLRAVRF RFGF LH D+ AA + +++ AL TKVS+ERVG EL GM G P A+ LLQ LGL AV+A P L+
Sbjct: 183 IALDDMLGKDFAEMVNDYLKSQGKEARHAAVIQSNPDQSKHLETARMKIGEMWIDLVNLRSETYAADSRIPTMTFGTPEQDALRRDFTMNALFYNITAGGVVEDLTGRGLQDLRDGLIRTPLPPRETFLDDPLRVLRAVRFGTRFGFRLHPDILEAAASEQVRVALATKVSKERVGTELEGMFNGPT--PVEAVRLLQRLGLFTAVFALPASLL 394
BLAST of mRNA_P-lacustris_contig1024.313.1 vs. uniprot
Match: A0A8J4APV2_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4APV2_9CHLO) HSP 1 Score: 243 bits (620), Expect = 3.830e-66 Identity = 127/213 (59.62%), Postives = 158/213 (74.18%), Query Frame = 2 Query: 263 ISLDNCMGDDFAATVNTYLKSQGQDEGKVAVIEANPEQSKHLKTARMKLIGVWVDFVNLRTEVYSSESRIPEASLGTAEEDALRRDFTLNALFYNVNERKV-EDKTGRGVDDLRDGIIRTPLSPMITFRDDPLRVLRAVRFAARFGFTLHEDLRAAAQNSEIQAALRTKVSRERVGAELCGMITGKMAQPGLALTLLQELGLAPAVYAPPEHL 898
I+LD+ +G DFA VN YLKSQG++ AVI++NP+QSKHL+TARMK+ +W+D VNLR+E Y+++SRIP + GT E+DALRRDFT+NALFYN+ V ED TGRG+ DLRDG+IRTPL P TF DDPLRVLRAVRF RFGF LH D+ AA + +++ AL TK+S+ERVG EL GM G P A+ LLQ LGL AV+A P L
Sbjct: 180 IALDDMLGKDFAEMVNQYLKSQGKEARHAAVIQSNPDQSKHLETARMKIGEMWIDLVNLRSETYAADSRIPTMTFGTPEQDALRRDFTMNALFYNITAGGVVEDLTGRGLQDLRDGLIRTPLPPRETFLDDPLRVLRAVRFGTRFGFRLHPDILEAAASEQVRVALATKISKERVGTELEGMFNGPA--PVEAVRLLQRLGLFTAVFALPTPL 390
BLAST of mRNA_P-lacustris_contig1024.313.1 vs. uniprot
Match: A0A453K870_AEGTS (Uncharacterized protein n=2 Tax=Triticeae TaxID=147389 RepID=A0A453K870_AEGTS) HSP 1 Score: 234 bits (597), Expect = 4.650e-66 Identity = 117/216 (54.17%), Postives = 159/216 (73.61%), Query Frame = 2 Query: 263 ISLDNCMGDDFAATVNTYLKSQGQDEGKVAVIEANPEQSKHLKTARMKLIGVWVDFVNLRTEVYSSESRIPEASLGTAEEDALRRDFTLNALFYNVNERKVEDKTGRGVDDLRDGIIRTPLSPMITFRDDPLRVLRAVRFAARFGFTLHEDLRAAAQNSEIQAALRTKVSRERVGAELCGMITGKMAQPGLALTLLQELGLAPAVYAPPEHLVPPA 910
I+LDN G +F VN Y K G+++ + VI+ NP+QSKHL+TARM + G+W+DFVNLR+E Y+ SRIP +GTA+EDALRRD T+N+LF+N+N + VED TGRG++DL+ G+I TPL TF DDPLRVLRA+RFAARF FTL EDL+ AA + ++++ L +K+SRER+G E+ M++ K P AL +++LGL V+A PE L PPA
Sbjct: 120 IALDNMTGQNFCERVNEYSKFMGEEQKGIGVIQCNPDQSKHLETARMLIYGIWIDFVNLRSEKYAENSRIPTVEIGTAKEDALRRDLTINSLFFNINTKSVEDLTGRGLEDLKKGLIDTPLPAKSTFLDDPLRVLRAIRFAARFSFTLAEDLKEAASDEKVKSELGSKISRERIGHEVDLMMSDK--HPVNALRYIRDLGLFYVVFAFPEKLEPPA 333
BLAST of mRNA_P-lacustris_contig1024.313.1 vs. uniprot
Match: A0A453K7T7_AEGTS (Uncharacterized protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453K7T7_AEGTS) HSP 1 Score: 234 bits (597), Expect = 1.330e-65 Identity = 117/216 (54.17%), Postives = 159/216 (73.61%), Query Frame = 2 Query: 263 ISLDNCMGDDFAATVNTYLKSQGQDEGKVAVIEANPEQSKHLKTARMKLIGVWVDFVNLRTEVYSSESRIPEASLGTAEEDALRRDFTLNALFYNVNERKVEDKTGRGVDDLRDGIIRTPLSPMITFRDDPLRVLRAVRFAARFGFTLHEDLRAAAQNSEIQAALRTKVSRERVGAELCGMITGKMAQPGLALTLLQELGLAPAVYAPPEHLVPPA 910
