mRNA_P-lacustris_contig1017.247.1 (mRNA) Pleurocladia lacustris SAG_25_93
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1017.247.1 vs. uniprot
Match: A0A6H5K963_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K963_9PHAE) HSP 1 Score: 224 bits (572), Expect = 3.530e-62 Identity = 113/160 (70.62%), Postives = 130/160 (81.25%), Query Frame = -2 Query: 2 EWNETVETRAALDSALDKRRAARHAFKSNRNTATWRILKVACKEVAAAIPTGIYAHLDRYVTELETAYKDREMRGLYKHLQKSVGLTGRHAGRQQFVKDGKGVLLRSKKGILKRWERFFDTLLNTKCPTLNPDIVDQVTQRAATIATRRLGAVPDLEEVE 481
EWN T +RAAL +ALDKRRAARHAFK+ N ATWRILK ACK V A I T +Y HL+ YV +LE Y+DR+MRGLY+HL++S+GL+GR AG QQFV D GVLLR+K ILKRW RFFDTLLN+K PTLNPD+V+QVTQR AT ATRRL AVPDLEEVE
Sbjct: 28 EWNMTAASRAALATALDKRRAARHAFKARPNAATWRILKAACKGVKATIATSVYDHLEGYVMKLEAIYQDRDMRGLYQHLKRSMGLSGRQAGGQQFVTDENGVLLRNKNAILKRWRRFFDTLLNSKSPTLNPDVVEQVTQRPATRATRRLAAVPDLEEVE 187
BLAST of mRNA_P-lacustris_contig1017.247.1 vs. uniprot
Match: A0A6H5JTF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTF9_9PHAE) HSP 1 Score: 221 bits (562), Expect = 1.070e-61 Identity = 108/197 (54.82%), Postives = 140/197 (71.07%), Query Frame = 3 Query: 4092 AVRSGAPFGAAVHSAKFLEIWCANANPVESANIEGKVKGFNTCFNVKPPDDVAGATTRVT-------GPYLGPDNLHDFNHGQTCREKYGGLSSCRELSGVNLNAHEQNHAKKKKFLATVNTMGFDRFSFMVTLINEIENEVVNRRSLDALVESVTLHPGKRLTMCKALIWATGRCWCEKPLLRSYDHFGRVRLTFL 4661
AVRSGA FG+AV K L+I A+ P +SA+I G V+ + F+++P ++ AT R T GPY GPD LHD NHG CR+KYGG+ +C +LSGVNLNAHEQNHAKKKKFL +N M FDRF+FMVTLINE ENE + RRS+ +V+ V H +++ +C+A +W GRC+CE L+RS+D FGRVRLTF+
Sbjct: 28 AVRSGACFGSAVQRTKALQIQVAHHQPGKSADINGIVEEYGLSFDIQPLEEDPTATVRRTHALGSNAGPYYGPDTLHDCNHGDDCRQKYGGIDTCAQLSGVNLNAHEQNHAKKKKFLHMLNVMKFDRFTFMVTLINETENEAMKRRSVANMVKRVRGHGLEKVQICQAEVWFCGRCFCENSLMRSFDQFGRVRLTFI 224
BLAST of mRNA_P-lacustris_contig1017.247.1 vs. uniprot
Match: D7G349_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G349_ECTSI) HSP 1 Score: 223 bits (567), Expect = 3.170e-59 Identity = 109/197 (55.33%), Postives = 139/197 (70.56%), Query Frame = 3 Query: 4092 AVRSGAPFGAAVHSAKFLEIWCANANPVESANIEGKVKGFNTCFNVKPPDDVAGATTRVT-------GPYLGPDNLHDFNHGQTCREKYGGLSSCRELSGVNLNAHEQNHAKKKKFLATVNTMGFDRFSFMVTLINEIENEVVNRRSLDALVESVTLHPGKRLTMCKALIWATGRCWCEKPLLRSYDHFGRVRLTFL 4661
AVRSGA FG+AV K L+I A P +SA+ G V+ + F+++P + AT R T GPY GPD LHD NHG CR+KYGG+ SC +LSGVNLNAHEQNHAKKKKFL +N M FDRF+FMVTLINE ENE +NR+S+ +V+ V H +R+ +C+A +W GRC+C+K L+RS+D FGRVRLTF+
