mRNA_P-lacustris_contig102.278.1 (mRNA) Pleurocladia lacustris SAG_25_93
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-lacustris_contig102.278.1 vs. uniprot
Match: A0A6H5K8D8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D8_9PHAE) HSP 1 Score: 196 bits (499), Expect = 7.320e-61 Identity = 92/123 (74.80%), Postives = 108/123 (87.80%), Query Frame = 1 Query: 1 ALEVVASSCRGMMNTLRLDRAGRSGPVQDKHIYDAMCADECTLSDSIRQDAMEVSSCTCLQLSTQPSSPTYHIEGDWCLANSGRQGIEIMSRILCETFGQCGVWDCRISDFMCPRFE--KQTI 363
ALEVV+S+CR MM+TLRLDRAGR+GPVQDK+IYD MCA+ECTLSDSIR++AME+SSCTCL+LSTQPS+P YH EGDWC+ NSGR +LCETFGQCGVW+CRISDFMCPR+E KQT+
Sbjct: 115 ALEVVSSTCRVMMDTLRLDRAGRNGPVQDKYIYDVMCANECTLSDSIREEAMELSSCTCLELSTQPSNPIYHTEGDWCVENSGR--------MLCETFGQCGVWNCRISDFMCPRYEYNKQTV 229
BLAST of mRNA_P-lacustris_contig102.278.1 vs. uniprot
Match: A0A835Z9M4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9M4_9STRA) HSP 1 Score: 135 bits (341), Expect = 1.240e-37 Identity = 62/123 (50.41%), Postives = 78/123 (63.41%), Query Frame = 1 Query: 1 ALEVVASSCRGMMNTLRLDRAGRSGPVQDKHIYDAMCADECTLSDSIRQDAMEVSSCTCLQLSTQPSSPTYHIEGDWCLANSGRQGIEIMSRILCETFGQCGVWDCRISDFMCPRFEKQTIAI 369
A+E A+ C+ + LRLDRAGR GPV++ I+D MC+DEC SD++R+ AM C CL LSTQ +P+Y GDWC NSGR +LC TF QCG W CR+ DFMCPRFE +
Sbjct: 72 AMEKAATKCKLKLEQLRLDRAGRHGPVEEWWIFDVMCSDECVQSDALRRAAMAACGCDCLALSTQAGAPSYRAAGDWCAHNSGR--------LLCATFYQCGTWACRVGDFMCPRFEYNQYRV 186
BLAST of mRNA_P-lacustris_contig102.278.1 vs. uniprot
Match: A0A482SVE4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SVE4_9ARCH) HSP 1 Score: 113 bits (283), Expect = 7.650e-29 Identity = 50/117 (42.74%), Postives = 73/117 (62.39%), Query Frame = 1 Query: 1 ALEVVASSCRGMMNTLRLDRAGRSGPVQDKHIYDAMCADECTLSDSIRQDAMEVSSCTCLQLSTQPSSPTYHIEGDWCLANSGRQGIEIMSRILCETFGQCGVWDCRISDFMCPRFE 351
A+ + C+ M +L L R+GR GP+ + Y MC D C +D++ + AM ++ C+CL+LSTQP ++ EGDWC N+ +R+LC+ G CGVW+CRI DFMCPR+E
Sbjct: 73 AMSLALRGCQRMFESLYLYRSGRMGPINIQDSYKIMCRDYCIENDNLHEIAMNITGCSCLELSTQPGDISFTKEGDWCSQNT--------ARLLCDIVGYCGVWNCRIDDFMCPRYE 181
BLAST of mRNA_P-lacustris_contig102.278.1 vs. uniprot
Match: A0A485LNX5_9STRA (Aste57867_23263 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LNX5_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 9.810e-20 Identity = 46/117 (39.32%), Postives = 64/117 (54.70%), Query Frame = 1 Query: 1 ALEVVASSCRGMMNTLRLDRAGRSGPVQDKHIYDAMCADECTLSDSIRQDAMEVSSCTCLQLSTQPSSPTYHIEGDWCLANSGRQGIEIMSRILCETFGQCGVWDCRISDFMCPRFE 351
A+ V++S+C + L+ AGR GPV + MC+D C SD + Q AM+ S C C QLST I D+C NS +R+LC G CG W+C++ DFMCPR++
Sbjct: 79 AMFVLSSTCEASIQYLKQRLAGRFGPVLQSDMEIVMCSDACVQSDVMHQGAMDRSHCLCSQLSTDS-----FISNDFCRQNS--------ARLLCSILGVCGTWECKMEDFMCPRYD 182
BLAST of mRNA_P-lacustris_contig102.278.1 vs. uniprot
Match: A0A7S4EDD8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EDD8_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 8.860e-19 Identity = 53/148 (35.81%), Postives = 66/148 (44.59%), Query Frame = 1 Query: 4 LEVVASSCRGMMNTLRLDRAGRSGPVQDKHIYDAMCADECTLSDSIRQDAMEVSSCTCLQLSTQP-----------------SSP---------------TYHIEGDWCLANSGRQGIEIMSRILCETFGQCGVWDCRISDFMCPRFE 351
+E A C + L+ DRAGR G V + I+ MC+DEC SD + +AM SSCTC LS P +P Y EG+ C NSGR I+C +CGVW CR+ DFMCPR E
Sbjct: 97 MERAAQMCERALYALKTDRAGRHGDVDNYAIFGPMCSDECRDSDGLHLEAMAKSSCTCRDLSPAPPGHGHGGVLEEIAHWGVGAPWTWDGQGIVGYERLGPYRTEGEVCQRNSGR--------IMCRVLDRCGVWACRLGDFMCPRHE 236 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig102.278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig102.278.1 >prot_P-lacustris_contig102.278.1 ID=prot_P-lacustris_contig102.278.1|Name=mRNA_P-lacustris_contig102.278.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=124bp ALEVVASSCRGMMNTLRLDRAGRSGPVQDKHIYDAMCADECTLSDSIRQDback to top mRNA from alignment at P-lacustris_contig102:184156..185028+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig102.278.1 ID=mRNA_P-lacustris_contig102.278.1|Name=mRNA_P-lacustris_contig102.278.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=873bp|location=Sequence derived from alignment at P-lacustris_contig102:184156..185028+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig102:184156..185028+ >mRNA_P-lacustris_contig102.278.1 ID=mRNA_P-lacustris_contig102.278.1|Name=mRNA_P-lacustris_contig102.278.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=744bp|location=Sequence derived from alignment at P-lacustris_contig102:184156..185028+ (Pleurocladia lacustris SAG_25_93)back to top |