mRNA_P-lacustris_contig1018.258.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1018.258.1
Unique NamemRNA_P-lacustris_contig1018.258.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1018.258.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 421 bits (1083), Expect = 1.380e-138
Identity = 205/267 (76.78%), Postives = 219/267 (82.02%), Query Frame = 2 
Query:  104 MARTAFVALACGMLGAANALEVITPSKDLVVVADRTYTVEWTGTSDDNRFEIDLYYCGSYCAEDSCGDWVTALCPYGDDGCPDNEGDYDIVMPEPMMGKSGSGYKVRVVDIDDEEDGDCSDEFYLMASAEAPSFGDPDGPTLVVTSPASGDMASACEEYTIEYEYDNGVGSAVDRFTIDLYAADGSGDCGTYVTSICDKPDIGCKDSQGDYDVEIPCDTPAGEYKIKVGVFEFPEIYGCSDAFTITGDDD------------LSYRF 868
            M RT FVALACGMLGAANAL+V TPSK L V+ADRTYTVEWTGTS DNRFEIDLYYCGS C ED CGDWVTALCPYG+DGCPDNEGDYDIVMPEPM+G SGSGYKVRV DI DEED DCSDEFYL+AS+EAPS GD DGPTL VTSPASGD+A+ C EYT+E++YDNGVGS+VDRF IDLY ADG GDCGTYV SICDKP IGCKDS GDYDVEIPCDT AGEYKI+V  FE   +Y CS  FTI   DD            LSYRF
Sbjct:    1 MTRTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTIEEGDDSDXXXXXEDAFSLSYRF 267
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BLAST of mRNA_P-lacustris_contig1018.258.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI)

HSP 1 Score: 397 bits (1020), Expect = 2.370e-129
Identity = 194/257 (75.49%), Postives = 213/257 (82.88%), Query Frame = 2 
Query:  104 MARTAFVALACGMLGAANALEVITPSKDLVVVADRTYTVEWTGTSDDNRFEIDLYYCGSYCAEDSCGDWVTALCPYGDDGCPDNEGDYDIVMPEPMMGKSGSGYKVRVVDIDDEEDGDCSDEFYLMASAEAPSFGDPDGPTLVVTSPASGDMASACEEYTIEYEYDNGVGSAVDRFTIDLYAADGSGDCGTYVTSICDKPDIGCKDSQGDYDVEIPCDTPAGEYKIKVGVFEFPEIYGCSDAFTITGDDD--LSYRF 868
            MART FVALAC MLGAANALEV+TPS DL+VVADRTYTVEWTG +D  RFEIDLY+CGS C EDSCGDWVTALCPYG++GCPDNEGDYDIVMPEPM G+S SGYKVRV+D+ DE+  DCSD FYLMAS +AP  G   G  L VTSPA GD A A EEYT+E++YDNGVGS VDRF+IDLY ADG GDCGTYVTSICDKP IGCKDS GDYDVEIP DT AG+YKI+VG FE  E+YGCS  FTI G DD  +SY F
Sbjct:    1 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTG-ADSGRFEIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGGDDESMSYDF 256
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BLAST of mRNA_P-lacustris_contig1018.258.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE)

HSP 1 Score: 375 bits (963), Expect = 7.760e-121
Identity = 179/257 (69.65%), Postives = 206/257 (80.16%), Query Frame = 2 
Query:  104 MARTAFVALACGMLGAANALEVITPSKDLVVVADRTYTVEWTGTSDDNRFEIDLYYCGSYCAEDSCGDWVTALCPYGDDGCPDNEGDYDIVMPEPMMGKSGSGYKVRVVDIDDEEDGDCSDEFYLMASAEAPSFGDPDGPTLVVTSPASGDMASACEEYTIEYEYDNGVGSAVDRFTIDLYAADGSGDCGTYVTSICDKPDIGCKDSQGDYDVEIPCDTPAGEYKIKVGVFEFPEIYGCSDAFTITGDDD--LSYRF 868
            M RT FVALACGMLG A+ALEV+TP+   +VV+ R YTVEW+GT  + RFEIDLYYC S C ED CG+WVTALCPYG+DGCPDNEGDYDIVMPEPM G SGSGYKVRV D+DDE+  DCSDEFYLMA A+APS  D  GP + VTSP++GD A A EEYT+E++YDNG+GS+V RF IDLYAA GSGDCGT++ ++CDKP IGCKDS GDYDVEIP D  AG Y I+VG FE   +YGCSD F I G DD  +SYRF
