mRNA_P-lacustris_contig1016.242.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1016.242.1 vs. uniprot
Match: A0A6H5KNU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE) HSP 1 Score: 203 bits (517), Expect = 1.270e-52 Identity = 142/343 (41.40%), Postives = 196/343 (57.14%), Query Frame = 2
Query: 497 GRQRLSAS---SSLLAARPHPIEAEVNFSDGGTAVTADTLRAQLHQAVREGHTQ--VVEDILRREQPGTAAAVSSVNESGD--DCIHVAAKLGYAEIVSLLVHHGAEKNGLGSRSRTPLHLACIYGHLQAVDVLLGAGADVSIVLRDASGYEHWALSFSARMGHVDVLKSLLRHGADVRQAGARGLTALHYAAVRNQAGTVRALVEAGADIEAAVDDDGGGGTPLHASSVMRCYDAALALLRCGANVDSVNAFGYSPLHGAARQGGKEGSVRMVDLLLRWGADETAIDRDGNRPIDVVGNSSRVEEDSGRQKDEIDSLRELLENAPADRAWRRRGFLVLCRVY 1504
G Q LSAS + LL A P + +E +F ++R L +AV GH V+ IL A S ++ES D D +HV+A G V+ L+ GA+KNGL ++ RTPLHLA GHL V LL A D S+ R + L F+A+ G VL+++L+HG DV + G T+LH AA+ N+ + LVEAGA +E DDD TP + C++AALAL + GAN+++ + G +PL AARQ G++G +VD+LLR GADETA++ DG +VVG+ K +++ +R+LLENAPADRAWRRRG LVLCR +
Sbjct: 18 GGQSLSASCGIADLLFASPAALSSETSFD-------LASMRVALKEAVDSGHVDESAVKPILVM-----AKVASLLSESVDSSDQLHVSASQGQEVRVATLLAEGAKKNGLDAQGRTPLHLAVENGHLSTVKALLAADPDTSVHYR-IWNRSYSVLDFAAQKGDACVLRAILQHGVDVNRR-TDGYTSLHVAALNNRVAAIDVLVEAGAHVEVEDDDDC---TPFLDACSNHCHEAALALFKHGANIEARDMRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAA-CPLNKQDLERVRDLLENAPADRAWRRRGLLVLCRAF 342
BLAST of mRNA_P-lacustris_contig1016.242.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI) HSP 1 Score: 199 bits (506), Expect = 1.710e-51 Identity = 128/307 (41.69%), Postives = 177/307 (57.65%), Query Frame = 2
Query: 605 LRAQLHQAVREGHTQ--VVEDILRREQPGTAAAVSSVNESGDDCIHVAAKLGYAEIVSLLVHHGAEKNGLGSRSRTPLHLACIYGHLQAVDVLLGAGADVSIVLRDASGYEHWALSFS-----ARMGHVDVLKSLLRHGADVRQAGARGLTALHYAAVRNQAGTVRALVEAGADIEAAVDDDGGGGTPLHASSVMRCYDAALALLRCGANVDSVNAFGYSPLHGAARQGGKEGSVRMVDLLLRWGADETAIDRDGNRPIDVVGNSSRVEEDSGRQKDEIDSLRELLENAPADRAWRRRGFLVLCRVY 1504
+R L +AV GH VE IL A++ + D +HVAA G V+ L+ GA+KNGL ++ RTPLHLA GHL V LL A D S+ Y W S+S A+ G VL+++L+HG DV + G T+LH AA+ N+ + LVEAGA +E DDD TP + + C++AALAL + G+N+++ + G +PL AARQ G++G +VD+LLR GADETA++ DG +VVG+ K +++ +R+LLENAP DRAWRRRGFLVLCR +
Sbjct: 1 MRVALEEAVDSGHVDESAVEPIL---VVAKVASLQYASVDSSDQLHVAASQGQEGRVATLLAGGAKKNGLDAQGRTPLHLAVENGHLSTVKALLAADPDTSV------RYRIWNRSYSVLDLAAQKGDACVLRAILQHGVDVNRR-TDGYTSLHVAALNNRVAAIDVLVEAGAHVEVEDDDDC---TPFLDACINHCHEAALALYKHGSNIEARDIRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAA-CPLNKQDVERVRDLLENAPVDRAWRRRGFLVLCRAF 293
