mRNA_P-lacustris_contig1014.233.1 (mRNA) Pleurocladia lacustris SAG_25_93
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1014.233.1 vs. uniprot
Match: A0A6H5KXT6_9PHAE (START domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXT6_9PHAE) HSP 1 Score: 512 bits (1319), Expect = 4.550e-166 Identity = 318/554 (57.40%), Postives = 355/554 (64.08%), Query Frame = 2 Query: 134 PIPPM---SGAAGTRLV---VLLLLFVGSTDASLFKRKRHGGAAQQ---GGPIGKGXXXXXXXXXXKVKEDVAWLLEDTSDGGWKPVRDDGHVQVWKRSMPNSDFVAIKSKASLAVSPQALFEVLTPGDIEIVRQYNPLVEDGSDLEVIDRDNKVSWSATMGIWPCRPRDFVTHIQRATLDDNSVAIVNSATTHPKAPVTGKYVRGEILHGVFHIKASKDKRHSELTMVHHFNPGGNIPPWLMNWLAEGKPITFVRKLEEVAQKWDRQAALTKHMPCKGRGFADMPCAFLVPSADNGSDPPDDALSSGGAVASGG-EWGSSLAALILMALIFGGWVVLFGWPGSSKKIGEEKSSTAATSEGNRHWGQNGSPRSGVSLPTKHVWPETVSMGELSGIPRRVGLEAEDSAEGDRAKAVAEDSSRREAKYSGGPNGGAHNGNPPTV--GKSRTTTSSGQVGNKGSANAEKQTALPVPVTPVGGMPGKENGGLVTRA-----SPTSHEEPGPCSQDKGTAGRELGSGEAVAISGSGGVAKVTNGG-LAAEEEIREEVGD 1741
PIP AA RLV VLLL +G T ASLFKRKR G P GKG XXX KVKEDVAWLLEDTSDGGWKPVRDDGHVQVWKRSMPNSDFVAIKSKASLAVSPQALFEVLTPGDIEIVRQYNPLVEDG DLEVIDRDNKVSWSATMGIWPCRPRDFVTHIQRATL+D SVAIVNSAT+HPKAPV KYVRGEILHGVFHIKA+K+K+HSE TMVHHF+PGGNIPPWLMNWLAEGKPITFVRKLEEVA+KWD+QAALTK MPCKGRGFAD PC FL+P+ D+ + A + A SGG EWGS + AL L AL+ W + F P K GE ++ + ++ +P + V+LP K + E G+P V A A D KA + R+AK GP+G H + P G G++G A AEK+ P P P +E GGLV RA S S EEP D GE SGG +VTN G A + E GD
Sbjct: 3 PIPRRRWNGSAAAARLVLGLVLLLTVMGPTGASLFKRKRTNSKEVHPSGGVPFGKGGKXXXRG---KVKEDVAWLLEDTSDGGWKPVRDDGHVQVWKRSMPNSDFVAIKSKASLAVSPQALFEVLTPGDIEIVRQYNPLVEDGIDLEVIDRDNKVSWSATMGIWPCRPRDFVTHIQRATLEDGSVAIVNSATSHPKAPVGEKYVRGEILHGVFHIKAAKNKKHSEFTMVHHFSPGGNIPPWLMNWLAEGKPITFVRKLEEVAKKWDQQAALTKSMPCKGRGFADKPCDFLLPTGDSSEEGDTLAAPARAAAGSGGGEWGSLVKALTLAALLAYAWALFFDRPAVFGKKGEPSAAGSGRMPAEE---KSVTPHTRVALPAKREKLAVILREESVGVPAVVTSGAVPHAHADGEKAGPDG---RDAKDLRGPSGDVHREDVPMAEGGDGEVVPGRGELGG---ATAEKEDPSPAPARET---PREECGGLVERAEVPPASSGSREEPDTSFLD----------GEVEGAISSGGSVEVTNSGPTAVASTVGGEAGD 531
BLAST of mRNA_P-lacustris_contig1014.233.1 vs. uniprot
Match: D7G7Z6_ECTSI (START domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Z6_ECTSI) HSP 1 Score: 487 bits (1253), Expect = 1.490e-156 Identity = 300/532 (56.39%), Postives = 337/532 (63.35%), Query Frame = 2 Query: 194 VGSTDASLFKRKRHGGAAQQ---GGPIGKGXXXXXXXXXXKVKEDVAWLLEDTSDGGWKPVRDDGHVQVWKRSMPNSDFVAIKSKASLAVSPQALFEVLTPGDIEIVRQYNPLVEDGSDLEVIDRDNKVSWSATMGIWPCRPRDFVTHIQRATLDDNSVAIVNSATTHPKAPVTGKYVRGEILHGVFHIKASKDKRHSELTMVHHFNPGGNIPPWLMNWLAEGKPITFVRKLEEVAQKWDRQAALTKHMPCKGRGFADMPCAFLVPSADNGSDPPDDALSSGGAVASGG---EWGSSLAALILMALIFGGWVVLFGWPGSSKKIGEEKSSTAATSEGNRHWGQNGSPRSGVSLPTKHVWPETVSMGELSGIPRRVGLEAEDSAEGDRAKAVAEDSSRREAKYSGGPNGGAHNGNPPTVGKSRTTTSSGQVGNKGSANAEKQTALPVPVTPVGGMPGKENGGLVTRA------SPTSHEEPGPCSQDK-----GTAGRELGSGEAVAISGSGGVAKVTNGGLAAEEEIREEVG 1738