I+LDN G +F VN Y K G+++ + VI+ NP+QSKHL+TARM + G+W+DFVNLR+E Y+ SRIP +GTA+EDALRRD T+N+LF+N+N + VED TGRG++DL+ G+I TPL TF DDPLRVLRA+RFAARF FTL EDL+ AA + ++++ L +K+SRER+G E+ M++ K P AL +++LGL V+A PE L PPA
Sbjct: 91 IALDNMTGQNFCERVNEYSKFMGEEQKGIGVIQCNPDQSKHLETARMLIYGIWIDFVNLRSEKYAENSRIPTVEIGTAKEDALRRDLTINSLFFNINTKSVEDLTGRGLEDLKKGLIDTPLPAKSTFLDDPLRVLRAIRFAARFSFTLAEDLKEAASDEKVKSELGSKISRERIGHEVDLMMSDK--HPVNALRYIRDLGLFYVVFAFPEKLEPPA 304
BLAST of mRNA_P-lacustris_contig1024.313.1 vs. uniprot
Match: A0A250XLF4_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XLF4_9CHLO) HSP 1 Score: 239 bits (611), Expect = 1.470e-65 Identity = 119/213 (55.87%), Postives = 159/213 (74.65%), Query Frame = 2 Query: 263 ISLDNCMGDDFAATVNTYLKSQGQDEGKVAVIEANPEQSKHLKTARMKLIGVWVDFVNLRTEVYSSESRIPEASLGTAEEDALRRDFTLNALFYNVNERKVEDKTGRGVDDLRDGIIRTPLSPMITFRDDPLRVLRAVRFAARFGFTLHEDLRAAAQNSEIQAALRTKVSRERVGAELCGMITGKMAQPGLALTLLQELGLAPAVYA-PPEHL 898
+++DN +G DFA VN +LKSQG++ AVI++NP+QSKHL+TARMK+ +W+D VNLR+E Y+S+SRIP GT +DALRRDFT+N++FYN+N +VED TGRG DL+DGI+RTPL+P+ TF DDPLRV+RAVRFA RFGF L L AA + +++ AL K+S+ER+G EL GM G P A+ LL +LGL +V+A PPE +
Sbjct: 63 VAVDNMLGKDFAELVNQFLKSQGKESRNAAVIQSNPDQSKHLETARMKINDLWIDLVNLRSETYASDSRIPTMQFGTPVQDALRRDFTINSMFYNINTNEVEDLTGRGRSDLKDGILRTPLAPLETFLDDPLRVMRAVRFATRFGFELEMSLEEAASSEKVKEALGQKISKERIGTELEGMFNGPA--PVAAVRLLDQLGLFLSVFALPPEQV 273 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1024.313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1024.313.1 >prot_P-lacustris_contig1024.313.1 ID=prot_P-lacustris_contig1024.313.1|Name=mRNA_P-lacustris_contig1024.313.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=609bp MKTSISLDNCMGDDFAATVNTYLKSQGQDEGKVAVIEANPEQSKHLKTARback to top mRNA from alignment at P-lacustris_contig1024:29646..39956+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1024.313.1 ID=mRNA_P-lacustris_contig1024.313.1|Name=mRNA_P-lacustris_contig1024.313.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=10311bp|location=Sequence derived from alignment at P-lacustris_contig1024:29646..39956+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1024:29646..39956+ >mRNA_P-lacustris_contig1024.313.1 ID=mRNA_P-lacustris_contig1024.313.1|Name=mRNA_P-lacustris_contig1024.313.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=3654bp|location=Sequence derived from alignment at P-lacustris_contig1024:29646..39956+ (Pleurocladia lacustris SAG_25_93)back to top |