mRNA_P-lacustris_contig1015.241.1 (mRNA) Pleurocladia lacustris SAG_25_93
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1015.241.1 vs. uniprot
Match: D8LI48_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI48_ECTSI) HSP 1 Score: 447 bits (1150), Expect = 1.910e-134 Identity = 681/956 (71.23%), Postives = 722/956 (75.52%), Query Frame = 1 Query: 655 EGVKGNVYIYNTAIAAMARCGRPLEAEALLTVMLERDSVAPDTISXXXXXXXXXXXXXLDAARRLLGRMTELASSGALLHXXXXXXXXXXXXXXXXXXXXXXXXXXQAMTKAGVTPNIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDWTAALQLLQEMKRGVAAANIAKEEGGG--MGVEAPPPPDIVSYASAITACARARRVDEALELLSELRINEAHAAAAAVRGGLGKGGGRRVGFPVPNLVAYSAALFACLNAGDVQRGAELLDEMIAAGVKPNKIHCDTMVAAWCAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVGINRRRYVNWAPKLANIARLLQNGPGAEGAANTTQEAVTKAEADGCREGDEGKGGGEDGWGR-------SPDELECSIEALGDADDAGSASRLLRVMRREGFHASPRAYRSVIYACARVGLLNEAMALAKEMQSSGSNGVAKQKD----------RWEEPPLSSPCKDDCDVESKSIA---------ALSSGGPLAAHEKASRSEAVFVQQG-SEDIEIEAGTGGGALELVIYGFPLKDKISVVDSNNASTNVGNAYYKINNRRGVVDEDEDEADFDIAVVYNCIICNFARAATGDNSSLGVGHICDHRAGRASVRATGLAVAEKASASXXXXXXXXXXXXXXXXQQIMTGDAGDRGRMEARMGSSDGRGEGLVALLYGVAERAEGSLTDEAANGGVEIGQEE 3435
+GV+GNVYIYNTAIAAMARCGRP EAEALLTVMLERDS+APDTISXXXXXXXXXXXXX DAARRLLGRMTELAS GALLHXXXXXXXXXXXXXXXXXXXXXXXXXX+ M +AGVTPNIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DWTAA+QLLQEMK GVA A GGG GVE PPPD+VSYASAITACARARRVDEAL LLSELR+NEA AAAAA AGDV GAELLDEMIAAG++PNKIHCDTMVAAW AEG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VGINRRRY +WAP+LANIARLLQNGPG+ G SP+EL+CSIEALGDADDAG A+ LLRVMRREGFHASPRAYRSV+YACARVGLL+EAM LAKEMQSS S+ A Q+ R +EPP S DDC+VE++SIA AL G L A A F ++G E+ E EA GG A ELV P S D + V + + N G V+EDED A+FD+A+VYNCIICNFARAATGD G G +CDHR GRA A+ LAVAEKA+A + +G D GR EAR G D GEGLVALL+GVAERAEGSLTDEAANGGVEI +E
Sbjct: 51 KGVEGNVYIYNTAIAAMARCGRPREAEALLTVMLERDSIAPDTISXXXXXXXXXXXXXXDAARRLLGRMTELASGGALLHXXXXXXXXXXXXXXXXXXXXXXXXXXKMMAEAGVTPNIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWTAAVQLLQEMKLGVAGAASGGAPGGGGTAGVEVAPPPDVVSYASAITACARARRVDEALGLLSELRVNEAQAAAAA--------------------------------AGDVACGAELLDEMIAAGLRPNKIHCDTMVAAWSAEGKPERAVALMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGINRRRYTDWAPELANIARLLQNGPGSHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPEELDCSIEALGDADDAGGATNLLRVMRREGFHASPRAYRSVVYACARVGLLDEAMTLAKEMQSSSSSAFAAQRQQADVEPPKRLREQEPPSS--FNDDCEVENRSIAEETRADEPPALGDGASLGA-------AASFAERGLEEETEREARNGGVASELVPRRVPSTGAASGEDCVEEGSLVA-SNDRGNGNLGAVNEDEDGAEFDLAMVYNCIICNFARAATGDGG--GAGGVCDHRVGRAPAGASVLAVAEKAAA-VAASAVAEETGVGGGERGGRSGPGKDGGRAEARGG--DVPGEGLVALLFGVAERAEGSLTDEAANGGVEIDHDE 959 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1015.241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1015.241.1 >prot_P-lacustris_contig1015.241.1 ID=prot_P-lacustris_contig1015.241.1|Name=mRNA_P-lacustris_contig1015.241.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=915bp MARCGRPLEAEALLTVMLERDSVAPDTISYNSAINAYARCGDLDAARRLLback to top mRNA from alignment at P-lacustris_contig1015:63391..69512+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1015.241.1 ID=mRNA_P-lacustris_contig1015.241.1|Name=mRNA_P-lacustris_contig1015.241.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=6122bp|location=Sequence derived from alignment at P-lacustris_contig1015:63391..69512+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1015:63391..69512+ >mRNA_P-lacustris_contig1015.241.1 ID=mRNA_P-lacustris_contig1015.241.1|Name=mRNA_P-lacustris_contig1015.241.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=5490bp|location=Sequence derived from alignment at P-lacustris_contig1015:63391..69512+ (Pleurocladia lacustris SAG_25_93)back to top |