mRNA_P-lacustris_contig1011.214.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1011.214.1
Unique NamemRNA_P-lacustris_contig1011.214.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig1011.214.1 vs. uniprot
Match: D7FLU8_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLU8_ECTSI)

HSP 1 Score: 511 bits (1315), Expect = 5.850e-163
Identity = 306/615 (49.76%), Postives = 388/615 (63.09%), Query Frame = 1
Query:    1 RFPPTRKTTAEGDDGEDPGLSQSSSISTQIVSPEQKVMVDESALTTEQREVVNTRMEVGDILKVVAYAGTGKTHTLRAFAQTHPDLKILYLVFTRSVANEAEEKFPRDNSTCLSFSQLAWQKMDLPTGQKLTHNLKTAIHAILKRLDRTTPYTHAIIVANAIGAFCRSMDTEINAGHVRIPWRVSPSPSRSGHAKAPKPPPPVQWVLETARAIWVRMRIPRSSENERCVSARERIHPTHDSIMKEYQLSKPDLSVNWDAIYSWRGARDYLKSAKSNKTLYLTQVFRFGNSIASVANSVLLRLIGVRRPLLGSLALSNGPAKVIFERERHEWLQLDGESQGRYV----TNQLLLREAIAAMARGDRVAFQDKKTVLVQDARDLCHLIAGKKGRVRSKELREIGSISALRAMLEEAEDDH-LKTWIPLLNMVDDFMANGKTPEEILSDLDRVSECAVDKSSTGPLMILTTAHSAKGLDWDTVVLGDDFDFHPLDGNTRLQLNNNEKEAANLLYVAVTRAKRRLFLNPTLANQLRAYGMWDSLSLQGTTASDPLH-PVPCCSYGCDCSDAHGVMATAADPVGVNDGDISRRHGCRFYYVGSGS----GAALCRECVEG 1815
            RF   + TTAE +D     LSQSS++S+Q         VDES LT+EQREVV+T ++VG  L +VAYAGTGKT TLRA AQ +P LKILY  F RSVA  A   F   N+ C + S ++         +  T  +  AI A +      T Y+HA +V N+I AFC S D +I + H+++P  +S SPS+S         P   WVL TA+ +W  M    ++ +     +R  I  T  S MK YQLS+PDLS    AIY +RGARDYLK  KS KTLYLTQVFRF N IASVAN+VLL L   RRPLLGSLA  +GP KV+FERERHEWLQ D ES+GR+     TN  L+ EA+AA+ RGDR AF D +   +Q+ +DLCH++ G+ G V++ +L+EIGSI ALR +L++  DD+ +KT  PLL MVDD+++ GKTP  +L+D+  V    +   S GPLMILTT H  KGL++DTVVL DDF F  +DG++ L+   +  E+ANLLYVAVTRAKR+L LN  LA+QLR++GMWDSL+LQGTTA  P   PVPCC+ GCDC+DAHGV   A DP  VN                       G  LCR C EG
Sbjct:  105 RFTSAQDTTAEDNDPST-WLSQSSNLSSQRTFCPDPRWVDESMLTSEQREVVDTEVDVGQTLTIVAYAGTGKTFTLRAVAQRNPTLKILYAAFNRSVAAAASSIFS-SNTDCKTMSSVSLTGGTFGRVEGSTAKVTKAIQAFV---GGNTRYSHAKVVLNSIDAFCASSDPDITSEHLKMPPLLSHSPSQSQSRTRRVERPSKGWVLATAKKVWGEMHPSPAAASSSTRGSR--IPRTFSSCMKAYQLSEPDLSGR-HAIYGFRGARDYLKKVKSFKTLYLTQVFRFPNPIASVANTVLLGLKRERRPLLGSLAFPDGPTKVVFERERHEWLQQDCESKGRFAYIARTNAGLMTEAVAAIGRGDRAAFMDGRAPNLQEVKDLCHMMMGEIGEVKNLDLKEIGSIPALREVLDKGTDDNDIKTIAPLLGMVDDYISAGKTPHRVLADMGAVESMRLGPDSKGPLMILTTVHKVKGLEYDTVVLADDFSFELVDGSSPLR--KSATESANLLYVAVTRAKRQLILNKKLAHQLRSFGMWDSLALQGTTALCPAAGPVPCCTDGCDCADAHGVAPAADDPASVNGXXXXXXXXXXXXXXXXXXXXXXGGPLCRACAEG 709          
