Homology
BLAST of mRNA_P-lacustris_contig1014.225.1 vs. uniprot
Match:
D7G7Y9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Y9_ECTSI)
HSP 1 Score: 152 bits (383), Expect = 4.890e-39
Identity = 133/310 (42.90%), Postives = 152/310 (49.03%), Query Frame = 1
Query: 34 MLTIVKGAEEVARARANRKYRSSKKKSV-------------NTDRSLPGHLGVAVSRAQN--------------------AGDTPGSTSSEPSDATSNFGAA--DLTSDNPS-------------------LPLESASNAAPGGQSLGSWLMPTSSPTAATKVNKRRRQRPSQGTESSDVPRDRSSGTSTWASLS-------------RGQDGQSGGTLSAWLEPRQPDPSRKKLSERGGIVDASVGEQGPTGGSSDHEYDDDDGSGAWMSDRLEGLDPRGAARAKDSWTDRERRNLTYTDIALGAKRKG 762
MLTIV+GAE+VARAR N R LPG +GVAV R N D PG TS+EP+ N A DLTS+ P L +A++ Q LGSWL P +SP A K RRRQRPSQG + D P R + + W S RG G + GTLSAWLEPRQP +R K + G SV E+ P GG S E +DG G WMSDRLEGLDP GAARAKDSW+DRERRNLT TDIALGAKRKG
Sbjct: 1 MLTIVRGAEDVARARXXXXXXXXXXXXXXXXXXXXXAAEHHNVGR-LPGQVGVAVRRGDNKRPRRTFDDVSGDYEYNPLDVHDGPGPTSAEPAAGGGNNEPATVDLTSERPEPVGGDTMSNTFAAFANPGPLRRSNAADQVCAQQLLGSWLQPVASPKKAAK---RRRQRPSQG--AFDEPDVRRNSATAWGGASSPGRDSRGDGCGTRGNGGGNDGTLSAWLEPRQP-ATRGKRTAHG----TSVAEREPDGGFSGDEGGGEDGGGRWMSDRLEGLDPTGAARAKDSWSDRERRNLTCTDIALGAKRKG 299
BLAST of mRNA_P-lacustris_contig1014.225.1 vs. uniprot
Match:
A0A6H5KWK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWK6_9PHAE)
HSP 1 Score: 140 bits (353), Expect = 1.130e-34
Identity = 127/307 (41.37%), Postives = 146/307 (47.56%), Query Frame = 1
Query: 34 MLTIVKGAEEVARARANRKYRSSKKKSV------------NTDRSLPGHLGVAVSRAQN--------------------AGDTPGSTSSEPSDATSNFGAA-DLTSDNP--------SLPLESASNAAP----------GGQSLGSWLMPTSSPTAATKVNKRRRQRPSQGTESSDVPRDRSSGTSTWASLS-------------RGQDGQSGGTLSAWLEPRQPDPSRKKLSERGGIVDASVGEQGPTGGSSDHEYDDDDGSGAWMSDRLEGLDPRGAARAKDSWTDRERRNLTYTDIALGAKRKG 762
MLTIV+GA EVARAR N +R L G +GVAV R N D PG TS+EP+ A DL S+ P S E+ +N P G Q LGSWL P +SP A K RRRQRPSQG + D P R + + W S R G + GTLS WLEP QP S K+ + SV E+G GG S + + GS WMSDRLEGLDP GAARAKDSW+DRERRNLT TDIALGAKRKG
Sbjct: 1 MLTIVRGAAEVARARXXXXXXXXXXXXXXXXXXXXXAEHHNVER-LRGQVGVAVRRGDNRRLRRTFDDVSGDYDYNPLDVPDAPGLTSTEPAGRGDKEPATVDLASERPEPVGGDTTSNAFEAFANPGPLRPSNAADQVGAQFLGSWLQPVASPKKAAK---RRRQRPSQG--AFDEPDVRRNSATAWVGASSPGRDDRGDGCSTRSNGGGNDGTLSGWLEPHQPATSGKQT-----VRGTSVAERGSDGGFSGDKGGGEYGSSKWMSDRLEGLDPSGAARAKDSWSDRERRNLTCTDIALGAKRKG 296
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1014.225.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 4.89e-39 / Id = 42.90 Expect = 1.13e-34 / Id = 41.37 Sequence D7G7Y9_ECTSI A0A6H5KWK6_9PHAE
Match Name E-value Identity Description