Sbjct: 277 AVRSGACFGSAVQRTKALQIQVAQHQPGKSADTNGIVEEYGLPFDIQPLQEDPTATVRRTHALGSNAGPYYGPDALHDCNHGDDCRQKYGGIDSCAQLSGVNLNAHEQNHAKKKKFLHMLNVMKFDRFAFMVTLINETENEAINRKSVANMVKRVRGHGSERVEICQAQVWFCGRCFCQKSLMRSFDQFGRVRLTFV 473
BLAST of mRNA_P-lacustris_contig1017.247.1 vs. uniprot
Match: A0A6H5KIY0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY0_9PHAE) HSP 1 Score: 214 bits (546), Expect = 2.500e-58 Identity = 109/160 (68.12%), Postives = 125/160 (78.12%), Query Frame = -2 Query: 2 EWNETVETRAALDSALDKRRAARHAFKSNRNTATWRILKVACKEVAAAIPTGIYAHLDRYVTELETAYKDREMRGLYKHLQKSVGLTGRHAGRQQFVKDGKGVLLRSKKGILKRWERFFDTLLNTKCPTLNPDIVDQVTQRAATIATRRLGAVPDLEEVE 481
EWN T RAAL +ALDKRRAARHAFK+ N ATWRILK ACK V A I T +Y H++ YVTELE Y+DR+M GLY+HL++S G +GR AG QQFV D GVLLR+K ILKRW RFF+TLLN+K PTLNPD+V+QV QR AT ATR L AVPDLEEVE
Sbjct: 145 EWNMTTAARAALATALDKRRAARHAFKARPNAATWRILKAACKGVKATIATSVYDHVEGYVTELEAVYQDRDMWGLYQHLKRSTGPSGRQAGGQQFVTDENGVLLRNKDAILKRWRRFFNTLLNSKSPTLNPDVVEQVMQRPATRATRHLAAVPDLEEVE 304
BLAST of mRNA_P-lacustris_contig1017.247.1 vs. uniprot
Match: A0A6H5K133_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K133_9PHAE) HSP 1 Score: 226 bits (576), Expect = 1.650e-57 Identity = 108/175 (61.71%), Postives = 132/175 (75.43%), Query Frame = 1 Query: 3217 QARTIVPVILEIKGCPNCPKIEGVTGDDWREHGYFVFRQIVVHIHLLGTVRDMVHSGTPITTAWGNLLNHLSKDLDWLEEHSETAKRAVQN-DGLVKSLLEAYLAFEALTDHPYEFSSIVHGFFPPLMSCDGCNKLATSNMTLERFLAQRDKQVIDMDLSACWLTLSMLSPLVFS 3738
Q + IV +++E KGC C + GV GD+W++HGYFVF + VHI L VR +VH GTPITTAW LL HL DL W+ EH + A R DGL +SLLE +LAFEALTDHP EFSSI G+FP + SCDGCNKL+T+NMTLE FLAQR++QV DMDL+ACWL+LS+LSP+VFS
Sbjct: 62 QDKYIVDIVIEKKGCAFCRNVRGVPGDEWQQHGYFVFGETAVHIELPLEVRALVHGGTPITTAWRGLLQHLETDLIWMGEHPKLATRVSTGMDGLTRSLLEVFLAFEALTDHPCEFSSIAAGYFPLITSCDGCNKLSTNNMTLEMFLAQREEQVTDMDLTACWLSLSVLSPMVFS 236
BLAST of mRNA_P-lacustris_contig1017.247.1 vs. uniprot
Match: A0A6H5JQV7_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQV7_9PHAE) HSP 1 Score: 218 bits (555), Expect = 8.830e-57 Identity = 110/160 (68.75%), Postives = 129/160 (80.62%), Query Frame = -2 Query: 5 EEWNETVETRAALDSALDKRRAARHAFKSNRNTATWRILKVACKEVAAAIPTGIYAHLDRYVTELETAYKDREMRGLYKHLQKSVGLTGRHAGRQQFVKDGKGVLLRSKKGILKRWERFFDTLLNTKCPTLNPDIVDQVTQRAATIATRRLGAVPDLEEV 484