BLAST of mRNA_P-lacustris_contig1016.242.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE) HSP 1 Score: 144 bits (362), Expect = 5.660e-32 Identity = 121/337 (35.91%), Postives = 170/337 (50.45%), Query Frame = 2
Query: 557 AEVNFSDGGTAVTADTLRAQLHQAVREGHTQVVEDILRREQPGTAAAVSSVNESGDDCIHVAAKLGYAEIVSLLVHHG-AEKNGLGSRSRTPLHLACIYGHLQAVDVLLGAGADVSIVLRDASGYE--HWALSFSARMGHVDVLKSLLRHGADVRQAGARGLTALHYAAVRNQAGTVRALVEAGADIEAAVDDDGGGGTPLHASSVMRCYDAALALLRCGANVDSVNAFGYSPLHGAARQGGKEGSVRMVDLLLRWGADETAIDRDGNRPIDVV---------------GNSSRVEEDSGRQKD----EIDSLRELLENAPADRAWRRRGFLVLCRV 1501
A+VN D G A + LH AV H +V+ +L A +S SG +H+AA G +VS L+ + + + L SR +PL +A GH V+ LL AGAD++ LR A G A+ + GHV V+++++ +G +VR GLTALH+A A V L++AGAD+ A G TPL + +A +ALL+ G NV+ N G S LH + G RMVDLLLRWGA ETA++++G P D++ G+++R S + D EI R LL APADR WRRR +LV+ R
Sbjct: 129 ADVNRVDPGDACVS------LHVAVEGRHGDLVDLLLIG-----GACPNSRTMSGRTPLHLAAASGNNRVVSTLLGNAMTDVDALDSRGVSPLMVASEGGHCSTVEALLRAGADMN--LRHAGGAHLGMTAMDVAVSKGHVGVIEAIVENGGNVRATDTYGLTALHHA---RGAQAVDVLLDAGADVNAKACPALHGFTPLSVCVMDNSCEAVVALLKRGGNVNDTNCGGLSALHLTCGSLSR-GMDRMVDLLLRWGASETAVNKNGLTPSDILKVTTAEYHARDAGGDGSATRCVGGSATRHDSLTKEIQRARVLLARAPADRTWRRRCWLVMLRA 448
BLAST of mRNA_P-lacustris_contig1016.242.1 vs. uniprot
Match: A0A6H5JHY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY9_9PHAE) HSP 1 Score: 144 bits (362), Expect = 4.280e-31 Identity = 117/341 (34.31%), Postives = 159/341 (46.63%), Query Frame = 2
Query: 617 LHQAVREGHTQVVEDILRREQPGTAAAVSSVNESGD--DCIHVAAKLGYAEIVSLLVHHGAEKN----------------GLGSRSRTPLHLACIYGHLQAVDVLLGAGADVSIVLRDASGYEHWALSFSARMGHVDVLKSLLRHGADVRQAGARGLTALHYAAVRNQAGTVRALVEAGADIEAAVDDDGGGGTPLHASSVMRCYDAALALLRCGANVDSVNAFGYSPLHGAARQGGKEGSVRMVDLLLRWGADETAIDRDGNRPIDVVGNSSRVEEDSGRQKDEIDSLRELLENAPADRAWRRRGFLVLCRV-YLQQRFHGLHQQQRLSAEEVVALKRDS 1582
L A EG+ + +L G A+ S E+ DC A GY ++V + + H + N G TPLHL + G A LL AGADV++ +G + HG DV G+TAL A+ ++A + L EAGA+IEA + G TPLH +S A +ALLR GA+V NA +PLH A + G G+ MVDLLLR GADETA+ +G+ D+V + E+S +++D +R+LL APADRAWRRRGFL+L R Y R H+ + A V R S
Sbjct: 411 LQMAAGEGNVAATQALL---DAGADASSQSEGEASSALDC---AVCQGYTDVVRVKIEHEIDVNISDVDGKTALHHAVAAGKVEMGCTPLHLVAMAGRAAAAQALLDAGADVAL---RQNGVGLSSXXXXXXXXXXXXXXXXXXHGGDVNAKVNNGITALRVASAFDKAPAIDVLTEAGANIEAQAN----GSTPLHVASQEGRLAAGIALLRHGASVGKKNAAAQTPLHLVAAKAGSPGTAEMVDLLLRRGADETAVSENGHTAADMVVLKT---EESDSLAEDVDRVRKLLARAPADRAWRRRGFLILSRAHYPGGRVQFGHRTSQAPAAGVAKRTRSS 735
BLAST of mRNA_P-lacustris_contig1016.242.1 vs. uniprot
Match: D7FKL4_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI) HSP 1 Score: 129 bits (323), Expect = 4.430e-28 Identity = 81/191 (42.41%), Postives = 112/191 (58.64%), Query Frame = 2