D7G7Y9_ECTSI 4.890e-39 42.90 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] A0A6H5KWK6_9PHAE 1.130e-34 41.37 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Ec32 ortholog description hypothetical protein Ec32 ortholog Ec-06_009500.1 Exons 3 Model size 1200 Cds size 885 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815284.2587144-UTR-P-lacustris_contig1014:7353..7386 1622815284.2587144-UTR-P-lacustris_contig1014:7353..7386 Pleurocladia lacustris SAG_25_93 UTR P-lacustris_contig1014 7354..7386 + 1693493450.2934875-UTR-P-lacustris_contig1014:7353..7386 1693493450.2934875-UTR-P-lacustris_contig1014:7353..7386 Pleurocladia lacustris SAG_25_93 UTR P-lacustris_contig1014 7354..7386 + 1622815284.298429-UTR-P-lacustris_contig1014:9589..9871 1622815284.298429-UTR-P-lacustris_contig1014:9589..9871 Pleurocladia lacustris SAG_25_93 UTR P-lacustris_contig1014 9590..9871 + 1693493450.330529-UTR-P-lacustris_contig1014:9589..9871 1693493450.330529-UTR-P-lacustris_contig1014:9589..9871 Pleurocladia lacustris SAG_25_93 UTR P-lacustris_contig1014 9590..9871 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815284.2681804-CDS-P-lacustris_contig1014:7386..7519 1622815284.2681804-CDS-P-lacustris_contig1014:7386..7519 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1014 7387..7519 + 1693493450.305331-CDS-P-lacustris_contig1014:7386..7519 1693493450.305331-CDS-P-lacustris_contig1014:7386..7519 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1014 7387..7519 + 1622815284.2779522-CDS-P-lacustris_contig1014:8514..9031 1622815284.2779522-CDS-P-lacustris_contig1014:8514..9031 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1014 8515..9031 + 1693493450.3152523-CDS-P-lacustris_contig1014:8514..9031 1693493450.3152523-CDS-P-lacustris_contig1014:8514..9031 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1014 8515..9031 + 1622815284.2869525-CDS-P-lacustris_contig1014:9354..9589 1622815284.2869525-CDS-P-lacustris_contig1014:9354..9589 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1014 9355..9589 + 1693493450.323128-CDS-P-lacustris_contig1014:9354..9589 1693493450.323128-CDS-P-lacustris_contig1014:9354..9589 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1014 9355..9589 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1014.225.1
>prot_P-lacustris_contig1014.225.1 ID=prot_P-lacustris_contig1014.225.1|Name=mRNA_P-lacustris_contig1014.225.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=295bp
MLTIVKGAEEVARARANRKYRSSKKKSVNTDRSLPGHLGVAVSRAQNAGD back to top mRNA from alignment at P-lacustris_contig1014:7354..9871+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1014.225.1 ID=mRNA_P-lacustris_contig1014.225.1|Name=mRNA_P-lacustris_contig1014.225.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2518bp|location=Sequence derived from alignment at P-lacustris_contig1014:7354..9871+ (Pleurocladia lacustris SAG_25_93)GTTTCTGCAGTGAAGTACAACGAGATTGGAGAT ATGCTGACAATCGTGAA
AGGTGCCGAAGAAGTGGCGAGAGCTCGAGCGAATCGGAAATATCGAAGCA
GCAAGAAAAAATCGGTGAACACGGACCGTTCTCTCCCAGGACATCTCGGA
GTTGCTGTTTCGAGAG GTGTGAGGAAAAAGGCAACGCCTGCCACGGCAGT