+G T ASLFKRKR Q G P GKG KVKEDVAWLLEDTSDGGWKPVRDDGHVQVWKRSMPNSDFVAIKSKASLAVSPQALFEVLTPGDIEIVRQYNPLVEDG DLEVIDRDNKVSWSATMGIWPCRPRDFVTHIQRATL+D SVAIVNSAT+HPKAP GKYVRGEILHGVFHIKA+K+K+HSE TMVHHF+PGGNIPPWLMNWLAEGKPITFVRKLEEVA+KWDRQAALTK MPCKGRGFAD PCAFL+P+ D+ + D L+ EWGS + AL + AL+ W + F K GE ++ ++G+ S V+LP KH +S + +G+P V A A D KA + R+ K GP+G + + G+ G A AEK+ P TP P +E G L RA S S EEP D G AG+ GS IS GGV +G A I E G
Sbjct: 1 MGPTGASLFKRKRTNSKEVQPSGGVPFGKGGKRG------KVKEDVAWLLEDTSDGGWKPVRDDGHVQVWKRSMPNSDFVAIKSKASLAVSPQALFEVLTPGDIEIVRQYNPLVEDGIDLEVIDRDNKVSWSATMGIWPCRPRDFVTHIQRATLEDGSVAIVNSATSHPKAPAGGKYVRGEILHGVFHIKAAKNKKHSEFTMVHHFSPGGNIPPWLMNWLAEGKPITFVRKLEEVAKKWDRQAALTKSMPCKGRGFADKPCAFLLPTGDSSEE--GDTLAXXXXXXXXXXXXEWGSLVKALTMAALLAYAWALFFDRRAVFGKKGEPSAAGPGRMPAEE---KSGTLHSRVALPAKHEKLAVISREQSAGVPAVVISGAVPHAHADGEKAGPDG---RDVKDLRGPSGDVQHDDVLMAEGGGGEVVPGR-GELAGATAEKEDPSP---TPAREAPREECGALAERAEVPPASSSDSREEPDTSFLDGEIANGGIAGQVEGS-----ISRGGGVEVTNSGPTAVASAIGGEAG 509
BLAST of mRNA_P-lacustris_contig1014.233.1 vs. uniprot
Match: A0A835YMA7_9STRA (START domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMA7_9STRA) HSP 1 Score: 216 bits (551), Expect = 6.630e-57 Identity = 118/287 (41.11%), Postives = 168/287 (58.54%), Query Frame = 2 Query: 170 LVVLLLLFVGSTDASLFKRKRHGGAAQQGGPIGKGXXXXXXXXXXKVKEDVAWLLEDTSDGGWKPVRDDGHVQVWKRSMPNSDFVAIKSKASLAVSPQALFEVLTPGDIEIVRQYNPLVEDGSDLEVIDRDNKVSWSATMGIWPCRPRDFVTHIQRATLDDNSVAIVNSATTHPKAPVTGK---YVRGEILHGVFHIKASKDKRH-SELTMVHHFNPGGNIPPWLMNWLAEGKPITFVRKLEEVAQKWDRQAALT-------------KHMPCKGRGFADMPCAFLV 979
+++++LL V S +A + +++H + K + +D+ WLL + + GW+PV D G QVWK +MP+S F+ +K+ A++ SP AL EVL PG+++IV+ YNP++ +G D+E + RD+K+SWS+TM +WPCR RDFVT I R L D AI+ ATTHP+ P G VR EILHG+F ++ + H S+ TMV H NPGG IP WL N LA P +FV L VAQ++D AA T + PC RGF PC +L+
Sbjct: 9 VLLVVLLLVSSVEA--WPKRKH---------VDKDTKQRNQALSAEALKDMEWLL--SGELGWEPVLD-GETQVWKMTMPDSAFIFVKAMATIDASPVALREVLAPGELDIVKMYNPVITEGRDIEYLGRDSKISWSSTMPMWPCRGRDFVTFINRIRLPDGGTAIIQKATTHPQYPAPGPGYDTVRAEILHGLFLVQPVPGESHRSQFTMVQHLNPGGKIPAWLTNQLAARTPASFVTALGRVAQRFDAVAAATANDATTTKGSKGSRSGPCFDRGFDSPPCPWLL 281