Query: 938 ALSFSARMGHVDVLKSLLRHGADVRQAGARGLTALHYAAVRNQAGTVRALVEAGADIEAAVDDDGGGGTPLHASSVMRCYDAALAL---LRCGANVDSVNAFGYSPLHGAARQGGKEGSVRMVDLLLRWGADETAIDRDGNRPIDVVGNSSRVEEDSGRQKDEIDSLRELLENAPADRAWRRRGFLVLCRV 1501
AL A GHVD +++L+ HGADV G+ ALH+A N+ + L+ AGA+ + + G T LH +++ R A L L+ GA+V++ G S L A + GK+G V +VDLLLRWGADET + +G R D +G +V E+ R +E + +R+LL NAPADRAWRRR LVLCR
Sbjct: 163 ALDIGAGEGHVDFIRTLIEHGADVDATNYGGVAALHHATANNKVEAMDVLLRAGANARSMSES---GHTVLHMAAITRTRTEAATLAVLLKHGADVNAQTVGGTSVLEYVATRAGKQGIVEVVDLLLRWGADETHVAGNGMRAADAIG--MKVPEED-RIPEEFEGVRKLLANAPADRAWRRRCSLVLCRA 347
BLAST of mRNA_P-lacustris_contig1016.242.1 vs. uniprot
Match: A0A6H5K8N6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8N6_9PHAE) HSP 1 Score: 126 bits (317), Expect = 8.170e-27 Identity = 109/315 (34.60%), Postives = 156/315 (49.52%), Query Frame = 2
Query: 617 LHQAVREGHTQVVEDILRREQPGTAAAVSSVNESGDDCIHVAAKLGYAEIVSLLVHHGAEKNGLGSRSRTPLHLACIYGHLQAVDVLLGAGADVSIVLRDASGYEHWALSFSARMGHVDVLKSLLRHGADVRQAG-ARGLTALHYAA-VRNQAGTVRALVEAGADIEAAVDDDGGGGTPLHASSVMRC-------YDAALALLRCGANVDSVNA-FGYSPLHGAARQGGKEGSVRMVDLLLRWGADETAIDRDGNRP-----IDVVGNSSRVEEDSGR--QKDEIDSLRELLENAPADRAWRRRGFLVLCRVYLQ 1510
L +AV + Q+V D+L G E G +HVA+ G+ I++ L+ GA ++ + +R PLH A + A + LL AGA + D+S + L +A G +D++ LL+HG DV G TALH AA + A V ALV+AGA+I D GG+PLH ++ R ++ LALL+ GA+V+ V++ +PL A Q G +VDLLLRWG D+T + DG +D +++ E Q DEI R LL A DRAWRRR V+ R + Q
Sbjct: 36 LFEAVSDEQEQIVADLLAA---GACPNARFGGEEGYAPLHVASSRGHVGILTTLLSFGAHRDAVDNRGARPLHHAIAEDRVAATEALLVAGA-LGATPEDSSSFR--PLVLAACKGSIDIINVLLKHGVDVNSRDDVVGATALHAAANCASGASAVHALVDAGAEINVQRKD---GGSPLHYAAASRASSSPSSPFETILALLQRGASVNQVHSGTAQTPLL-LACQHRPRGLGSVVDLLLRWGGDDTVVGGDGRTASELLELDQHHHATETEHHQCHLEQDDEIGRARTLLSRAKEDRAWRRRCLPVMLRAHQQ 340
BLAST of mRNA_P-lacustris_contig1016.242.1 vs. uniprot
Match: D7FXA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA8_ECTSI) HSP 1 Score: 127 bits (318), Expect = 1.180e-26 Identity = 137/459 (29.85%), Postives = 195/459 (42.48%), Query Frame = 2
Query: 590 VTADTLRAQLHQAVREGHTQVVEDILRREQPGTAAAVSSVNESGDDCIHVAAKLGYAEIVSLLVHHGAEKNGLGSRS---RTPLHLACIYG------------------HLQAVDVLLGAGADVSIVLRDASGYEHWALSFSARMGHVDVLKSLLRHGADVRQAGARGLTALHYAAVRNQAGTVRALVEAGADIEAAVDDDGGGGTPLHASSVMRCYDAALALLRCGANVDSVNAFGYSPLHGAARQGGKEGSVRMVDLLLRWGADETAIDRDGNRPIDVVGNSSRVEEDSGRQKD----EIDSLRELLENAPADRAWRRRGFLVLCRVYLQQRFHGLHQQQRLSAEEVVALKRDSLCNGLPARRGSKTGDPENKMWSELARTELAPQTPKTLSGSSTSGGGGTLSPCETAKPAEQKLGRSEARGDVRIPGNGDDFGSALVRLIDFPEEGVFRNAVSFL 1891
