Homology
BLAST of mRNA_P-lacustris_contig1014.231.1 vs. uniprot
Match:
D7G7Z4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Z4_ECTSI)
HSP 1 Score: 117 bits (294), Expect = 1.760e-27
Identity = 78/115 (67.83%), Postives = 83/115 (72.17%), Query Frame = 1
Query: 535 MVPGAGVVRHGKRKAEHERHTSSSKKAMEVYCGEAGAMTSRGGLRGGGGRS--GDNSGEEATDDESEFSSVDGRTSPSQ-PGAWGAATAGEGARG-HFNPAGPHGFAVAAAAGLN 867
MVPGAGV RHGKRKAEHER+ S+SKKAME Y G AG G+ GGGRS GDNSGEEATDDESEFSSVDGRTSPSQ PGAWG A + G HF+P A AAAAG N
Sbjct: 1 MVPGAGVSRHGKRKAEHERNASASKKAMEAYYGHAGHA----GVAAGGGRSSGGDNSGEEATDDESEFSSVDGRTSPSQQPGAWGVAPPPQPGMGVHFSPEAHDFAAAAAAAGFN 111
BLAST of mRNA_P-lacustris_contig1014.231.1 vs. uniprot
Match:
A0A6H5L4I8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I8_9PHAE)
HSP 1 Score: 110 bits (274), Expect = 9.730e-24
Identity = 66/87 (75.86%), Postives = 70/87 (80.46%), Query Frame = 1
Query: 535 MVPGAGVVRHGKRKAEHERHTSSSKKAMEVYCGEAGAMTSRGGLRGGGGRS--GDNSGEEATDDESEFSSVDGRTSPSQ-PGAWGAA 786
MVPGAGVVRHGKRKAEHER+ S+SKK ME Y G AG G+ GGGRS GDNSGEEATDDESEFSSVDGRTSP+Q PG WGAA
Sbjct: 1 MVPGAGVVRHGKRKAEHERNASASKKVMEAYYGHAGHA----GVVAGGGRSSGGDNSGEEATDDESEFSSVDGRTSPAQQPGTWGAA 83
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1014.231.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.76e-27 / Id = 67.83 Expect = 9.73e-24 / Id = 75.86 Sequence D7G7Z4_ECTSI A0A6H5L4I8_9PHAE
Match Name E-value Identity Description
D7G7Z4_ECTSI 1.760e-27 67.83 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] A0A6H5L4I8_9PHAE 9.730e-24 75.86 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Ec32 ortholog description expressed unknown protein Ec32 ortholog Ec-06_009550.1 Exons 2 Model size 1673 Cds size 495 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815285.1470134-UTR-P-lacustris_contig1014:56086..56730 1622815285.1470134-UTR-P-lacustris_contig1014:56086..56730 Pleurocladia lacustris SAG_25_93 UTR P-lacustris_contig1014 56087..56730 - 1693493450.9535317-UTR-P-lacustris_contig1014:56086..56730 1693493450.9535317-UTR-P-lacustris_contig1014:56086..56730 Pleurocladia lacustris SAG_25_93 UTR P-lacustris_contig1014 56087..56730 - 1622815285.17982-UTR-P-lacustris_contig1014:57286..57820 1622815285.17982-UTR-P-lacustris_contig1014:57286..57820 Pleurocladia lacustris SAG_25_93 UTR P-lacustris_contig1014 57287..57820 - 1693493450.9814415-UTR-P-lacustris_contig1014:57286..57820 1693493450.9814415-UTR-P-lacustris_contig1014:57286..57820 Pleurocladia lacustris SAG_25_93 UTR P-lacustris_contig1014 57287..57820 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815285.156569-CDS-P-lacustris_contig1014:56730..56800 1622815285.156569-CDS-P-lacustris_contig1014:56730..56800 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1014 56731..56800 - 1693493450.9627542-CDS-P-lacustris_contig1014:56730..56800 1693493450.9627542-CDS-P-lacustris_contig1014:56730..56800 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1014 56731..56800 - 1622815285.166798-CDS-P-lacustris_contig1014:56861..57286 1622815285.166798-CDS-P-lacustris_contig1014:56861..57286 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1014 56862..57286 - 1693493450.970583-CDS-P-lacustris_contig1014:56861..57286 1693493450.970583-CDS-P-lacustris_contig1014:56861..57286 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1014 56862..57286 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1014.231.1