BLAST of mRNA_P-lacustris_contig1014.233.1 vs. uniprot
Match: A0A7S4NFJ2_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NFJ2_GUITH) HSP 1 Score: 100 bits (248), Expect = 1.960e-19 Identity = 59/211 (27.96%), Postives = 99/211 (46.92%), Query Frame = 2 Query: 320 VAWLLEDTSDGGWKPVRDDGHVQVWKRSMPNS------------DFVAIKSKASLAVSPQALFEVLTPGDIEIVRQYNPLVEDGSDLEVIDRDNKVSWSATMGIWPCRPRDFVTHIQRATLDDNSVAIVNSATTHPKAPVTGKYVRGEILHGVFHIKASK------DKRHSELTMVHHFNPGG----NIPPWLMNWLAEGKPITFVRKLEE 886
V +L + W + D ++VW+ +P S F + S L P+ ++ D V +YN + DLE +D + K++WSA+ + P + RDFVT + T D S+ I N A HPKAP T +++R EI+ G ++ ++ D + +T++ H NPGG + ++N A PI F++ L +
Sbjct: 14 VEKILTICGEASWTQISDSDGIKVWRTMLPESLQIAGRPLGPSAKFFCVMSSGILDAPPEQVYTYFV--DNSRVHEYNEFCKQVKDLEYLDANTKITWSASGRVGPFKERDFVTRVHYRTASDGSLIIANRAEKHPKAPETERFLRMEIMIGGNVLRPAREADGSLDHSRTNITVLTHVNPGGIAETRLGTMILNSAAASGPIKFIQGLRQ 222
BLAST of mRNA_P-lacustris_contig1014.233.1 vs. uniprot
Match: A0A7S0I3S0_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0I3S0_9CRYP) HSP 1 Score: 104 bits (260), Expect = 2.600e-19 Identity = 79/291 (27.15%), Postives = 127/291 (43.64%), Query Frame = 2 Query: 83 GGCSI*SIKLSEEANSRPIPPMSGAAGTRLVVLLLLFVGSTDASLFKRKRHGGAAQQGGPIGKGXXXXXXXXXXKVKED-VAWLLEDTSDGGWKPVRDDGHVQVWKRSMPNSDFVA------------IKSKASLAVSPQALFEVLTPGDIEIVRQYNPLVEDGSDLEVIDRDNKVSWSATMGIWPCRPRDFVTHIQRATLDDNSVAIVNSATTHPKAPVTGKYVRGEILHG------VFHIKASKDKRHSELTMVHHFNPGG----NIPPWLMNWLAEGKPITFVRKLEE 886
GG + + + S + P + RL+ + G+ +A K G +GG GK V +D V +L S+ W + D ++VW+ +P+S VA + S L P+ ++ D V +YN + DLE +D + K++WSA+ + P + RDFVT + T D S+ I N A THP AP T +++R EI+ G V S D + +T++ H NPGG + ++N A PI F++ L +
Sbjct: 299 GGVEVNETEAGKAGESLEVAPPEASWYWRLIRRVACCTGAQEADE-GAKNAGLLKGKGGDEGK-----ELTGLDAVNDDLVEKILTICSEASWTQISDSDGIKVWRTMLPDSLLVAGRPLGPSAKFYCVMSSGVLDAPPEQVYTYFV--DNSRVHEYNEFCKQVKDLEYLDANTKITWSASGRVGPFKERDFVTRVHYRTAPDGSLIIANRAETHPTAPETDRFLRMEIMIGGNVLRPVREEDGSLDHSRTNITVLTHVNPGGIAETRLGTMILNSAAASGPIKFIQGLRQ 581
BLAST of mRNA_P-lacustris_contig1014.233.1 vs. uniprot
Match: A0A7S4K5H3_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4K5H3_GUITH) HSP 1 Score: 84.3 bits (207), Expect = 6.200e-15 Identity = 46/152 (30.26%), Postives = 72/152 (47.37%), Query Frame = 2 Query: 320 VAWLLEDTSDGGWKPVRDDGHVQVWKRSMPNS------------DFVAIKSKASLAVSPQALFEVLTPGDIEIVRQYNPLVEDGSDLEVIDRDNKVSWSATMGIWPCRPRDFVTHIQRATLDDNSVAIVNSATTHPKAPVTGKYVRGEILHG 739
V +L + W + D ++VW+ +P S F + S L P+ ++ D V +YN + DLE +D + K++WSA+ + P + RDFVT + T D S+ I N A HPKAP T +++R EI+ G
