mRNA_P-lacustris_contig1020.286.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1020.286.1
Unique NamemRNA_P-lacustris_contig1020.286.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1020.286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1020contigP-lacustris_contig1020:3475..3792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size318
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815292.1167727-CDS-P-lacustris_contig1020:3474..37921622815292.1167727-CDS-P-lacustris_contig1020:3474..3792Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1020 3475..3792 +
1693493455.4074593-CDS-P-lacustris_contig1020:3474..37921693493455.4074593-CDS-P-lacustris_contig1020:3474..3792Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1020 3475..3792 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1020.286.1prot_P-lacustris_contig1020.286.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1020 3475..3792 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1020.286.1

>prot_P-lacustris_contig1020.286.1 ID=prot_P-lacustris_contig1020.286.1|Name=mRNA_P-lacustris_contig1020.286.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=106bp
CSTPFSFALSKYSLALLAKALSMAFLAWLALRSGDMLFCSTSTNFGEETT
SWMQVMTSWNCILDMFNASCLAAPSFARVCLGASDLPEDARGAAAGAARV
EFPAA*
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mRNA from alignment at P-lacustris_contig1020:3475..3792+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1020.286.1 ID=mRNA_P-lacustris_contig1020.286.1|Name=mRNA_P-lacustris_contig1020.286.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=318bp|location=Sequence derived from alignment at P-lacustris_contig1020:3475..3792+ (Pleurocladia lacustris SAG_25_93)
TGCTCGACACCCTTCAGCTTCGCGCTGTCCAAGTACTCCTTGGCGTTGCT
CGCTAAAGCGCTCTCGATGGCCTTCTTGGCTTGGCTAGCTTTAAGATCGG
GCGATATGCTCTTCTGCAGCACCTCCACGAACTTCGGGGAGGAAACTACG
TCTTGGATGCAGGTCATGACCTCGTGGAACTGCATACTAGACATGTTCAA
CGCTTCTTGTCTCGCGGCGCCCTCTTTCGCGCGTGTCTGCCTCGGAGCCT
CCGACCTTCCGGAGGATGCAAGAGGAGCAGCCGCCGGTGCCGCGCGCGTC
GAATTTCCGGCGGCTTGA
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Coding sequence (CDS) from alignment at P-lacustris_contig1020:3475..3792+

>mRNA_P-lacustris_contig1020.286.1 ID=mRNA_P-lacustris_contig1020.286.1|Name=mRNA_P-lacustris_contig1020.286.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=636bp|location=Sequence derived from alignment at P-lacustris_contig1020:3475..3792+ (Pleurocladia lacustris SAG_25_93)
TGCTCGACACCCTTCAGCTTCGCGCTGTCCAAGTACTCCTTGGCGTTGCT
CGCTAAAGCGCTCTCGATGGCCTTCTTGGCTTGGCTAGCTTTAAGATCGG
GCGATATGCTCTTCTGCAGCACCTCCACGAACTTCGGGGAGGAAACTACG
TCTTGGATGCAGGTCATGACCTCGTGGAACTGCATACTAGACATGTTCAA
CGCTTCTTGTCTCGCGGCGCCCTCTTTCGCGCGTGTCTGCCTCGGAGCCT
CCGACCTTCCGGAGGATGCAAGAGGAGCAGCCGCCGGTGCCGCGCGCGTC
GAATTTCCGGCGGCTTGATGCTCGACACCCTTCAGCTTCGCGCTGTCCAA
GTACTCCTTGGCGTTGCTCGCTAAAGCGCTCTCGATGGCCTTCTTGGCTT
GGCTAGCTTTAAGATCGGGCGATATGCTCTTCTGCAGCACCTCCACGAAC
TTCGGGGAGGAAACTACGTCTTGGATGCAGGTCATGACCTCGTGGAACTG
CATACTAGACATGTTCAACGCTTCTTGTCTCGCGGCGCCCTCTTTCGCGC
GTGTCTGCCTCGGAGCCTCCGACCTTCCGGAGGATGCAAGAGGAGCAGCC
GCCGGTGCCGCGCGCGTCGAATTTCCGGCGGCTTGA
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