GCACGTGTTGCGACATGTCGAGGCATACACCGAACAACAACATCCACGCT
CGCCGCGGGTTTGCCCATATACTCGCGAGCTGGTGAACCAGGTCGAGCCG
CAGCTCACGTCCCCAATTCAGATGAACGTTAAACAAACATATTTGAAGAT
TTGAATTTCAAACAGCCCCTTTTTTCTCTTCTGTTGCTGAATCTACTACT
ACTGTACCTTGTCGATCGGAAAGCTAGAAGTACGACACCCACAACATATA
TATTTCGTGACTGATGTGGGCGGGCGTCAGCTACGGTTCGGTGTGAGGCC
GCACAGGAGTTTCGCCCTTTTGTTTTGTCAACATCTTTTTTGCGCGGTTC
GTGCCCGATCGCCCAGTACAATAGGACGGTTCAGTCGTCACTTACTTCCC
CATTCGTCGGCGATTAAGTCGATTTTTGTATACCCACGACCGTACAGCAG
TAGTCGCTCTCGACTGGGGGACATGATGCGAGGAAAAAAATCACCGAGAT
TCGATCTCACGTCCAACTACTCTCAGAAGGTTTACTCTCAGAAGGTCACA
AGGCTACCAACTGGACCCCCCCGAATGCGTGCTATTATCGCGGGATAAGC
TGACCTTTGTCCACCACCAACGCGCGCCGTCCTCCAACAGTACAGCGACA
GCAGTGTGTCTCTCTCCTTGCTAAATTTGATCGTGAGGTGCGCATCCCAG
AAAGCGGCGATCAGCTTTCCGTTGCAACAAAAAATTCACGATCCACGCTT
GTACAGTACATGGAGGCAAGTGAACGCTGAAAAAGACGCGGTGCATGAAT
CGGGGGAATGAATTGCAAACTTCTGTCAATTCCTTCTCAATTTCTGCTCA
AGTCCTCTTCATTTCCTTCTCAATTTCCTCTCGCGTTGGACTGACAACCT
TTGAAGGCATCAGTATACTGCGTGTATATTCCCTCTTTCCTCGCATGACC
CCCGTCCTCAGCCCAGAACGCAGGAGACACCCCAGGATCAACCAGCTCCG
AACCCTCGGACGCCACCTCGAATTTCGGCGCGGCAGACCTCACGTCGGAC
AACCCCAGCCTACCCCTAGAAAGCGCCTCCAACGCTGCCCCTGGTGGGCA
GTCTTTGGGTTCGTGGCTCATGCCAACGTCTTCCCCGACGGCAGCGACCA
AGGTCAACAAGAGACGGAGGCAGCGGCCGTCGCAAGGCACAGAGAGCTCT
GACGTTCCGCGCGACCGCAGTAGCGGCACGAGCACGTGGGCGTCGCTTTC
CCGGGGGCAGGATGGGCAGAGCGGTGGCACGTTGTCCGCATGGCTCGAGC
CACGGCAGCCGGACCCCAGTCGCAAGAAACTGTCCGAGCGAGGCGGGATT
GTAGATGCCTCCGTAGGGGAGCAAGGGCCCACGGGTGGATCCTCTGATCA
TGAATACGATGATGATGATGGCAGCGGCGCGTGGATGTCGGATAGGCTCG
AGGGCCTCGATCCCAGGGGGGCAGCTAG GTGAGCATGCGCCACCTGTGGT
TGGTGCCGCTTCAGGAGTCGAAGACGCGCCAGCGTTTGAGCAGTCCTCGT
GTTTGGGCGTGAGTGCCGGTGGCCTACTGAAGTTTAGCCTTGTTCCCGCC
CCAGCAAACACACACTGGCGCACGTGTTGCTGCTGTATGCCAATAATCAA
CCTAACGCCTTTGGTGTTGTTGCTCAGCCCAGGAAGCCGTCTGTCGCGAT
TAAACCCCAAGGGCCAGCCACAAGTCGTGTCGTTGGTCGTATCGTGAATC
TTGCACCTTTTCGCACCCGTGATTTTGGTAATCGGTGCCTGACACCTCCA
GAGCCAAGGACAGCTGGACGGACAGGGAGAGGCGAAATTTGACGTACACA
GACATCGCCTTAGGAGCCAAACGCAAAGGGAGAGGCCGCGTTGGTGTCAG
GGGCTGGAAAACCAAGTCCGCCGGAAAAAAAGCTTTCATGGCAGCTGGGC
GGGGCGGTGGGGCGGCCTTCGTCAAGATGTCCAAGAGTGATGGTGGCGGC
GGCGGTGGTGGTGGTAGAAAAAAGCGAAAAGGCTGA CTGGTGGCTATTAA
TTGGGTGTGCCGTGTGTCACGCCTGGTGACACGTAGTGTGTTGCCGCCAT
TGCGGTAGCGCAGCTAGTGTCGGAATGGTTCTTTCAGCCATACTGAAGCT
CGATACGGTTGGCTCTCCTCACCTGGCATGCGGAGCTGCCTCGTTATGGA
TAAGTTCAGCCACAAGCTGTGGTCTTGTTGGGCCTCTTCTCTCTTTTGCG
TCGGCACTGCTACTGCTGTGTTCTGTAAGTGCCGTTTCAACTTGTTTGGT
ACGTTCATCAGTCATGCT back to top Coding sequence (CDS) from alignment at P-lacustris_contig1014:7354..9871+
>mRNA_P-lacustris_contig1014.225.1 ID=mRNA_P-lacustris_contig1014.225.1|Name=mRNA_P-lacustris_contig1014.225.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1770bp|location=Sequence derived from alignment at P-lacustris_contig1014:7354..9871+ (Pleurocladia lacustris SAG_25_93) back to top