Sbjct: 14 VEKILTICGEASWTQISDSDGIKVWRTMLPESLQIAGRPLGPSAKFFCVMSSGILDAPPEQVYTYFV--DNSRVHEYNEFCKQVKDLEYLDANTKITWSASGRVGPFKERDFVTRVHYRTASDGSLIIANRAEKHPKAPETERFLRMEIMIG 163
BLAST of mRNA_P-lacustris_contig1014.233.1 vs. uniprot
Match: B8CFB1_THAPS (START domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CFB1_THAPS) HSP 1 Score: 82.4 bits (202), Expect = 3.390e-12 Identity = 66/257 (25.68%), Postives = 103/257 (40.08%), Query Frame = 2 Query: 335 EDTSDGGWKPV----------RDDGHVQVWKRSMPNS------------DFVAIKSKASLAVSPQALFEVLTPGDIEIVRQYNPLVEDGSDLEVIDRDNKVSWSATMGIWPCRPRDFVTHIQRATLDDNSVAIVNSATTHPKAPVT-----GKYVRGEILHGVFHIKASKDKRH-SELTMVHHFNPGGNIPPWLMNWLAEG----KPITFVRKLEEVAQKWDRQAALTKHMPC---------KGRGFADMPCAFLVP 982
E+ + GWK + DG +V+ + +P+S ++ IK +++ + L + + V QYN LVED +D+EVI +K++W+ + +PRDFVT D + IVN A H P G RG L G I D H + +T++ H NPGG +P W +N +P + E A + A+ + K G A M A+ P
Sbjct: 489 EERAGDGWKTISCNSFVKKKFNKDGRTEVYLKWLPDSREEYVDKDNAEQEYPCIKCYSTIDAPMDQVCAFLA--NEKTVPQYNELVEDHADVEVITPHSKITWTLMPKVLFVKPRDFVTFCSHRWKRDGTQVIVNQACDHEDVPGNMVEGEGDVTRGFALRGANFISKDPDDPHKTRITILAHANPGGGLPQWALNTAVNAAVQIEPFKLFYSINEGASNYKESASFSPQTTTMNSLPGRSTKPAGMAQMGYAYFWP 743
BLAST of mRNA_P-lacustris_contig1014.233.1 vs. uniprot
Match: A0A3P6T7K2_LITSI (START domain-containing protein n=1 Tax=Litomosoides sigmodontis TaxID=42156 RepID=A0A3P6T7K2_LITSI) HSP 1 Score: 78.2 bits (191), Expect = 7.630e-12 Identity = 57/194 (29.38%), Postives = 97/194 (50.00%), Query Frame = 2 Query: 353 GWKPVRDDGHV-QVWKRSMPNSDFVAIKSKASLAVSPQAL-FEVLTPGDIEIVRQYNPLVEDGSDLEVIDRDNKVSWSATMGIWPCRPRDFVTHIQRATLDDNSVA-IVNSATTHPKAPVTGKYVRGEILHGVFHIKASKDKRHSELTMVHHFNPGGN-------IPPWLMNWLAEGKPITFVRKLEEVAQKWD 904
GWK V VW +S+PNS+ IK+KA L P + ++VL D + +++ D+ +I+ +N + + A GI P +PRDFV +QR+ LD+ I + H K P Y+RG + ++I+ + D+ ++T ++H +PGG +P WL N LA+ ++ L K++
Sbjct: 42 GWKVAYSKKDVVNVWTKSVPNSNLQMIKAKAVLTGVPASTAYDVLH--DPQYRSKWDKYHVATVDVGLINPNNDICYYAVGGIPPLQPRDFV--LQRSWLDNGKEKYICGHSVCHKKCPPVKGYIRGIVYLTAYYIR-NTDENSCQITYINHSDPGGTDIRFSGKVPTWLTNHLAKVIGPKLIKNLHNACLKYE 230
BLAST of mRNA_P-lacustris_contig1014.233.1 vs. uniprot
Match: A0A448ZKN5_9STRA (START domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZKN5_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 4.220e-8 Identity = 51/191 (26.70%), Postives = 83/191 (43.46%), Query Frame = 2 Query: 506 RQYNPLVEDGSDLEVIDRDNKVSWSATMGIWPCRPRDFVTHIQRATLDDNSVAIVNSATTHPKAP--VTGKYVRGEI----------LHGVFHIKASKD--KRHSELTMVHHFNPGGNIPPWLMNW----LAEGKPITFVRK-----------LEEVAQKWDRQAALTKHMP--CKGRGFADMPCAFLVPS 985