BLAST of mRNA_P-lacustris_contig1011.214.1 vs. uniprot
Match: D7G6K8_ECTSI (DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6K8_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 7.390e-43
Identity = 192/650 (29.54%), Postives = 274/650 (42.15%), Query Frame = 1
Query:  124 SALTTEQREVVNTRMEVGDILKVVAYAGTGKTHTLRAFAQTHPDLKILYLVFTRSVANEAEEKFPRDNSTCLSFSQLAWQKMDLPTGQKLTHNLKTA-IHAILKRLDRTTPYTHAIIVANAIGAFCRSMDTEINAGHVRIPWRVSPSPSRSGHAKAPKPPPPVQWVLETARAIWVRMRIPRSSENE------RCVSARERIHPTHDSIMKEYQLSKPDLSVNWD----------------------------------AIYSWRGARDYLKSAKSNKTLYLTQVFRFGNSIASVANSVLLRLIGVRRPLLG------SLALSNGPAKVIFERERHEWLQLDGESQGRYVTNQLLLREAIAAMARGDRVAFQDKKTVLVQDA-RDLCHLIAGKKGRVRSKELREIGSISALRAMLEEAEDDHLKTWIPLLNMVDDFMANGKTPEEILSDLDRVSECAVDKSSTGPLMILTTAHSAKGLDWDTVVLGDDF----DFHPLDGNTRLQL--NNNEKEAANLLYVAVTRAKRRLFLNPTLANQLRAYGMWDSLSLQG----------TTASDPLHPVPCCSYGCDCSDAHG------------VMATAADPVGVNDGDIS----------RRHGCRFYYVGSGSGAALCRECVEG 1815
            S LT EQR +V   ++ G +L V+A+AGTGKT  LRA+AQ  P LKILYL F  SV  EAE+ FP  +  C    QLA++ +      KL  +L+ + + A L   DR             +G    +                +PSP                 VLE A   W  M+                      +  TH   +K +QLS+P L   +D                                  AIY + GA D+LK  +  K  +LTQVFRF  SIA VANS++  L    RPLLG       + LS G    +++ ++   ++       R V+   L+  A+ A +RG++VA+         +A  D+C +  G+   V+   L+++ +I  L   ++E+ D   + W   L M+D     GK P+ +LS+L  +    V       L  L+T H AKGL++DTVVL DDF    D     G     +  +  EKE  N+LYVAVTRAKRRL +N +L   L   G W+S+SL+G          +++S P+      S  C+    H               A AAD   +     +          R  G    Y  SGS   LC   VEG
Sbjct:  681 SNLTAEQRSIVLADVKPGGVLTVLAFAGTGKTTCLRAYAQARPHLKILYLTFNVSVREEAEKTFP-PHVACKGVHQLAFRFVGRRFQSKLKPDLRESDVQAFLN--DR-------------LGKDGGASTQPPXXXXXXXXXXXAPSPVEDAT------------VLEWAAMAWTEMQSTGPPGGAGWXXXXXXXXXXASLGMTHAGYLKLFQLSRPCLGRTYDVIMLDEAQDSNPCIASIVLRETRCARILVGDSHQAIYGFIGAEDHLKRVEGGKIQHLTQVFRFDQSIAHVANSLVGPLKRETRPLLGCAGKQGKVVLSGGTGLEVWQ-DQERTVKRPIAFLARTVST--LVHAAMWARSRGEKVAWVGGAQAYSLEAIEDMCLMAMGRSSEVKHALLKKLKTIKKLVRFIQESGD---RQWANRLRMLD-----GKDPQALLSELREIQRKQVHPREADTL--LSTVHKAKGLEFDTVVLADDFIEVDDIRWTTGPCPQPVWDSEAEKEEVNILYVAVTRAKRRLVVNSSLRAFLLVTGAWNSVSLRGVAGRRTPGDGSSSSSPMDEARSSSSHCNLCGRHADAGGGGNRVDLLSRAQAADAQQLATSGRAFANTLITANQRAGGGGLLYAESGSLRPLCXXXVEG 1289          
