mRNA_P-lacustris_contig1012.221.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1012.221.1
Unique NamemRNA_P-lacustris_contig1012.221.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig1012.221.1 vs. uniprot
Match: A0A6H5JZ96_9PHAE (4a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ96_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 1.610e-52
Identity = 83/94 (88.30%), Postives = 87/94 (92.55%), Query Frame = 1
Query:    1 LASLPRWTSSPDRDFIVRSFVAKNFVSAMAFLNGVATVAEEQGHHPDLHLTQYRNVEIRLQTHSMGGVTRNDIVEARLLDQVPVTYSPKWLREN 282
            LASLP WTS+P+ DFIVRSFVAKNFVSAMAFLN VATVAEEQGHHPDLHLTQYRNVEIRLQTHSMGGVT+NDI EARL DQ+ VTYSPKW REN
Sbjct:   35 LASLPLWTSTPNGDFIVRSFVAKNFVSAMAFLNEVATVAEEQGHHPDLHLTQYRNVEIRLQTHSMGGVTQNDIAEARLFDQLSVTYSPKWQREN 128          
BLAST of mRNA_P-lacustris_contig1012.221.1 vs. uniprot
Match: D7G856_ECTSI (4a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G856_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 1.130e-51
Identity = 83/94 (88.30%), Postives = 88/94 (93.62%), Query Frame = 1
Query:    1 LASLPRWTSSPDRDFIVRSFVAKNFVSAMAFLNGVATVAEEQGHHPDLHLTQYRNVEIRLQTHSMGGVTRNDIVEARLLDQVPVTYSPKWLREN 282
            LASLP WTS+P+ DFI+RSFVAKNFVSAMAFLN VATVAEEQGHHPDLHLTQYRNVEIRLQTHSMGGVT+NDI EARL DQ+PVTYSPKW REN
Sbjct:  183 LASLPLWTSTPNGDFIIRSFVAKNFVSAMAFLNEVATVAEEQGHHPDLHLTQYRNVEIRLQTHSMGGVTQNDIAEARLFDQLPVTYSPKWQREN 276          
BLAST of mRNA_P-lacustris_contig1012.221.1 vs. uniprot
Match: K8Z8Y7_NANGC (4a-hydroxytetrahydrobiopterin dehydratase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8Z8Y7_NANGC)

HSP 1 Score: 125 bits (313), Expect = 2.240e-34
Identity = 56/97 (57.73%), Postives = 73/97 (75.26%), Query Frame = 1
Query:    1 LASLPRWTSSPDRDFIVRSFVAKNFVSAMAFLNGVATVAEEQGHHPDLHLTQYRNVEIRLQTHSMGGVTRNDIVEARLLDQVPVTYSPKWLRENPEA 291
            L SLP W  S D   + RSF AKNF +A+AF++ V  VAE +GHHPDLHLT YR VE+ L TH++GG+T ND++ A L+D +P +YSPKWL+E+PEA
Sbjct:   76 LPSLPLWRLSKDHKRLSRSFTAKNFAAALAFIDAVGAVAECEGHHPDLHLTSYREVEVVLYTHAVGGLTENDLIMAALIDTIPASYSPKWLKEHPEA 172          
BLAST of mRNA_P-lacustris_contig1012.221.1 vs. uniprot
Match: A0A6U0TCE5_9STRA (4a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0TCE5_9STRA)

HSP 1 Score: 116 bits (290), Expect = 8.900e-31
Identity = 53/93 (56.99%), Postives = 69/93 (74.19%), Query Frame = 1
Query:   13 PRWTSSPDRDFIVRSFVAKNFVSAMAFLNGVATVAEEQGHHPDLHLTQYRNVEIRLQTHSMGGVTRNDIVEARLLDQVPVTYSPKWLRENPEA 291
            P W S  +   + RSFVAKNF +A+ F+N V  +AE +GHHPDLH+T YR V +++ THS+ G+T ND V A L+D +PVTYSPKWLRE+PEA
Sbjct:   92 PLW-SVTEEGRLERSFVAKNFQAALDFVNAVGVIAEREGHHPDLHITSYRTVTVQMYTHSLNGLTENDFVMASLIDALPVTYSPKWLREHPEA 183          
BLAST of mRNA_P-lacustris_contig1012.221.1 vs. uniprot
Match: A0A812N154_SYMPI (4a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812N154_SYMPI)