R+YN L+ D D+EV+ +K+ WS + + +PRDFVT+ + L D + I N A HP A +TG + I L G ++ D + +++ M+ H N G ++P W + LA KP + + LE +K + + +T C+ G A M A P+
Sbjct: 170 REYNSLLIDQEDVEVLTPHSKICWSQSKKLLFIQPRDFVTYCRHRWLKDGTQLITNQACDHPNATLNITGSNGQNSIRNLSGYRAFSLRGATYVSRCPDFPSKRTKIVMLSHCNCGRDVPEWAVRAAVGVLAPIKPFEIIHRIDVGIRKARNELEMAEEKQNANSVMTTDTSRSCRPAGMAQMGYACFWPN 360
BLAST of mRNA_P-lacustris_contig1014.233.1 vs. uniprot
Match: A0A3N7D178_9SPHI (Lipid-binding protein n=1 Tax=Pedobacter sp. KBW06 TaxID=2153359 RepID=A0A3N7D178_9SPHI) HSP 1 Score: 63.2 bits (152), Expect = 2.520e-7 Identity = 48/212 (22.64%), Postives = 91/212 (42.92%), Query Frame = 2 Query: 320 VAWLLEDTSDGGWKPVRDDGHVQVWKRSMPNSDFVAIKSKASLAVSPQALFEVLTPGDIEIVRQYNPLVEDGSDLEVIDRDNKVSWSATMGIWPCRPRDFVTHIQRATLDDNSVAIVNSATTHPKAPVTGKYVRGEILH--GVFHIKASKDK--------RHSELTMVHHFNPGGNIPPWLMNWLAEGKPITFVRKLEEVAQKWD-RQAALT 922
+A + + W P + ++++ PNS A+K++ ++ + + +L D+E + + S ++ + +S WP + RDFV H++ V+ T + G VRG++ G+ I+ SK K + + H +PGG +PPWL+N A P+ ++ L+ QK + + A LT
Sbjct: 12 IAKTVPVLAQNNWVPEVEKEGIKIYTAVFPNSRIKAVKAQCNVKATASQVVALLM--DVESATDWVYHTKSCSLIKKVSPAELYYYSEISLPWPLQNRDFVAHLK-----------VSQNTGTKVVTIDGPAVRGQVAEKKGIVRIQDSKGKWVISPAGPDYVNIEYTIHVDPGGTLPPWLINLFASEGPLKIIKNLKIQVQKPEYKNAVLT 210 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1014.233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1014.233.1 >prot_P-lacustris_contig1014.233.1 ID=prot_P-lacustris_contig1014.233.1|Name=mRNA_P-lacustris_contig1014.233.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=584bp MSGAAGTRLVVLLLLFVGSTDASLFKRKRHGGAAQQGGPIGKGGKGGKGGback to top mRNA from alignment at P-lacustris_contig1014:63675..71136- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1014.233.1 ID=mRNA_P-lacustris_contig1014.233.1|Name=mRNA_P-lacustris_contig1014.233.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=7462bp|location=Sequence derived from alignment at P-lacustris_contig1014:63675..71136- (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1014:63675..71136- >mRNA_P-lacustris_contig1014.233.1 ID=mRNA_P-lacustris_contig1014.233.1|Name=mRNA_P-lacustris_contig1014.233.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=3504bp|location=Sequence derived from alignment at P-lacustris_contig1014:63675..71136- (Pleurocladia lacustris SAG_25_93)back to top |