Sbjct:    2 MVRTGFVALACGMLGVASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGADDSSMSYRF 258
[Close]
BLAST of mRNA_P-lacustris_contig1018.258.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI)

HSP 1 Score: 366 bits (940), Expect = 3.670e-117
Identity = 172/238 (72.27%), Postives = 197/238 (82.77%), Query Frame = 2 
Query:  140 MLGAANALEVITPSKDLVVVADRTYTVEWTGTSDDNRFEIDLYYCGSYCAEDSCGDWVTALCPYGDDGCPDNEGDYDIVMPEPMMGKSGSGYKVRVVDIDDEEDGDCSDEFYLMASAEAPSFGDPDGPTLVVTSPASGDMASACEEYTIEYEYDNGVGSAVDRFTIDLYAADGSGDCGTYVTSICDKPDIGCKDSQGDYDVEIPCDTPAGEYKIKVGVFEFPEIYGCSDAFTITGDDD 853
            MLGAA+ALEV+TP++  +VVA R YTVEWTGT  +NR+EIDLYYCGS C ED CGDWVTALCPYG+DGCPDNEGDYDIVMPEPM G SGSGYKVRV D+DD++ GDCSDEFYLMA AEAPS GD  GP + VTSP+SGD A A EEYT+E++YDNG+GS+V RF IDLY+A GSGDCGT++ ++CDKP IGCKDS GDYDVEIP D  AG Y I+VG FE   +YGCSD F I G DD
Sbjct:    1 MLGAASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADD 238
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BLAST of mRNA_P-lacustris_contig1018.258.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI)

HSP 1 Score: 361 bits (926), Expect = 1.430e-115
Identity = 173/207 (83.57%), Postives = 183/207 (88.41%), Query Frame = 2 
Query:  104 MARTAFVALACGMLGAANALEVITPSKDLVVVADRTYTVEWTGTSDDNRFEIDLYYCGSYCAEDSCGDWVTALCPYGDDGCPDNEGDYDIVMPEPMMGKSGSGYKVRVVDIDDEEDGDCSDEFYLMASAEAPSFGDPDGPTLVVTSPASGDMASACEEYTIEYEYDNGVGSAVDRFTIDLYAADGSGDCGTYVTSICDKPDIGCKDS 724
            MART FVALACGMLGAANAL+V TPSK L V+ADRTYTVEWTGTS DNRFEIDLYYCGS C ED CGDWVTALCPYG+DGCPDNEGDYDIVMPEPM G SGSGYKVRV DI DEED DCSDEFYL+AS+EAPS GD DGPTL VTSPASGD+A+ C EYT+E++YDNGVGS VDRF IDLY ADG GDCGTYV SICDKP IGCKDS
Sbjct:    2 MARTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 208
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BLAST of mRNA_P-lacustris_contig1018.258.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 339 bits (870), Expect = 3.820e-107
Identity = 169/255 (66.27%), Postives = 198/255 (77.65%), Query Frame = 2 
Query:  104 MARTAFVALACGMLGAANALEVITPSKDLVVVADRTYTVEWTGTSDDNRFEIDLYYCGSYCAEDSCGDWVTALCPYGDDGCPDNEGDYDIVMPEPMMGKSGSGYKVRVVDIDDEEDGDCSDEFYLMASAEAPSFGDPDGPTLVVTSPASGDMASACEEYTIEYEYDNGVGSAVDRFTIDLYAADGSGDCGTYVTSICDKPDIGCKDSQGDYDVEIPCDTPAGEYKIKVGVFEFPEIYGCSDAFTITGDDDLSYRF 868
            MARTAF ALA GMLGAANALEV++P+   +VVAD  YTVEWTG +   R++IDLYYCGS C ED CGDWVTALCPYGDDGCPD +GDYD+VMPEPM G S SGYKV V D  DE D  CS +F L+AS EAP   D  G  + VTSP+ GD A A  EYT+E++YDNG+GS+V+RF IDLY++ GSGDCGTYVT+ICDKP IGCKDSQGDYDV IP  T +G Y I+VGVFE  ++YGCSD+F I G + +S RF
Sbjct:    1 MARTAFAALAFGMLGAANALEVVSPAAGDMVVADSAYTVEWTGATS-GRYDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDM-GAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIVGGESMSVRF 252
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BLAST of mRNA_P-lacustris_contig1018.258.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI)

HSP 1 Score: 330 bits (847), Expect = 1.020e-103