>prot_P-lacustris_contig1014.231.1 ID=prot_P-lacustris_contig1014.231.1|Name=mRNA_P-lacustris_contig1014.231.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=165bp
MVPGAGVVRHGKRKAEHERHTSSSKKAMEVYCGEAGAMTSRGGLRGGGGR back to top mRNA from alignment at P-lacustris_contig1014:56087..57820-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1014.231.1 ID=mRNA_P-lacustris_contig1014.231.1|Name=mRNA_P-lacustris_contig1014.231.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1734bp|location=Sequence derived from alignment at P-lacustris_contig1014:56087..57820- (Pleurocladia lacustris SAG_25_93)TGGTGAAATTTTGCTGTTCTGATTTCCCCCACTTTCCCCCCAACGGCAAG
CAGAAAAGAAGACGGCGCCTGTGGGCTCCTTGTGTCTATCCCACTGCTGC
ACGCCACAGTTCGCTCTGCAGCACGCCACGCCGTAGTCTCTTCCTCTTGC
CCGCTCTTGCGTGCCCTCCGTTTCTCGGGGAGTGCGCGAAGCGGTTGGTT
ACGGGGTATTAGACACAACACATAATCTCGCGTTCGCCAGTGTACACCGG
TCGAAGCTCATTTTTGATGGTCACGAAAGAGATCTACATGCAGAACATAC
AAGCTGCTGTGGTCAAGCTCCTCAGCGATTGACATCGTTGTCGTCGTAGC
ACTTTGCAGCGAGCCACGGAAGCATCACGTCTCACCCGCTTCATCTATTG
CTGTCGCACCCCGTTCCCTCGGCTGATGCGTGTGGGTTTTGTTCTATCAG
CCTGCATTCACGACCACCCTACAGACCGTTCTCGGAGAGTATATACTGGA
GAGAATAGGACCAGCAGACCATCAACACTATCAT ATGGTGCCCGGGGCTG
GTGTGGTGCGCCATGGAAAGCGTAAAGCGGAGCACGAGCGACACACCTCC
TCCTCCAAGAAGGCCATGGAGGTCTACTGCGGCGAGGCGGGCGCGATGAC
AAGCCGCGGCGGCCTCCGCGGCGGCGGCGGGCGCTCTGGGGACAACAGCG
GGGAAGAGGCAACGGACGACGAGAGCGAGTTTTCCTCGGTGGACGGCCGA
ACATCCCCCTCGCAACCCGGTGCCTGGGGAGCAGCTACAGCAGGAGAAGG
GGCGAGAGGGCACTTCAATCCGGCTGGACCTCACGGCTTCGCAGTTGCAG
CAGCAGCAGGCTTGAACCTGGGCATGGAGGATTCGAGCGCAGCTGGATTC
ACGGGAGCCAGCAGTTGCTGGTCTGCTTTCGGCGGCAACGGCGCCGGCCC
ACAGCAGCA GCAGCAGCTGCTGCTGGAGCAACAGTATTGCCAGCAGCAAC
AACTGGTGTACCAGCAGCAGCTGCAGCAGCAGCAGCTACAACAGCAGCAA
GGAGACGGGAGGAGGATGGTCCGTGGTGGAGCGCGTCTAG AAGGAGACGA
ATGGGGCTGGTTTGTCGATGCGGGAGAGCAGGAGCAGCAAGGACATCCAG
GGCAGTGGGGGTAAGGCGATCAGCCCAACATTGACACAAGGAGACCGAGC
AGGGATTAGAAAACGAGATCTCCTTACGTATGATGAAGGCTTGGTTTTTT
TTCGTGAAGAGAATTTTATTCCTAGCCTCCGGCGGGACGTAGGGGATAAT
TTGTGCTCTGGTGTGTGTTTTGCCCCGCGTTTGTAATGCTGAACACGCCT
CTTCGTTCAAATGTTTTTTTTTAGAAGTCTCTTCTTTCCCCTCCCCTGGC
GGGGGTGTTTATTGATTTTCCGTAAGCGATCTTTGCGGTCCATTTCTGTG
TTGTTTCCCCCTCAAGACGATATACAAATATACTCGAATTGTCCATTTTT
CCGTGCAGTAGAAAAAAATGGTGAAGGGTTGTGGTTCTGCATCGTTAGCC
CGCCCCTTCCCAGTGTCGGCTTGCAGTTCCCTTCAACTTCAAGTCCTTTT
CCATTCTAGTGTATGCACGTAAACCTTTACGTTTGTCCTGGAACTCCGCC
CATAGGTTCGACCACGACGTGTCCGCCGCCGCGGCAGTTTCATTTTTTCC
GGTAAATTTCCCTGTTGCGTTACACTAGTATCTC back to top Coding sequence (CDS) from alignment at P-lacustris_contig1014:56087..57820-
>mRNA_P-lacustris_contig1014.231.1 ID=mRNA_P-lacustris_contig1014.231.1|Name=mRNA_P-lacustris_contig1014.231.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=990bp|location=Sequence derived from alignment at P-lacustris_contig1014:56087..57820- (Pleurocladia lacustris SAG_25_93) back to top