+EW ET ETRAAL+ AL KRR AR A + N N+ATWR+LK ACK VA A+ TGIYAHLD YVTELE YKDR+MRG Y+HL++SVGL+GR AG QQFV D GVLLR++ IL+RW RFF TLLNTK PTLNPDI+++VTQR AT T+RLG VP+LEEV
Sbjct: 151 QEWCETPETRAALEQALTKRREARRAMRGNWNSATWRVLKAACKGVATAVETGIYAHLDGYVTELEAIYKDRDMRGQYQHLKRSVGLSGRQAGGQQFVADENGVLLRNRDDILQRWARFFSTLLNTKSPTLNPDIIERVTQRPATRDTQRLGDVPELEEV 310
BLAST of mRNA_P-lacustris_contig1017.247.1 vs. uniprot
Match: A0A6H5JVZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVZ9_9PHAE) HSP 1 Score: 218 bits (554), Expect = 1.330e-56 Identity = 107/195 (54.87%), Postives = 138/195 (70.77%), Query Frame = 3 Query: 4092 AVRSGAPFGAAVHSAKFLEIWCANANPVESANIEGKVKGFNTCFNVKPPDDVAGATTRVT-------GPYLGPDNLHDFNHGQTCREKYGGLSSCRELSGVNLNAHEQNHAKKKKFLATVNTMGFDRFSFMVTLINEIENEVVNRRSLDALVESVTLHPGKRLTMCKALIWATGRCWCEKPLLRSYDHFGRVRLT 4655
AVRSGA FG+AV K L+I A+ P +SA+I G V+ + F+++ ++ AT R T GPY GPD LHD NHG CR+KYGG+ +C +LSGVNLNAHEQNHAKKKKFL +N M FDRF+FMVTLINE ENE +NRRS+ +V+ V H +++ +C+A +W GRC+CE L+RS+D FGRVRLT
Sbjct: 368 AVRSGACFGSAVQRTKALQIQVAHHQPGKSADINGIVEEYGLSFDIQSLEEDPTATVRRTHALGSNAGPYYGPDTLHDCNHGDDCRQKYGGIDTCAQLSGVNLNAHEQNHAKKKKFLHMLNVMKFDRFAFMVTLINETENEAINRRSVANMVKRVRGHGLEKVQICQAEVWFCGRCFCENSLMRSFDQFGRVRLT 562
BLAST of mRNA_P-lacustris_contig1017.247.1 vs. uniprot
Match: A0A6H5L6W5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6W5_9PHAE) HSP 1 Score: 203 bits (516), Expect = 3.600e-56 Identity = 102/150 (68.00%), Postives = 117/150 (78.00%), Query Frame = -2 Query: 32 EWNETVETRAALDSALDKRRAARHAFKSNRNTATWRILKVACKEVAAAIPTGIYAHLDRYVTELETAYKDREMRGLYKHLQKSVGLTGRHAGRQQFVKDGKGVLLRSKKGILKRWERFFDTLLNTKCPTLNPDIVDQVTQRAATIATRRL 481
EWN T R AL +ALDKRRAARH+FK+ N ATWRILK CK V A I T IY HL+RYVTELE Y+DR+MRGLY+HL++S GL+GR AG QQFV D GVLLR+K ILKRW RFF+TLLN+K PTLNPD+V+QV QR AT ATR L
Sbjct: 28 EWNMTTAARTALATALDKRRAARHSFKAGPNAATWRILKATCKGVKATIATSIYDHLERYVTELEAIYQDRDMRGLYQHLKRSTGLSGRQAGGQQFVTDENGVLLRNKDAILKRWRRFFNTLLNSKSPTLNPDVVEQVMQRPATRATRHL 177
BLAST of mRNA_P-lacustris_contig1017.247.1 vs. uniprot
Match: A0A6H5KQZ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ7_9PHAE) HSP 1 Score: 219 bits (558), Expect = 3.700e-56 Identity = 110/160 (68.75%), Postives = 126/160 (78.75%), Query Frame = -2 Query: 2 EWNETVETRAALDSALDKRRAARHAFKSNRNTATWRILKVACKEVAAAIPTGIYAHLDRYVTELETAYKDREMRGLYKHLQKSVGLTGRHAGRQQFVKDGKGVLLRSKKGILKRWERFFDTLLNTKCPTLNPDIVDQVTQRAATIATRRLGAVPDLEEVE 481