BLAST of mRNA_P-lacustris_contig1011.214.1 vs. uniprot
Match: UPI0010FF6622 (UvrD-helicase domain-containing protein n=1 Tax=Pseudomonas stutzeri TaxID=316 RepID=UPI0010FF6622)

HSP 1 Score: 157 bits (396), Expect = 5.240e-37
Identity = 150/512 (29.30%), Postives = 226/512 (44.14%), Query Frame = 1
Query:  133 TTEQREVVNTRMEVGDILKVVAYAGTGKTHTLRAFAQTHPDLKILYLVFTRSVANEAEEKFPRDNSTCLSFSQLAWQKMDLPTGQKLTHNLKTAIHAILKRLDRTTPYTHAIIVANAIGAFCRSMDTEINAGHVRIPWRVSPSPSRSGHAKAPKPPPPVQWVLETARAIWVRMRIPRSSENERCVSARERIHPTHDSIMKEYQLSKPDLSVN-------------------------------WDAIYSWRGARDYLKSA--KSNKTLYLTQVFRFGNSIASVANSVLLRLIGVRRPLLGSLALSNGPAKVIFERERHEWLQLDGESQ--GRYVTNQLLLREAIAAMARGDRVAFQDK-KTVLVQDARDLCHLIAGKKGRVRSKELREIGSISALRAMLEEAEDDHLKTWIPLLNMVDDFMANGKTPEEILSDLDRVSECAVDKSSTGPLMILTTAHSAKGLDWDTVVLGDDF-DFHPLDGNTRLQLNNNEKEAANLLYVAVTRAKRRLFLN 1557
            T EQ+ +++ R   G  L V AYAG GKT TL AFA  +  +KILYL + +++ +EA  +FP DN  C +  Q+AW       G +  H L       + +L +T  +     V   + +F    D EI+  H           +    A        V+ +L+ AR +W           E  + A       HD+ +K YQLS P L  +                               W  IY WRGA + L     +  + +YLT  FRFG  IA VAN++ L++ G  RPL+G      GPA    +R +     + G+     R VT   +L  AI A+A G  V +    +   +    D+ +L  GK  ++R   L+   S  A  A  E +ED  +   + +L    D          +LS L + +   +D++     ++L+TAH AKGL+W+ VVL +DF D   ++     Q+ +      NLLYVAVTRA+R L +N
Sbjct:    4 THEQQPIIDYR---GPYLVVKAYAGCGKTATLEAFAHANTAIKILYLAYNKAIKDEAVSRFP-DNVICKTGHQMAWPGF----GTRYAHKLGNPKLTDVSKLLQTRDWGFVRHVMAVLNSFTSGADPEIDLCHFMTALTDEERDAYGDRA--------VERLLDGARTVW-----------EAMLDAEGPFVCAHDAYLKLYQLSDPQLDYDCILLDEAQDTNPVLGAIVAGQRGQKIFVGDKWQQIYRWRGAENALDKQIEQGAEAMYLTNSFRFGPMIAGVANAI-LKMQGETRPLVGL-----GPA----DRVQTSMSGIRGQYTILNRTVTG--VLTSAIDAVANGQTVYWNGGIEAYNLTALEDVFYLKNGKHSQIRDYRLKHFKSYDAYTAAAEASEDPEMLRTMRILKTYGDI-------PRLLSQLRQSTVDDIDEAD----VVLSTAHRAKGLEWNVVVLEEDFPDVFDVERVDPSQVGDE----LNLLYVAVTRARRTLVIN 461          
BLAST of mRNA_P-lacustris_contig1011.214.1 vs. uniprot
Match: UPI00096A8533 (UvrD-helicase domain-containing protein n=1 Tax=Halomonas massiliensis TaxID=1816686 RepID=UPI00096A8533)

HSP 1 Score: 154 bits (389), Expect = 4.850e-36
Identity = 166/542 (30.63%), Postives = 236/542 (43.54%), Query Frame = 1