Identity = 167/256 (65.23%), Postives = 199/256 (77.73%), Query Frame = 2 
Query:  104 MARTAFVALACGMLGAANALEVITPSKDLVVVADRTYTVEWTGTSDDNRFEIDLYYCGSYCAEDSCGDWVTALCPYGDDGCPDNEGDYDIVMPEPMMGKSGSGYKVRVVDIDDEEDGDCSDEFYLMASAEAPSFGDPDGPTLVVTSPASGDMASACEEYTIEYEYDNGVGSAVDRFTIDLYA-ADGSGDCGTYVTSICDKPDIGCKDSQGDYDVEIPCDTPAGEYKIKVGVFEFPEIYGCSDAFTITGD-DDLSYR 865
            MARTAF ALA GMLGAANALEV++P+  + V+ADRTYTVEWTGTSD +RFEIDLYYCGS+C ED CGDWVTALCPYG DGCPD +GDYDIVMPEPM G S SGYKV V D +DE    CS +F L+AS +AP+ G+  G +L VTSP+ GD A A   YT+E++Y+NG+GS+ DRF IDLY+   G+GDCGTYV ++CDKP IGC DSQGDYDVEIP DTPAG Y ++VGVF    ++ CS+ F I  D  D+S R
Sbjct:    1 MARTAFAALAFGMLGAANALEVVSPAAGISVIADRTYTVEWTGTSD-SRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTS-SGYKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEV-GYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIVNDRTDMSMR 253
[Close]
BLAST of mRNA_P-lacustris_contig1018.258.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE)

HSP 1 Score: 327 bits (839), Expect = 1.530e-102
Identity = 163/257 (63.42%), Postives = 196/257 (76.26%), Query Frame = 2 
Query:  104 MARTAFVALACGMLGAANALEVITPSKDLVVVADRTYTVEWTGTSDDNRFEIDLYYCGSYCAEDSCGDWVTALCPYGDDGCPDNEGDYDIVMPEPMMGKSGSGYKVRVVDIDDEEDGDCSDEFYLMASAEAPSFGDPDGPTLVVTSPASGDMASACEEYTIEYEYDNGVGSAVDRFTIDLYAADGSGDCGTYVTSICDKPDIGCKDSQGDYDVEIPCDTPAGEYKIKVGVFEFPEIYGCSDAFTITGDDDL--SYRF 868
            MARTAF A+A GML AANALEV++P   + V+ADR YTVEWTGT+   RFEIDLYYC S+C +D CGDWVTALCPYG DGCPD+ GDYDI+MPEPM G S SGYKV V + +DE D  CSD+F L+AS +AP  G+  G +L VTSP+ GD A A E YT+E++Y+NG GS+ DRF +DLY   G+GDCGTYVT++CD+P IGC DSQGDYDVEIP DTPAG Y I+VGVF+   +Y CSD F +   DD+  S RF
Sbjct:    1 MARTAFAAVAFGMLSAANALEVVSPDGGISVLADRAYTVEWTGTTT-GRFEIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTS-SGYKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEM-GYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTSDDMTISMRF 254
[Close]
BLAST of mRNA_P-lacustris_contig1018.258.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE)

HSP 1 Score: 289 bits (740), Expect = 4.910e-88
Identity = 153/256 (59.77%), Postives = 177/256 (69.14%), Query Frame = 2 
Query:  104 MARTAFVALACGMLGAANALEVITPSKDLVVVADRTYTVEWTGTSDDNRFEIDLYYCGSYCAEDSCGDWVTALCPYGDDGCPDNEGDYDIVMPEPMMGKSGSGYKVRVVDIDDEEDGDCSDEFYLMASAEAPSFGDPDGPTLVVTSPASGDMASACEEYTIEYEYDNGVGSAVDRFTIDLYAADGSGDCGTYVTSICDKPDIGCKDSQGDYDVEIPCDTPAGEYKIKVGVFEFPEIYGCSDAFTITG-DDDLSYRF 868
            MARTAF ALA GMLGA NALEV +P+   ++VA  + TVEWTGTS   RF+IDLYYCGS C ED CGDWVTALCPYGDDGCPD +GDYD+VMPEPM G S SGYKV V D  DE D  CS EF L+ASA                                 +++DNG GS+V+RF+IDLY + GSGDCGTYVTSICDK  IGCKDSQGDYDV IP DT +G Y I+VGVFE P+++GCSD+F I G +  +S RF
Sbjct:    1 MARTAFAALAFGMLGAVNALEVTSPAAGDMIVAASSTTVEWTGTSS-GRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDMGCSGEFTLVASAXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXFDHDNGFGSSVNRFSIDLYMSGGSGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPDVFGCSDSFEIIGGESSMSVRF 253
