Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 593 |
| Cds size | 423 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815294.529073-UTR-P-lacustris_contig1023:67210..67350 | 1622815294.529073-UTR-P-lacustris_contig1023:67210..67350 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1023 67211..67350 + |
| 1693493457.3605907-UTR-P-lacustris_contig1023:67210..67350 | 1693493457.3605907-UTR-P-lacustris_contig1023:67210..67350 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1023 67211..67350 + |
| 1622815294.54607-UTR-P-lacustris_contig1023:67773..67803 | 1622815294.54607-UTR-P-lacustris_contig1023:67773..67803 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1023 67774..67803 + |
| 1693493457.378412-UTR-P-lacustris_contig1023:67773..67803 | 1693493457.378412-UTR-P-lacustris_contig1023:67773..67803 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1023 67774..67803 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815294.5376704-CDS-P-lacustris_contig1023:67350..67773 | 1622815294.5376704-CDS-P-lacustris_contig1023:67350..67773 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1023 67351..67773 + |
| 1693493457.370874-CDS-P-lacustris_contig1023:67350..67773 | 1693493457.370874-CDS-P-lacustris_contig1023:67350..67773 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1023 67351..67773 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1023.309.1 >prot_P-lacustris_contig1023.309.1 ID=prot_P-lacustris_contig1023.309.1|Name=mRNA_P-lacustris_contig1023.309.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=141bp
MAGEWPVPGAAAPGGAGHWCWPRLVFPCRAGGGNGHDVGWLCISAATSAS
GSGRGGSGCVFAFAAEGRWRRSVVVFFVAESAVATAAEWSVGWEWSRRRG
RVLKKRRRRRWQHSFLLQSFRLIPTTTPSSPQKQVTTAQK* back to topmRNA from alignment at P-lacustris_contig1023:67211..67803+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-lacustris_contig1023.309.1 ID=mRNA_P-lacustris_contig1023.309.1|Name=mRNA_P-lacustris_contig1023.309.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=593bp|location=Sequence derived from alignment at P-lacustris_contig1023:67211..67803+ (Pleurocladia lacustris SAG_25_93)
CGATAAGGACGGCGCCGACGGCGGCGCCTGGCGGTAGTTTCCCCCGTTGC
GACGGCTGGGGGTGGCTGGCACAAGCGGCTGCACCAGGAGCGGCGACTGT
GACGGCGGCGGCGTACGGCGGTAGTGTTCCACCTGTTGCGATGGCCGGGG
AATGGCCGGTGCCTGGTGCGGCTGCGCCAGGAGGAGCAGGACATTGGTGT
TGGCCGCGGTTGGTTTTTCCCTGCCGCGCAGGCGGCGGCAACGGCCATGA
TGTCGGGTGGTTGTGTATTTCGGCTGCCACATCCGCGAGTGGCAGTGGCC
GCGGTGGCAGTGGTTGTGTTTTCGCTTTCGCGGCGGAGGGGCGGTGGCGA
CGTTCGGTGGTTGTCTTTTTCGTTGCTGAATCGGCGGTGGCGACAGCGGC
GGAATGGAGTGTTGGATGGGAGTGGTCACGGCGGAGAGGGCGTGTCCTGA
AGAAGCGAAGACGCAGAAGGTGGCAGCACTCTTTCCTTTTGCAATCGTTT
CGTTTAATCCCCACAACAACCCCTTCCAGCCCCCAAAAGCAGGTTACAAC
AGCACAAAAGTAGCGATAAGTGCTGGGTGTTGACGGATTGGGG back to topCoding sequence (CDS) from alignment at P-lacustris_contig1023:67211..67803+ >mRNA_P-lacustris_contig1023.309.1 ID=mRNA_P-lacustris_contig1023.309.1|Name=mRNA_P-lacustris_contig1023.309.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=846bp|location=Sequence derived from alignment at P-lacustris_contig1023:67211..67803+ (Pleurocladia lacustris SAG_25_93)
ATGGCCGGGGAATGGCCGGTGCCTGGTGCGGCTGCGCCAGGAGGAGCAGG
ACATTGGTGTTGGCCGCGGTTGGTTTTTCCCTGCCGCGCAGGCGGCGGCA
ACGGCCATGATGTCGGGTGGTTGTGTATTTCGGCTGCCACATCCGCGAGT
GGCAGTGGCCGCGGTGGCAGTGGTTGTGTTTTCGCTTTCGCGGCGGAGGG
GCGGTGGCGACGTTCGGTGGTTGTCTTTTTCGTTGCTGAATCGGCGGTGG
CGACAGCGGCGGAATGGAGTGTTGGATGGGAGTGGTCACGGCGGAGAGGG
CGTGTCCTGAAGAAGCGAAGACGCAGAAGGTGGCAGCACTCTTTCCTTTT
GCAATCGTTTCGTTTAATCCCCACAACAACCCCTTCCAGCCCCCAAAAGC
AGGTTACAACAGCACAAAAGTAGATGGCCGGGGAATGGCCGGTGCCTGGT
GCGGCTGCGCCAGGAGGAGCAGGACATTGGTGTTGGCCGCGGTTGGTTTT
TCCCTGCCGCGCAGGCGGCGGCAACGGCCATGATGTCGGGTGGTTGTGTA
TTTCGGCTGCCACATCCGCGAGTGGCAGTGGCCGCGGTGGCAGTGGTTGT
GTTTTCGCTTTCGCGGCGGAGGGGCGGTGGCGACGTTCGGTGGTTGTCTT
TTTCGTTGCTGAATCGGCGGTGGCGACAGCGGCGGAATGGAGTGTTGGAT
GGGAGTGGTCACGGCGGAGAGGGCGTGTCCTGAAGAAGCGAAGACGCAGA
AGGTGGCAGCACTCTTTCCTTTTGCAATCGTTTCGTTTAATCCCCACAAC
AACCCCTTCCAGCCCCCAAAAGCAGGTTACAACAGCACAAAAGTAG back to top
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