HSP 1 Score: 115 bits (289), Expect = 2.810e-30
Identity = 52/94 (55.32%), Postives = 71/94 (75.53%), Query Frame = 1
Query:    1 LASLPRWTSSPDRDFIVRSFVAKNFVSAMAFLNGVATVAEEQGHHPDLHLTQYRNVEIRLQTHSMGGVTRNDIVEARLLDQVPVTYSPKWLREN 282
            ++SLP WT SPD   I R FVAKN+ +AM FLN V+T+AE +GHHPD+H+T YRNV + L TH++GG++  D V A  +D++ V YSPKWL+E+
Sbjct:  122 ISSLPNWTLSPDGASISRCFVAKNWAAAMNFLNEVSTLAESEGHHPDVHITSYRNVRVDLSTHAIGGLSLPDFVLAAKVDEIKVEYSPKWLKEH 215          
BLAST of mRNA_P-lacustris_contig1012.221.1 vs. uniprot
Match: A0A812W6D9_9DINO (4a-hydroxytetrahydrobiopterin dehydratase (Fragment) n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812W6D9_9DINO)

HSP 1 Score: 115 bits (289), Expect = 5.380e-30
Identity = 52/94 (55.32%), Postives = 70/94 (74.47%), Query Frame = 1
Query:   10 LPRWTSSPDRDFIVRSFVAKNFVSAMAFLNGVATVAEEQGHHPDLHLTQYRNVEIRLQTHSMGGVTRNDIVEARLLDQVPVTYSPKWLRENPEA 291
            LP W  SPD   I R FVAKN+ +AM+FLN V+ +AE++GHHPD+H+T YRNV + L TH++GG++  D V A  +DQ+ V YSPKWL+E+P A
Sbjct:  153 LPLWALSPDGASISRCFVAKNWAAAMSFLNEVSVLAEQEGHHPDVHITSYRNVRVELSTHAIGGLSLPDFVLAAKMDQIKVEYSPKWLKEHPVA 246          
BLAST of mRNA_P-lacustris_contig1012.221.1 vs. uniprot
Match: A0A7S0IZA2_9EUKA (4a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IZA2_9EUKA)

HSP 1 Score: 112 bits (281), Expect = 1.930e-29
Identity = 52/94 (55.32%), Postives = 71/94 (75.53%), Query Frame = 1
Query:    1 LASLPRWTSSPDRDFIVRSFVAKNFVSAMAFLNGVATVAEEQGHHPDLHLTQYRNVEIRLQTHSMGGVTRNDIVEARLLDQVPVTYSPKWLREN 282
            LA+LP WT SP+   I R FVA+N+ +AMAF N V+ +AEE+GHHPDLHLT +RNV + L TH++GG++  D+V A  +D + V YSPKWL+E+
Sbjct:   88 LAALPAWTLSPNGTAIRRDFVARNWGAAMAFFNAVSEIAEEEGHHPDLHLTGWRNVGVELSTHAIGGLSLPDLVLAAKIDCIDVDYSPKWLKEH 181          
BLAST of mRNA_P-lacustris_contig1012.221.1 vs. uniprot
Match: A0A6U3RQ02_9STRA (4a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3RQ02_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.270e-29
Identity = 56/98 (57.14%), Postives = 69/98 (70.41%), Query Frame = 1
Query:    1 LASLPRWTSSPDRDFIVRSFVAKNFVSAMAFLNGVATVAEEQGHHPDLHLTQYRNVEIRLQTHSMGGVTRNDIVEARLLDQV-PVTYSPKWLRENPEA 291
            L +LP W  S D   I R FVAKNF +A+ ++N    +AE  GHHPDLH+TQYRNV + L THS+GG+T ND + A  LD V PV YSPKWL+E+PEA
Sbjct:   76 LGNLPLWKLSEDGTKISRGFVAKNFQAALDWINTAGHIAELNGHHPDLHITQYRNVCVTLWTHSVGGLTENDFLLAEQLDTVAPVKYSPKWLKEHPEA 173          
BLAST of mRNA_P-lacustris_contig1012.221.1 vs. uniprot
Match: A0A7S2L402_9STRA (4a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L402_9STRA)