[Close]
BLAST of mRNA_P-lacustris_contig1018.258.1 vs. uniprot
Match: A0A6H5JEJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ8_9PHAE)

HSP 1 Score: 269 bits (688), Expect = 2.690e-77
Identity = 128/185 (69.19%), Postives = 145/185 (78.38%), Query Frame = 2 
Query:  290 EDSCGDWVTALCPYGDDGCPDNEGDYDIVMPEPMMGKSGSGYKVRVVDIDDEEDGDCSDEFYLMASAEAPSFGDPDGPTLVVTSPASGDMASACEEYTIEYEYDNGVGSAVDRFTIDLYAADGSGDCGTYVTSICDKPDIGCKDSQGDYDVEIPCDTPAGEYKIKVGVFEFPEIYGCSDAFTITG 844
            ED CG+WVTALCPYG +GCPDNEGDYDIVMPEPM G SGSGYKVRV D+D  +D DCSDEFYLMASAEAP  G PD P L+VTSP++GD A A  EYT+E++YDNGVGS VDRF IDLY+  G+GDCGT+V ++CDK  IGCKDS GDYDVEIP     G Y I+VG FE   +YGCS  F I G
Sbjct:   13 EDECGEWVTALCPYGSEGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDGPQDADCSDEFYLMASAEAPVVGGPDAPYLMVTSPSAGDKAQAGGEYTVEFDYDNGVGSRVDRFKIDLYSIGGTGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPETVVDGMYSIRVGRFEDDALYGCSGEFEIVG 197
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1018.258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JRG9_9PHAE1.380e-13876.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYL2_ECTSI2.370e-12975.49EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
A0A6H5JFT9_9PHAE7.760e-12169.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI46_ECTSI3.670e-11772.27EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FH21_ECTSI1.430e-11583.57Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus... [more]
D7G3E8_ECTSI3.820e-10766.27Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
D7G3F0_ECTSI1.020e-10365.23EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JY62_9PHAE1.530e-10263.42GPI-anchored domain-containing protein n=2 Tax=Ect... [more]
A0A6H5KP11_9PHAE4.910e-8859.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEJ8_9PHAE2.690e-7769.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1018contigP-lacustris_contig1018:31544..37732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionSecreted protein similar to EsV-1-163
Ec32 orthologEc-26_003200.1
Exons5
Model size2622
Cds size768
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815288.4016955-UTR-P-lacustris_contig1018:31543..332941622815288.4016955-UTR-P-lacustris_contig1018:31543..33294Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1018 31544..33294 -
1693493453.1056643-UTR-P-lacustris_contig1018:31543..332941693493453.1056643-UTR-P-lacustris_contig1018:31543..33294Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1018 31544..33294 -
1622815288.466205-UTR-P-lacustris_contig1018:37629..377321622815288.466205-UTR-P-lacustris_contig1018:37629..37732Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1018 37630..37732 -