V + T R+ L+Q+V H ++ V +++G + A K G ++V L+ GA N + S TPLH A G H+ V VLL AGAD I RD H AL F+A+ +DV+K+LL HG DV G LH+AA N G + L++AGADI+ G T LH ++ +A LALLR GANV G + LH + G VD+LLR GA E A+DR+G P+D+ R + + D E++ ELL APADR WRRR +L++ R +R + E + +G R+G K G+ E + + R GG + ++ GRS RG R D G V L+ +GVFR + ++
Sbjct: 98 VASSTGRSALYQSVLGKHEAAARKLILA--GADVNFVDRADKAGP--LFAAVKAGCDDLVGNLLMAGANPNVIVRHSFGHGTPLHAAAKQGLANTASVLLSSPSTDKNGHVATVKVLLAAGADTDI--RDLDS--HSALVFAAQYERIDVMKALLEHGVDVN-VGEDHWNPLHWAAQFNSTGCITVLLDAGADIDVKCSFLDGR-TSLHFAAETGNNEALLALLRRGANVHQTTDDGSTALHLVSEMEG-HAPDDTVDILLRRGASEQAVDRNGKAPVDLFKRVQRRFQSARPMGDSEWPELERAIELLARAPADRTWRRRCWLIMLR-------------ERTNKERTI--------HGGRRRKGKKVGNGEGLLLGDGKR-----------------GGSNNV----------RRSGRSRGRGGGRAAVEVDLRGLVSV-LVCLESDGVFRTILGYI 496
BLAST of mRNA_P-lacustris_contig1016.242.1 vs. uniprot
Match: D7FLL7_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL7_ECTSI) HSP 1 Score: 123 bits (308), Expect = 1.990e-25 Identity = 114/303 (37.62%), Postives = 152/303 (50.17%), Query Frame = 2
Query: 617 LHQAVREGHTQVVEDILRREQPGTAAAVSSVNESGDDC----IHVAAKLGYAEIVSLLVHHGAEKN-GLGSRS-RTPLHLACIYGHLQAVDVLLGAGADVSIVLRDASGYEHWALSFSARMGHVDVLKSLLRHGADVRQAGARGLTALHYAAV-RNQAG-TVRALVEAGADIEAAVDDDGGGGTPLHASSVMRCYDAALALLRCGANV-DSVNAFGYSPLHGAARQGGKEGSVRMVDLLLRWGADETAIDRDGNRPIDVVGNSSRVEEDSGRQKDEIDSLRELLENAPADRAWRRRGFLVLCR 1498
L QA++ HTQ V+D+L A ++ DDC + AA +VS L+ A+ N GLG TPL LA GHL V+ LL AGAD S LR Y D + G TALH A + ++AG V LV+A AD E GG TPLHA++ + ALL+ A+V + +A G +PLH A + +EG +DLLLRWGADETA ++ G P+DV+G ++R + + DE+D R LL AP DR WRRRG+LV+ R
Sbjct: 143 LSQAIQGSHTQFVDDLL------IGGARPNIR---DDCGMAPLQAAALFAEEGVVSALLLAKADVNVGLGKTMYETPLMLAVRRGHLAIVETLLEAGADCS--LRQLEDYSXXXXXXXXXXXXXXXXXXXXXXXVDAQDRA--GCTALHTAILFSDRAGPAVHMLVKARADTEL---KSVGGWTPLHAAAEHHRVNCVAALLQNNASVRNRFDATGDTPLHRACVEQ-REGLAASIDLLLRWGADETARNKRGRTPLDVLG-ATRTD-NPHCSPDEVDRARLLLVRAPTDRRWRRRGWLVVLR 426
BLAST of mRNA_P-lacustris_contig1016.242.1 vs. uniprot
Match: A0A6H5KFY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFY7_9PHAE) HSP 1 Score: 117 bits (294), Expect = 1.110e-24 Identity = 90/242 (37.19%), Postives = 123/242 (50.83%), Query Frame = 2
Query: 776 LVHHGAEKNGLGSRSRTPLHLACIYGHLQAVDVLLGAGADVSIVLRDASGYEHWALSFSARMGHVDVLKSLLRHGADVRQAGARGLTAL-HYAAVRNQAGTVRALVEAGADIEAAVDDDGGGGTPLHASSVMRCYDAALALLRCGANVDSVNAF-GYSPLHGAARQGGKEGSVRMVDLLLRWGADETAIDRDGNRPIDVVGNSSRVEEDSGRQKDEIDSLRELLENAPADRAWRRRGFLVLC 1495
L+ GA + G P+H A +G + V L G D + V + E L + + HV ++ +LL GADV R L H AA+ N A + AL +AG IE G TPL ++ +A LALL+ GANV+S N G SPL A R+G + DLLLRWGADETA+D D + ++ + R+ + + ++ + ELL AP DRAWRRRGFLV C