EWN T RAAL +ALDKRRAARHAFK+ N ATWR LK ACK V A I T +Y HL+ YVTELE Y+DR+MRGL++HL++S GL+GR AG QQFV D GVLLR+K ILKRW RFFDTLLN+K PTLNPD+V+QVTQR AT A R L AVPDLEE+E
Sbjct: 415 EWNMTAAARAALATALDKRRAARHAFKARPNAATWRTLKAACKGVKATIATSVYDHLEGYVTELEAIYQDRDMRGLHQHLKRSTGLSGRQAGGQQFVTDENGVLLRNKNAILKRWRRFFDTLLNSKSPTLNPDVVEQVTQRPATRAIRHLAAVPDLEEIE 574
BLAST of mRNA_P-lacustris_contig1017.247.1 vs. uniprot
Match: A0A6H5JLY7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLY7_9PHAE) HSP 1 Score: 203 bits (516), Expect = 8.160e-56 Identity = 105/199 (52.76%), Postives = 127/199 (63.82%), Query Frame = 3 Query: 4086 VQAVRSGAPFGAAVHSAKFLEIWCANANPVESANIEGKVKGFNTCFNVKPPDDVAGATTRV-------TGPYLGPDNLHDFNHGQTCREKYGGLSSCRELSGVNLNAHEQNHAKKKKFLATVNTMGFDRFSFMVTLINEIENEVVNRRSLDALVESVTLHPGKRLTMCKALIWATGRCWCEKPLLRSYDHFGRVRLTFL 4661
V AVRSGA FGAA AK L+I NP +SAN G + F FNV PP + GAT R GPY PD LHD NHG CR+ YG + SC++LSGV L HE NHA+KKKFL +N M FDRF+FMV LINE ENE +NR+++ LV+ V H RL +C +W GRC+C+ PL+RS+D GRV LTFL
Sbjct: 7 VLAVRSGACFGAANARAKALQIQLGFMNPQKSAN-NGFAEEFGLSFNVTPPAEEPGATKRRRHPWGSDAGPYYAPDTLHDCNHGIDCRQSYGWIDSCKQLSGVCLTVHEHNHAEKKKFLHMLNAMKFDRFAFMVVLINETENEAINRKTVAGLVQRVLGHSSDRLKVCMVEVWFCGRCFCKNPLMRSFDQVGRVILTFL 204 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1017.247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1017.247.1 >prot_P-lacustris_contig1017.247.1 ID=prot_P-lacustris_contig1017.247.1|Name=mRNA_P-lacustris_contig1017.247.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=403bp MPTEGSATECSCHGCKQTIARRLRGSERAADGAVQLSASSRATGRQAPVTback to top mRNA from alignment at P-lacustris_contig1017:34619..42294- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1017.247.1 ID=mRNA_P-lacustris_contig1017.247.1|Name=mRNA_P-lacustris_contig1017.247.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=7676bp|location=Sequence derived from alignment at P-lacustris_contig1017:34619..42294- (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1017:34619..42294- >mRNA_P-lacustris_contig1017.247.1 ID=mRNA_P-lacustris_contig1017.247.1|Name=mRNA_P-lacustris_contig1017.247.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2418bp|location=Sequence derived from alignment at P-lacustris_contig1017:34619..42294- (Pleurocladia lacustris SAG_25_93)back to top |