1693493453.1573515-UTR-P-lacustris_contig1018:37629..377321693493453.1573515-UTR-P-lacustris_contig1018:37629..37732Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1018 37630..37732 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815288.4172373-CDS-P-lacustris_contig1018:33294..334401622815288.4172373-CDS-P-lacustris_contig1018:33294..33440Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1018 33295..33440 -
1693493453.1157668-CDS-P-lacustris_contig1018:33294..334401693493453.1157668-CDS-P-lacustris_contig1018:33294..33440Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1018 33295..33440 -
1622815288.4265833-CDS-P-lacustris_contig1018:33799..339351622815288.4265833-CDS-P-lacustris_contig1018:33799..33935Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1018 33800..33935 -
1693493453.1247478-CDS-P-lacustris_contig1018:33799..339351693493453.1247478-CDS-P-lacustris_contig1018:33799..33935Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1018 33800..33935 -
1622815288.4356663-CDS-P-lacustris_contig1018:34430..347271622815288.4356663-CDS-P-lacustris_contig1018:34430..34727Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1018 34431..34727 -
1693493453.1324291-CDS-P-lacustris_contig1018:34430..347271693493453.1324291-CDS-P-lacustris_contig1018:34430..34727Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1018 34431..34727 -
1622815288.4444256-CDS-P-lacustris_contig1018:36992..370771622815288.4444256-CDS-P-lacustris_contig1018:36992..37077Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1018 36993..37077 -
1693493453.140295-CDS-P-lacustris_contig1018:36992..370771693493453.140295-CDS-P-lacustris_contig1018:36992..37077Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1018 36993..37077 -
1622815288.454389-CDS-P-lacustris_contig1018:37525..376291622815288.454389-CDS-P-lacustris_contig1018:37525..37629Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1018 37526..37629 -
1693493453.1489465-CDS-P-lacustris_contig1018:37525..376291693493453.1489465-CDS-P-lacustris_contig1018:37525..37629Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1018 37526..37629 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1018.258.1prot_P-lacustris_contig1018.258.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1018 33295..37629 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1018.258.1

>prot_P-lacustris_contig1018.258.1 ID=prot_P-lacustris_contig1018.258.1|Name=mRNA_P-lacustris_contig1018.258.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=256bp
MARTAFVALACGMLGAANALEVITPSKDLVVVADRTYTVEWTGTSDDNRF
EIDLYYCGSYCAEDSCGDWVTALCPYGDDGCPDNEGDYDIVMPEPMMGKS
GSGYKVRVVDIDDEEDGDCSDEFYLMASAEAPSFGDPDGPTLVVTSPASG
DMASACEEYTIEYEYDNGVGSAVDRFTIDLYAADGSGDCGTYVTSICDKP
DIGCKDSQGDYDVEIPCDTPAGEYKIKVGVFEFPEIYGCSDAFTITGDDD
LSYRF*