Sbjct: 11 LLLSGANPSKAGFEGWFPIHFAAHHGLDEVVVSLFHKGIDPTCV----TTREETHLLLAVKRNHVAIINALLAEGADVNFLTTRRPVPLAHIAALHNNAAAMPALFKAGVYIEGRSPK---GRTPLQNAAFCGSCEAMLALLQLGANVNSKNTINGLSPLCSACREGHHD----AADLLLRWGADETAVDSDEKTIVSMM--THRIFRAAVASRQRLERVSELLARAPQDRAWRRRGFLVPC 239
BLAST of mRNA_P-lacustris_contig1016.242.1 vs. uniprot
Match: D8LE08_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE08_ECTSI) HSP 1 Score: 117 bits (294), Expect = 6.790e-24 Identity = 108/318 (33.96%), Postives = 146/318 (45.91%), Query Frame = 2
Query: 590 VTADTLRAQLHQAVREGHTQVVEDILRREQPGTAAAVSSVNESGDDCI--HVAAKLGYAEIVSLLVHHGAEKNGLGSRSRTPLHLACIYGHLQAVDVLLGAGADVSIVLRDASGYEHWALSFSARMGHVDVLKSLLRHGADVR----QAGARGLTALHYAAVRNQAGTVRALVEAGADIEAAVDDDGGGGTPLHASSVMRCYDAALALLRCGANVDSVNAFGYSPLHGAARQGGKEGSVRM-VDLLLRWGADETAIDRDGNRPID-------VVGNSSRVEEDSGRQKDEIDSLRELLENAPADRAWRRRGFLVLCRV 1501
V+ + R+ LH AV GH ++ A A + GD C+ HVAA+ G+ ++V L+ GA N RTPLH+A G+ + V LLG D S + H L ++ GH +++LLR GAD G + AL A G V + GG PLHAS+V + +ALL+ N D + G S LH A G G+ R VDLLLRWGA ETA+D G P D V +S+ +S + + E+ LL APADRAWRRR +LV+ R
Sbjct: 100 VSVSSKRSALHLAVVCGHEAAARTLM------IAGANIRRVDPGDQCVPFHVAAEGGHGDLVGNLLIGGACPNSRTRFGRTPLHVAAAVGNSRVVSTLLG---DTSTSINARDNDLHSPLMLASANGHRSTVEALLRAGADTTLRCYSGGVSDMAALEMAG-----GEVVDVXXXXXXXX--XXXXAGGSIPLHASAVHGHDETMVALLKREGNFDEQDNAGRSALHWACI-GCLSGTGRTAVDLLLRWGASETALDTRGETPSDYLRRGAAAVASSNVTPRNSEKMQREMQRALVLLARAPADRAWRRRCWLVMLRA 400 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1016.242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1016.242.1 >prot_P-lacustris_contig1016.242.1 ID=prot_P-lacustris_contig1016.242.1|Name=mRNA_P-lacustris_contig1016.242.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=506bp MMPNTRAIRLRRLRLRAKARRLLQTARALSRVDASAATHPGRQRLSASSSback to top mRNA from alignment at P-lacustris_contig1016:2926..8888+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1016.242.1 ID=mRNA_P-lacustris_contig1016.242.1|Name=mRNA_P-lacustris_contig1016.242.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=5963bp|location=Sequence derived from alignment at P-lacustris_contig1016:2926..8888+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1016:2926..8888+ >mRNA_P-lacustris_contig1016.242.1 ID=mRNA_P-lacustris_contig1016.242.1|Name=mRNA_P-lacustris_contig1016.242.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=3036bp|location=Sequence derived from alignment at P-lacustris_contig1016:2926..8888+ (Pleurocladia lacustris SAG_25_93)back to top |