mRNA_P-lacustris_contig1020.292.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1020.292.1
Unique NamemRNA_P-lacustris_contig1020.292.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1020.292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1020contigP-lacustris_contig1020:67546..67805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size244
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815292.0725033-CDS-P-lacustris_contig1020:67545..676961622815292.0725033-CDS-P-lacustris_contig1020:67545..67696Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1020 67546..67696 +
1693493455.3807962-CDS-P-lacustris_contig1020:67545..676961693493455.3807962-CDS-P-lacustris_contig1020:67545..67696Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1020 67546..67696 +
1622815292.0860822-CDS-P-lacustris_contig1020:67712..678041622815292.0860822-CDS-P-lacustris_contig1020:67712..67804Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1020 67713..67804 +
1693493455.3927872-CDS-P-lacustris_contig1020:67712..678041693493455.3927872-CDS-P-lacustris_contig1020:67712..67804Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1020 67713..67804 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1020.292.1prot_P-lacustris_contig1020.292.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1020 67546..67804 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1020.292.1

>prot_P-lacustris_contig1020.292.1 ID=prot_P-lacustris_contig1020.292.1|Name=mRNA_P-lacustris_contig1020.292.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=81bp
VFSSTTAAVDLLSSCLSLSPALDVFSQQQRLTNTLCGQSRDHMPSDQQAW
KEARVSAGGRELFRQSVVSLSTGGKAQRKRG
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mRNA from alignment at P-lacustris_contig1020:67546..67805+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1020.292.1 ID=mRNA_P-lacustris_contig1020.292.1|Name=mRNA_P-lacustris_contig1020.292.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=260bp|location=Sequence derived from alignment at P-lacustris_contig1020:67546..67805+ (Pleurocladia lacustris SAG_25_93)
GTTTTTAGCTCAACAACAGCAGCAGTTGACCTGCTGTCGTCGTGTCTCTC
TCTGTCTCCAGCCTTGGATGTTTTTTCACAACAACAACGGCTCACAAACA
CGTTGTGTGGGCAAAGCAGAGACCACATGCCAAGTGACCAGCAAGCTTGG
AGCTCAATAATAGGGAGAGGAAGCTAGGGTCTCGGCGGGAGGGCGCGAAT
TGTTCCGTCAGTCAGTCGTGTCCTTGTCAACAGGAGGAAAAGCGCAGAGA
AAGAGAGGAG
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Coding sequence (CDS) from alignment at P-lacustris_contig1020:67546..67805+

>mRNA_P-lacustris_contig1020.292.1 ID=mRNA_P-lacustris_contig1020.292.1|Name=mRNA_P-lacustris_contig1020.292.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=486bp|location=Sequence derived from alignment at P-lacustris_contig1020:67546..67805+ (Pleurocladia lacustris SAG_25_93)
GTTTTTAGCTCAACAACAGCAGCAGTTGACCTGCTGTCGTCGTGTCTCTC
TCTGTCTCCAGCCTTGGATGTTTTTTCACAACAACAACGGCTCACAAACA
CGTTGTGTGGGCAAAGCAGAGACCACATGCCAAGTGACCAGCAAGCTTGG
AGTTTTTAGCTCAACAACAGCAGCAGTTGACCTGCTGTCGTCGTGTCTCT
CTCTGTCTCCAGCCTTGGATGTTTTTTCACAACAACAACGGCTCACAAAC
ACGTTGTGTGGGCAAAGCAGAGACCACATGCCAAGTGACCAGCAAGCTTG
GAAGGAAGCTAGGGTCTCGGCGGGAGGGCGCGAATTGTTCCGTCAGTCAG
TCGTGTCCTTGTCAACAGGAGGAAAAGCGCAGAGAAAGAGAGGAAGGAAG
CTAGGGTCTCGGCGGGAGGGCGCGAATTGTTCCGTCAGTCAGTCGTGTCC
TTGTCAACAGGAGGAAAAGCGCAGAGAAAGAGAGGA
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