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mRNA from alignment at P-lacustris_contig1018:31544..37732-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1018.258.1 ID=mRNA_P-lacustris_contig1018.258.1|Name=mRNA_P-lacustris_contig1018.258.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=6189bp|location=Sequence derived from alignment at P-lacustris_contig1018:31544..37732- (Pleurocladia lacustris SAG_25_93)
ACCCATCCCAGAGTCTTACAACCAAGCCAGCCGAGCCTCAGCGTCCCACA
CCGCCACCTCAGACGCTACCGACGACTTGATCTATCTGCTCCCTGAGGTC
AAGATGGCTCGCACTGCTTTCGTCGCTCTGGCCTGCGGTATGCTCGGCGC
TGCCAACGCCCTCGAAGTCATCACGCCCTCGAAAGACCTCGTGGTGGTCG
CAGACAGGTGAAAAAGCGATCTCATAAATCAACCAAGCTGGCGCGCCTGG
GTGCAGATGTTGAACGTGTGTGATGGCAGTATGTTATTTCACTAGACGCA
CGACACGAACGATGGATGATGGTGCTTGTGACAGCATTATTAGATAAACC
TTAACCTTATCTCGTTCTCGGGACAGCAGCTGGCGTCATGAATGCGCCCA
TATTCATCCGCTCCTCAGACACGAGGCAAGGGACTAGTATTCTCCGCCGG
GCGCGTGTCAAGCCGCGCGAGCCATTCGACTTACTTTAGAGCAGTAGTTG
TCCGCCTCGAGGTCGAGAAGTGGTGTGGTCCCCGAGCGGGTGTGAACACT
GGAGTAGACGGTAGAAACCACCGATTCCTCTCAACATGTTCTACTATCTC
ACAAAGTATCCGTCCATGCGTCGCCTTCCTCTGCATTGTCGCGCGCGCCT
CGCAGGACCTACACCGTAGAGTGGACAGGCACAAGCGACGACAACCGTTT
CGAGATCGACCTCTACTACTGCGGCTCCTACTGCGCGGAGGTGAGCAGGA
TTGGGAGGAGAGGCGCGCGGCCAACAGCTTTATTTTATGGCGTATTAATT
TCAAGCTTTTTTGTGGCTTTTTTTTCCCGTGTTGTGATTCCGAAAAGGCT
ATCCTCCGTCGTCTGTGTGCTCGCACACACATGTATGGGTCCCGCTCAAT
CCGCGGTGAGATCTTTGCGCAGGTCCATTGTTCATTCTCGCTTGTCAGCA
CGTGATCCAGTAAGAGTTCATATCGCGACACATGGCGAACAGCGAACACC
CACTTGGTTCGTGGTGACGAAATTATTATCTACAATCTGTTCCTAAATAC
ATGTAGTAGTTTTCGAAGTACGTTTTTCCCCCGTTCTAGAGCGGGCAAAA
GTGTGTGTACGGATCTGGGCGCCAACGATCCACATACAAAATTAGACATG
AAGGGTAGGGGTCTGAATCCATCGTAGGTCTTGCTGGTGCTTTGTTTGGG
CTTGGTCTCCTTAGTTGCATCATCCGCTTCTCTTTTTGACAAGCCTCAAA
TTTGATCCCACACATATAAGGGCAGCAGCTTTCCCGGCCGTTAGAATAGC
AAACAAGGCTTTTTGTTTGCCTTCTGCCATCATTCTCACAATCAGGTCAC
GGCCACACCAAAGAAAATATGTACGAGTCAATTGCCACGTTGTTTTGGAC
TTTTATCCACAGATGGCATAATGAAATTGAGTTGTTGTGTGTGTTCAAGT
ATTATGGAAGTAAGAAGGATTCAAATTGGCATGTCGGATCTTTTTTTTTC
ATCACATCTACATCTCTAAATGTATGATTCCCGCAGGGTGTCACCCTCCA
TACCGCCGATAGGTGCAAACAAGACTGGCACCCAGGACAAAAACAGTACT
CCAAACAGCAAGCAGCATTATTGAGTCCGATAGGTGCAAACAAGACTGGC
ACCCAGGACAAAAACAGTACTCCAAACAGCAAGCAGCATTATTGGAGACT
CCAGTAATACTCAATAATGCTGCTTGCTGTTTGGAGTACTGTTTTGTCCT
GGGTGCCAGTCTTGTTTGCACCTATCGGCGGTGTGGAGGGTGACACCCTG
CGGGAATCATACAGAAGGGTTCCTGTGATTGTTGTTGTTGTTCCGGTCGC
TGCTTGGTACCTTACATCATCCGTACTTCCTTGACGCGGGCGATTTCTGT
GTTCACAGCAGTCTTGACTACATAAATTTACCCATGAAAGGTATACAAAT
CAGAATAAAAGAAAACAAGTTGGTTCTACAATGCACAAAACGCGATAAAA
CAAAACAAAACAGCGATACGTGCCTTAATTTTCATCGCAAGTGGGATTAA
AAAAAATATATATATATATATTTTCTCGTCACGAGCCACGAAAAAGAAAA
AAAGGAAAAGGAAAAGGACTGAACTGAACCATTGCAAGTATATAGAGATC
CGGAAAAGCCCTTTTGAGTACAAATTGTATCCACACTTGAAACACCCCAT
AGCAACGGCAACGGCGATAGTTCCGGGCGTCCGCCTACATGCAGTTCAGG
CGCGTTCGTAGACCTTGGGCTTGCATTGGTACGCTGCGAACTTACGCGAG
CTTCGTGAAATGGATTACTCCGGTCTGACACATTTTTTTTTGCCAAGTTG
GCTCAAAGCCGGGCGTCCGACTTGATGAAACAATAATTTCTTTCACCCTG
TACATCTTGTCTGGCAGACAAAAGAGTTGCACAACAGTTTCAAACAGGCG
TGAAACTTTTTACATCATTGGTACAGGTCCATGAAAATTTTCCATGGACT
ACAATTACAATATCAATAGTGTACATTCCCCAATTTGAATGAAATCCGTA
TCTGAAAGCCCAAACAGCAAAGCGGCGTACTGTAAAGGATGTTTTTCGGA
