mRNA_P-lacustris_contig1018.253.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1018.253.1
Unique NamemRNA_P-lacustris_contig1018.253.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1018.253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1018contigP-lacustris_contig1018:5918..6273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size356
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815287.931415-CDS-P-lacustris_contig1018:5917..62711622815287.931415-CDS-P-lacustris_contig1018:5917..6271Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1018 5918..6271 +
1693493452.8297296-CDS-P-lacustris_contig1018:5917..62711693493452.8297296-CDS-P-lacustris_contig1018:5917..6271Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1018 5918..6271 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1018.253.1prot_P-lacustris_contig1018.253.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1018 5918..6271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1018.253.1

>prot_P-lacustris_contig1018.253.1 ID=prot_P-lacustris_contig1018.253.1|Name=mRNA_P-lacustris_contig1018.253.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=118bp
REQNGRQQDRRQRQQRTAERQQGSGQHTRGRQQAAAERAARRQTAQRNQS
RPQARSSLQEHQLRPSTSQEVEHRPGLVIATPKRPDLVPKTARQATGCSG
RGNSGSSEATTRNNGRVT
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mRNA from alignment at P-lacustris_contig1018:5918..6273+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1018.253.1 ID=mRNA_P-lacustris_contig1018.253.1|Name=mRNA_P-lacustris_contig1018.253.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=356bp|location=Sequence derived from alignment at P-lacustris_contig1018:5918..6273+ (Pleurocladia lacustris SAG_25_93)
CGGGAGCAAAACGGACGACAGCAGGATAGGCGACAACGGCAGCAACGGAC
AGCAGAGCGGCAACAAGGCAGCGGACAACACACGCGTGGCAGGCAACAAG
CAGCGGCAGAACGGGCAGCCCGCCGGCAGACAGCTCAGCGAAACCAGTCC
AGGCCACAGGCTCGATCCAGTCTACAAGAGCACCAGCTCCGGCCCTCCAC
ATCTCAAGAAGTCGAACACCGTCCTGGTCTTGTGATTGCAACCCCAAAGC
GCCCAGATCTTGTACCTAAGACCGCGCGGCAAGCAACGGGTTGCAGCGGG
AGAGGCAACAGCGGCAGCAGCGAGGCAACAACGCGGAACAACGGACGCGT
GACAGG
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Coding sequence (CDS) from alignment at P-lacustris_contig1018:5918..6273+

>mRNA_P-lacustris_contig1018.253.1 ID=mRNA_P-lacustris_contig1018.253.1|Name=mRNA_P-lacustris_contig1018.253.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=708bp|location=Sequence derived from alignment at P-lacustris_contig1018:5918..6273+ (Pleurocladia lacustris SAG_25_93)
CGGGAGCAAAACGGACGACAGCAGGATAGGCGACAACGGCAGCAACGGAC
AGCAGAGCGGCAACAAGGCAGCGGACAACACACGCGTGGCAGGCAACAAG
CAGCGGCAGAACGGGCAGCCCGCCGGCAGACAGCTCAGCGAAACCAGTCC
AGGCCACAGGCTCGATCCAGTCTACAAGAGCACCAGCTCCGGCCCTCCAC
ATCTCAAGAAGTCGAACACCGTCCTGGTCTTGTGATTGCAACCCCAAAGC
GCCCAGATCTTGTACCTAAGACCGCGCGGCAAGCAACGGGTTGCAGCGGG
AGAGGCAACAGCGGCAGCAGCGAGGCAACAACGCGGAACAACGGACGCGT
GACACGGGAGCAAAACGGACGACAGCAGGATAGGCGACAACGGCAGCAAC
GGACAGCAGAGCGGCAACAAGGCAGCGGACAACACACGCGTGGCAGGCAA
CAAGCAGCGGCAGAACGGGCAGCCCGCCGGCAGACAGCTCAGCGAAACCA
GTCCAGGCCACAGGCTCGATCCAGTCTACAAGAGCACCAGCTCCGGCCCT
CCACATCTCAAGAAGTCGAACACCGTCCTGGTCTTGTGATTGCAACCCCA
AAGCGCCCAGATCTTGTACCTAAGACCGCGCGGCAAGCAACGGGTTGCAG
CGGGAGAGGCAACAGCGGCAGCAGCGAGGCAACAACGCGGAACAACGGAC
GCGTGACA
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