mRNA_P-lacustris_contig1020.284.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1020.284.1
Unique NamemRNA_P-lacustris_contig1020.284.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1020.284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1020contigP-lacustris_contig1020:690..1286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815291.7277653-CDS-P-lacustris_contig1020:689..7771622815291.7277653-CDS-P-lacustris_contig1020:689..777Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1020 690..777 -
1693493455.2025418-CDS-P-lacustris_contig1020:689..7771693493455.2025418-CDS-P-lacustris_contig1020:689..777Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1020 690..777 -
1622815291.7369735-CDS-P-lacustris_contig1020:1200..12861622815291.7369735-CDS-P-lacustris_contig1020:1200..1286Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1020 1201..1286 -
1693493455.213018-CDS-P-lacustris_contig1020:1200..12861693493455.213018-CDS-P-lacustris_contig1020:1200..1286Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1020 1201..1286 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1020.284.1prot_P-lacustris_contig1020.284.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1020 690..1286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1020.284.1

>prot_P-lacustris_contig1020.284.1 ID=prot_P-lacustris_contig1020.284.1|Name=mRNA_P-lacustris_contig1020.284.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=58bp
FTPTPPNRPDSDHRHRRNSGGDDEGTFRSDSRRPGHDQVYPTTDMRYHAP
GPPNPFIG
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mRNA from alignment at P-lacustris_contig1020:690..1286-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1020.284.1 ID=mRNA_P-lacustris_contig1020.284.1|Name=mRNA_P-lacustris_contig1020.284.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=597bp|location=Sequence derived from alignment at P-lacustris_contig1020:690..1286- (Pleurocladia lacustris SAG_25_93)
TTCACGCCGACGCCACCGAACCGCCCGGACAGCGACCATCGTCATCGTCG
GAATAGCGGCGGCGACGACGAAGGCACTTTTAGATCGTAAGTATTCCCAT
CGGCGGCGGTGGTGGCTACTGTGTATGTTGTTTTGTTCGTTTATTTTCGC
TCTCGTTGCGGGTAGGATGGCAGGAGATCTACCGAACGTTGAATCGGCAT
CATGGCTGTCTAGTAGCTAAAAAGCGTTCATGCGCAAAGTCAATGTCCTC
ACAGGATGGGTTCCTTCGCATATACTAGCAAAATGTTGAACCAAACAGTT
GGCCTTTCGCCAAGCTATTCGGCGCGTGCTTGGAGATTAAATAAAAATGT
GGCGTCGGAATGCGTCCTATGCGCCAGCACTTCTGGCATGGTTGGTGGGA
TTTGCAGAGCACCCTTTCGGTTTCATCGTTTTTGTTGGTGGAACCATGAG
CTAATTTCGGCAACACGTTCGGCGTCCCTTCTTCCTTCCTGTCTTTGAAA
TTATCCCAGGGACAGCCGTAGACCAGGTCATGATCAGGTATATCCGACCA
CCGACATGCGATACCACGCGCCTGGGCCGCCCAATCCGTTTATTGGG
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Coding sequence (CDS) from alignment at P-lacustris_contig1020:690..1286-

>mRNA_P-lacustris_contig1020.284.1 ID=mRNA_P-lacustris_contig1020.284.1|Name=mRNA_P-lacustris_contig1020.284.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=348bp|location=Sequence derived from alignment at P-lacustris_contig1020:690..1286- (Pleurocladia lacustris SAG_25_93)
TTCACGCCGACGCCACCGAACCGCCCGGACAGCGACCATCGTCATCGTCG
GAATAGCGGCGGCGACGACGAAGGCACTTTTAGATCTTCACGCCGACGCC
ACCGAACCGCCCGGACAGCGACCATCGTCATCGTCGGAATAGCGGCGGCG
ACGACGAAGGCACTTTTAGATCGGACAGCCGTAGACCAGGTCATGATCAG
GTATATCCGACCACCGACATGCGATACCACGCGCCTGGGCCGCCCAATCC
GTTTATTGGGGGACAGCCGTAGACCAGGTCATGATCAGGTATATCCGACC
ACCGACATGCGATACCACGCGCCTGGGCCGCCCAATCCGTTTATTGGG
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