AGTATCAATATTTATGCTTCGCAAAATACGGACACTAATGATGGCGCGAG
GCCTCCAGAAGACAGCTAAACGAGCACCGACAGTTGGAATGTAATCGTGA
TGTTCGCTTTCTATTTTTATTGGAAATAAACTAAGTATAGGCACCCTCTC
TCGGACAAAAGTCGGTCCAATCGTCTCATGCTCATGCTTTTTTTTGTATT
TTCATTTCTTCCCCAAGCCTGTGGCCTTTCTCGGCTGAAGTTCTTTTCTT
GCTGGTTTGTTTCCAAAGCGGCCGAAGGTACGGCGCAAGTGACGGCCAAT
CAGATGTCTTTCTTCGTTTCGTTTCGTTTTTTTTGCCGCTGGCAAGACCC
ACCCTTAACCCGTTGGACTGGCGCCATGTGCGAACGTGCAATCTCCATCG
AACAGGACTCTTGCGGTGACTGGGTCACCGCCCTGTGCCCCTACGGCGAT
GACGGATGCCCTGACAACGAGGGCGACTACGATATCGTCATGCCGGAGCC
CATGATGGGCAAATCTGGCTCCGGCTACAAGGTCCGCGTGGTGGACATCG
ATGACGAGGAAGATGGCGATTGCTCGGACGAGTTCTACCTCATGGCTTCC
GCCGAGGCACCTTCCTTCGGCGACCCTGACGGCCCGACGTTGGTGGTGAC
TTCGCCTGCTTCGGGTGACATGGCTTCGGCGTGCGAGGAATACACTATCG
AGGTGAGAACGCAGCTTCTAAGTGATTCGAGCGGAGACAACTTGACGACT
GTATAATGATTTACTTCACAAGCAGGTAGTTGGATGAGCGATAAGACCAT
CGTTGATGGTTAGGTGTAAAATTCCATTGTACACAACAATGGCTGTGTGT
AAAAGTTCATCGCAGGAGTTCTGTGCAATTACCATGCAGCCCGTGGCAAG
CGAAAGTCGCGGTTATTTCTGAGAAGCTAAAATATTGCAGAGGTTCTTTC
AGCACGACGGTCGTTTGGTAGTGGTAGTGCGCTTGGTGGCATTATCCCGT
CCGAAGCCTGTTTCTGTGTATGGTCAACCTACCCGCTCTAGGATATCTGC
GAGCTTTGCGAGGATGCTCTTCTTGTCTGATACGTGCCTATCAAGAGTCG
TGTTGGCTCTGCTGTGCTGCGTTCTGTGATTGGATGTGCCGACGTGGCAT
CCAAACCATCTCTTGTTCTCGCAAAATCTCTCATTGACTGGCGGCAGTAC
GAGTATGACAACGGCGTGGGATCGGCAGTGGACCGGTTCACGATCGACCT
GTACGCGGCGGATGGATCAGGCGATTGCGGGACGTACGTGACGAGCATTT
GCGACAAGCCCGACATCGGCTGCAAGGACTCCCGTGAGTAGCTCATCGTC
CGCTGTTTCATCACCCTGATGAGCATGCACTTCCAAACTCGTTCACCGTT
GGAACCTACCCCCATGTTGTGATGTGGCTAGTTGGATGGGACAGACGAGG
TAGCAGCCGCGAAAAATCTGTGAGAGGTCAAAACTATTCAAGGTCATGGT
AAATGGTTGGTGCTCACGGGTGCTTACAACAGTCCTTTGGCACATACCCA
GACAAGACATTATGGCGATTGTTGATTCCTTGCATGGGCGAAATAACCCC
CAACCCTGTCGGTGCGAGCTCTTGTTCACCCGTCCTGCTTGACCTCTGAA
ACTGCTTCCTCATCCCGACACACGTGCGTTGTGTTGTACCAGAGGGTGAC
TACGACGTCGAGATCCCGTGCGACACCCCGGCAGGGGAGTACAAGATCAA
GGTTGGTGTGTTCGAGTTCCCTGAAATCTACGGGTGTTCCGACGCCTTCA
CCATCACGGGCGACGACGACTTGTCCTACAGGTTCTAGATTCAGTGAAAT
GAATCCCAAGTATGCAGAGCAGTCAATGTCACTTTTTGAGTGACAAGTCG
CCCTTTCCTAGTCGTCTTTTGATTGATTTTCTCGTACTAATGGGACTCAA
ATCCGAAGAATGAAGCGCGACTCCTGTAAAACCAACGGTTTGCTTTTTTC
CGTGTATTGCAAGAGGTGTTGTCTCTTTCTTGAGATTGATTGACGTGTTG
TGTTGGTGTGCAAGCGTCTGTAGATCTTGTCGGGGATGTTCGGGGCTGGC
TTGTTCAGGGGCTTTTGCGCTTGCATCTTGGAAAACGCTGTGACCTTCGC
TTGAACGAACGCATGTAAGGCTACGGAAGGTTTTGGGTTAGCAATGTATC
TGCCGACTGCGGCTGATCGTCGTGTGCTGCCTGGTGGTGACATCTTCGTT
GTGAAAGGTCCGTAAAAGAGACCAGCAAGGTAGATCGACTTTTGCACTGC
TTGGTTTTCGCTGTTCTCGGACATGGTATTGGCTTGGTGGTGTAGAAGGG
CCAGCCCAGTCTTTAGTTGTTGGAGTTTGTGTCTCGCGAACTTGTGTTGA
CTTGTCGCCAGCACTTGCTGCCCAAGAGTTATGTTTTGCTCTGTTTCTTG
TTGTGATGAACGGGTGCGGGATCATTCGCTGGCGAGTTGTCAGGAGACCT
TTTTGAGCGGGTCCTTCTGGTGCTTGCGGTTGTCTCCTCGTGTTATTACC
CATCCGCAGCCTTGTTTTTTCCCTTGGGGGAGAGCAGTGGTGTTGGCATT
GAATGTCAAACCTATCAGGGCAGTCGATCGATTCTTCGTTCAGTTCAGGT
GGCGGCCGGCCTTGTGCTGCTAGCTAATGATGTTGCTGCTAGTCGTTTTG
GGTCGTTTTCGTTCCTCCATCGCCTTTCCTAGCGGTGCGAGAAGAGCTTG
GATAGCTTCCCAGGGGTGTTTTTGTGACACAGGATAAAGGCATACTCTTG