HSP 1 Score: 110 bits (276), Expect = 3.030e-29
Identity = 56/99 (56.57%), Postives = 69/99 (69.70%), Query Frame = 1
Query:    1 LASLPRWTSSPDRDF-IVRSFVAKNFVSAMAFLNGVATVAEEQGHHPDLHLTQYRNVEIRLQTHSMGGVTRNDIVEARLLD-QVPVTYSPKWLRENPEA 291
            L +LP W       F I R F AKNF +A+  +N V  +AE +GHHPDLHLT YR+VEI L TH +GGVT ND   AR++D +V ++YSPKWLRENPEA
Sbjct:   35 LKNLPLWAQQQHGIFKISRKFTAKNFQAALDCINQVGVIAEREGHHPDLHLTSYRDVEIVLFTHKLGGVTLNDFAIARVIDLEVKISYSPKWLRENPEA 133          
BLAST of mRNA_P-lacustris_contig1012.221.1 vs. uniprot
Match: A0A7J7QLT3_9CHLO (4a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QLT3_9CHLO)

HSP 1 Score: 111 bits (278), Expect = 5.060e-29
Identity = 52/94 (55.32%), Postives = 67/94 (71.28%), Query Frame = 1
Query:    1 LASLPRWTSSPDRDFIVRSFVAKNFVSAMAFLNGVATVAEEQGHHPDLHLTQYRNVEIRLQTHSMGGVTRNDIVEARLLDQVPVTYSPKWLREN 282
            LA+LP W  + D+  I R FVAKNF++A+ F N  A VAEE+GHHPDLHLT YR V++ L TH+ GG+T  D V A  LD + + YSPKWL++N
Sbjct:   70 LAALPGWQLAQDQGSISRHFVAKNFMAAVKFFNQAAEVAEEEGHHPDLHLTNYREVQVVLSTHAAGGLTMFDFVMAAKLDALDIEYSPKWLKQN 163          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1012.221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZ96_9PHAE1.610e-5288.304a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=... [more]
D7G856_ECTSI1.130e-5188.304a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=... [more]
K8Z8Y7_NANGC2.240e-3457.734a-hydroxytetrahydrobiopterin dehydratase n=2 Tax=... [more]
A0A6U0TCE5_9STRA8.900e-3156.994a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=... [more]
A0A812N154_SYMPI2.810e-3055.324a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=... [more]
A0A812W6D9_9DINO5.380e-3055.324a-hydroxytetrahydrobiopterin dehydratase (Fragmen... [more]
A0A7S0IZA2_9EUKA1.930e-2955.324a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=... [more]
A0A6U3RQ02_9STRA2.270e-2957.144a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=... [more]
A0A7S2L402_9STRA3.030e-2956.574a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=... [more]
A0A7J7QLT3_9CHLO5.060e-2955.324a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1012contigP-lacustris_contig1012:62226..62835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.9
Seed ortholog evalue1.9e-41
Seed eggNOG ortholog2880.D7G856
KEGG rclassRC01208
KEGG koko:K01724
KEGG ReactionR04734
KEGG Pathwayko00790,map00790
Hectar predicted targeting categoryother localisation
EggNOG free text desc.4-alpha-hydroxytetrahydrobiopterin dehydratase activity
EggNOG OGsCOG2154@1,KOG4073@2759
EC4.2.1.96
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04147
Exons2
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815283.2799034-CDS-P-lacustris_contig1012:62225..623171622815283.2799034-CDS-P-lacustris_contig1012:62225..62317Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1012 62226..62317 -
1693493449.7453115-CDS-P-lacustris_contig1012:62225..623171693493449.7453115-CDS-P-lacustris_contig1012:62225..62317Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1012 62226..62317 -
1622815283.2918422-CDS-P-lacustris_contig1012:62636..628351622815283.2918422-CDS-P-lacustris_contig1012:62636..62835Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1012 62637..62835 -
1693493449.7577837-CDS-P-lacustris_contig1012:62636..628351693493449.7577837-CDS-P-lacustris_contig1012:62636..62835Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1012 62637..62835 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1012.221.1prot_P-lacustris_contig1012.221.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1012 62226..62835 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1012.221.1