GTATTTTGTTCTTCGCCGAGCTTCGCAGGTGAAGTGAGTGGTACAGAGAA
AGGTTTTCTAGTGTGCAATATCAGCATATCGGCAGGATCACCCTCTTGTA
TTCTTGTCTTTCTGAACTCCGTCAACTTGGATTTTGTTCTGTTGGCACGT
GATGTTGATGGCTTGGGGCTTCATCCAGGTCTACTTGACTTGATTCGTTT
GTACCTTCCCTTGAGTTCGCGTGCCGCAACTGAAATCTGTCTCTTTGCCT
TGAAGAAAAGAATGCAGAAGAGGAGCGGTACTGGATTAGTCACCGATTTC
AAAGTGAAGGCGATGCGTAAAGCTTTCGTGTAGCTGGATCTTGATTTATG
CTGACAACTGTAGTCGCAGCCTAAAACATCCTCTACTTCTGCTCTCCGCG
AAGACGGATGTCCTGTTGTTTTCGTACGAACATGTGCGTTTTCTTCGGGA
ATCTTGGGACTGCTCGTTGGTTGGCCTTTGTATGCTGGAAGGCACAAATA
GTGGCAGGGCAGCCCCCTTCACCGGTATGAGCATGTGGTATCCTAGCTGT
ACGAGCTATACGTTATGGACCGTTTGATTGCTGCTGTTAATTGAATGTCA
AACAGGTCCATCCATGTTGTACCCCTTGGGATATCACGTGGCTTTATGGC
TTTACAATGATATATTGATACTGTCGTACTACTTGTACGTCACCAATCGT
CTCAAGTGTCTCAAGCTGGTGGTACACGTTTCGCAAGTGTTGAAAAGAAG
GACCACGAACGAACGCGCAGCATGTGGAACAGGTACAGG
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Coding sequence (CDS) from alignment at P-lacustris_contig1018:31544..37732-

>mRNA_P-lacustris_contig1018.258.1 ID=mRNA_P-lacustris_contig1018.258.1|Name=mRNA_P-lacustris_contig1018.258.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1536bp|location=Sequence derived from alignment at P-lacustris_contig1018:31544..37732- (Pleurocladia lacustris SAG_25_93)
ATGGCTCGCACTGCTTTCGTCGCTCTGGCCTGCGGTATGCTCGGCGCTGC
CAACGCCCTCGAAGTCATCACGCCCTCGAAAGACCTCGTGGTGGTCGCAG
ACAGATGGCTCGCACTGCTTTCGTCGCTCTGGCCTGCGGTATGCTCGGCG
CTGCCAACGCCCTCGAAGTCATCACGCCCTCGAAAGACCTCGTGGTGGTC
GCAGACAGGACCTACACCGTAGAGTGGACAGGCACAAGCGACGACAACCG
TTTCGAGATCGACCTCTACTACTGCGGCTCCTACTGCGCGGAGGACCTAC
ACCGTAGAGTGGACAGGCACAAGCGACGACAACCGTTTCGAGATCGACCT
CTACTACTGCGGCTCCTACTGCGCGGAGGACTCTTGCGGTGACTGGGTCA
CCGCCCTGTGCCCCTACGGCGATGACGGATGCCCTGACAACGAGGGCGAC
TACGATATCGTCATGCCGGAGCCCATGATGGGCAAATCTGGCTCCGGCTA
CAAGGTCCGCGTGGTGGACATCGATGACGAGGAAGATGGCGATTGCTCGG
ACGAGTTCTACCTCATGGCTTCCGCCGAGGCACCTTCCTTCGGCGACCCT
GACGGCCCGACGTTGGTGGTGACTTCGCCTGCTTCGGGTGACATGGCTTC
GGCGTGCGAGGAATACACTATCGAGGACTCTTGCGGTGACTGGGTCACCG
CCCTGTGCCCCTACGGCGATGACGGATGCCCTGACAACGAGGGCGACTAC
GATATCGTCATGCCGGAGCCCATGATGGGCAAATCTGGCTCCGGCTACAA
GGTCCGCGTGGTGGACATCGATGACGAGGAAGATGGCGATTGCTCGGACG
AGTTCTACCTCATGGCTTCCGCCGAGGCACCTTCCTTCGGCGACCCTGAC
GGCCCGACGTTGGTGGTGACTTCGCCTGCTTCGGGTGACATGGCTTCGGC
GTGCGAGGAATACACTATCGAGTACGAGTATGACAACGGCGTGGGATCGG
CAGTGGACCGGTTCACGATCGACCTGTACGCGGCGGATGGATCAGGCGAT
TGCGGGACGTACGTGACGAGCATTTGCGACAAGCCCGACATCGGCTGCAA
GGACTCCCTACGAGTATGACAACGGCGTGGGATCGGCAGTGGACCGGTTC
ACGATCGACCTGTACGCGGCGGATGGATCAGGCGATTGCGGGACGTACGT
GACGAGCATTTGCGACAAGCCCGACATCGGCTGCAAGGACTCCCAGGGTG
ACTACGACGTCGAGATCCCGTGCGACACCCCGGCAGGGGAGTACAAGATC
AAGGTTGGTGTGTTCGAGTTCCCTGAAATCTACGGGTGTTCCGACGCCTT
CACCATCACGGGCGACGACGACTTGTCCTACAGGTTCTAGAGGGTGACTA
CGACGTCGAGATCCCGTGCGACACCCCGGCAGGGGAGTACAAGATCAAGG
TTGGTGTGTTCGAGTTCCCTGAAATCTACGGGTGTTCCGACGCCTTCACC
ATCACGGGCGACGACGACTTGTCCTACAGGTTCTAG
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