>prot_P-lacustris_contig1012.221.1 ID=prot_P-lacustris_contig1012.221.1|Name=mRNA_P-lacustris_contig1012.221.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=97bp
LASLPRWTSSPDRDFIVRSFVAKNFVSAMAFLNGVATVAEEQGHHPDLHL
TQYRNVEIRLQTHSMGGVTRNDIVEARLLDQVPVTYSPKWLRENPEA
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mRNA from alignment at P-lacustris_contig1012:62226..62835-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1012.221.1 ID=mRNA_P-lacustris_contig1012.221.1|Name=mRNA_P-lacustris_contig1012.221.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=610bp|location=Sequence derived from alignment at P-lacustris_contig1012:62226..62835- (Pleurocladia lacustris SAG_25_93)
CTGGCATCGTTACCGCGGTGGACGTCGTCCCCTGACCGAGACTTTATCGT CCGCTCCTTCGTCGCCAAGAACTTCGTGTCGGCCATGGCGTTTCTCAACG GAGTGGCGACCGTGGCGGAAGAGCAAGGGCATCACCCAGACCTTCACCTT ACACAGTACCGTAACGTCGAGATACGCCTGCAAACACATTCGATGGGAGG TGAGGAAGTCTCTGCTGCATGACTGCGGGCGTGGCGGCGGCGAACGTGAG CTGCGCCCTTTGTTTGCTTCCGAAAGGAAGAGTGCGTTGCCTTCACCAAA GGGTTTCCAATGTGTGCACACTCCAAACACGGAGGGATTCACCGGCCTTG AGACACTAACTGCAGGATTTGGTGGCTCTCTCTTGCACTAACGTCGCTCG AATCATCCTCAACCAGCCATGTGCTACTTGTAGCCACCCATTTGTTTCCT GGTCGGAGTCTCATCAATCTATCCATGCCAAACTATGCGCTCCTCGATGT GATTCTTCGTCATTAAAGGTGTGACCCGGAATGACATCGTGGAGGCCAGA CTGCTCGACCAGGTGCCAGTGACCTACTCGCCCAAGTGGCTACGAGAAAA CCCTGAGGCG
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Coding sequence (CDS) from alignment at P-lacustris_contig1012:62226..62835-

>mRNA_P-lacustris_contig1012.221.1 ID=mRNA_P-lacustris_contig1012.221.1|Name=mRNA_P-lacustris_contig1012.221.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=582bp|location=Sequence derived from alignment at P-lacustris_contig1012:62226..62835- (Pleurocladia lacustris SAG_25_93)
CTGGCATCGTTACCGCGGTGGACGTCGTCCCCTGACCGAGACTTTATCGT
CCGCTCCTTCGTCGCCAAGAACTTCGTGTCGGCCATGGCGTTTCTCAACG
GAGTGGCGACCGTGGCGGAAGAGCAAGGGCATCACCCAGACCTTCACCTT
ACACAGTACCGTAACGTCGAGATACGCCTGCAAACACATTCGATGGGAGC
TGGCATCGTTACCGCGGTGGACGTCGTCCCCTGACCGAGACTTTATCGTC
CGCTCCTTCGTCGCCAAGAACTTCGTGTCGGCCATGGCGTTTCTCAACGG
AGTGGCGACCGTGGCGGAAGAGCAAGGGCATCACCCAGACCTTCACCTTA
CACAGTACCGTAACGTCGAGATACGCCTGCAAACACATTCGATGGGAGGT
GTGACCCGGAATGACATCGTGGAGGCCAGACTGCTCGACCAGGTGCCAGT
GACCTACTCGCCCAAGTGGCTACGAGAAAACCCTGAGGCGGTGTGACCCG
GAATGACATCGTGGAGGCCAGACTGCTCGACCAGGTGCCAGTGACCTACT
CGCCCAAGTGGCTACGAGAAAACCCTGAGGCG
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