Query:  127 ALTTEQREVVNTRMEVGDILKVVAYAGTGKTHTLRAFAQTHPDLKILYLVFTRSVANEAEEKFPRDNSTCLSFSQLAWQKMDLPTGQKLTHNLKTAIHAILKRLDRTTPYTHAIIVANAIGAFCRSMDTEINAGHVRIPWRVS-PSPSRSGHAKAPKPPPPVQWVLETARAIWVRMRIPRSSENERCVSARERIHPTHDSIMKEYQLSKPDLSVNWD----------------------------------AIYSWRGARDYLKS--AKSNKTLYLTQVFRFGNSIASVANSVLLRLIGVRRPLLGSLALSNGPAKVIFERERHEWLQLDGESQGRYVTNQLLLREAIAAMARGDRVAFQDKKTVLV--------QDARDLCHLIAGKKGRVRSKEL-REIGSISALRAMLEEAEDDHLKTWIPLLNMVDDFMANGKTPEEILSDLDRVSECAVDKSSTGPLMILTTAHSAKGLDWDTVVLGDDFD--FHPLDGNTRLQLNNNEKEAANLLYVAVTRAKRRLFLNPTLANQLRAYGMWDSLS 1608
            ALT EQ+ V N +   G  L V AYAGTGKT TL AFA+ +PD +ILY+ + R++  +A+ +FP  N TC +  QLA+  +      KL+ NL+  +  I   ++ T  ++ A  +   I AF  S D  I+  H    W +S  + S++   +A         V+  A+ +W  M          C      +  THD   K YQLS+PDLS  +D                                  AIY WRGA+D + S   K  K + +   FRFG  I++ AN+ LL L G + PL G   LS     VI   +     QL  +S    VT   L R  +  M      + +     LV         D  DL  L   K+  +R+K+L R+    +  +A+ EE +D  +   I +L+    F    K  E+ LS            S     +++TTAH AKGL+W+ V L DDF   F  LD   R           NL+YVA TRAK  L +N  L   +  +     LS
Sbjct:    4 ALTEEQQPVANFK---GQKLVVKAYAGTGKTTTLVAFAKANPDARILYVAYNRAIREDAQARFP-SNVTCKTTHQLAYAAIGKDYRHKLSPNLR--LRDITDAVN-TFDWSLAQDIRATIHAFAISADKTIDRHH----WPISLDATSKAKDRQA--------IVIHHAKRLWKAM----------CDVENREVSMTHDGYFKLYQLSQPDLSSRYDIVLLDEAQDSNPCAEAIVIDQPRCRVLLAGDPYQAIYQWRGAQDAMASHRVKDAKVMRIATSFRFGERISATANA-LLALRGEKVPLRG---LSQRQDCVIPSNQ----FQLK-QSPVPQVT--FLARTMMGVMQTALHFSRRKLSVHLVGGGDSYPLADMEDLFWLSRNKRDHIRNKQLLRDFNDFTQYKAIAEETKDPEMLRAIKVLDTYPHFDQEMKMLEKRLS-----------ASPDDADIVVTTAHRAKGLEWECVYLVDDFPDLFDDLDPAER-------DAEINLMYVAATRAKTLLAINTQLQKVVTRHNRAKGLS 487          
BLAST of mRNA_P-lacustris_contig1011.214.1 vs. uniprot
Match: A0A023WZ33_PSEST (DNA helicase n=4 Tax=Pseudomonas stutzeri group TaxID=136846 RepID=A0A023WZ33_PSEST)

HSP 1 Score: 153 bits (386), Expect = 1.440e-35
Identity = 152/518 (29.34%), Postives = 232/518 (44.79%), Query Frame = 1
Query:  127 ALTTEQREVVNTRMEVGDILKVVAYAGTGKTHTLRAFAQTHPDLKILYLVFTRSVANEAEEKFPRDNSTCLSFSQLAWQKMDLPTGQKLTHNLKTAIHAILKRLDRTTPYTHAIIVANAIGAFCRSMDTEINAGHVRIPWRVSPSPSRSGHAKAPKPPPPVQWVLETARAIWVRMRIPRSSENERCVSARERIHPTHDSIMKEYQLSKPDLSVNWDAI------------------------------------YSWRGARDYLKS--AKSNKTLYLTQVFRFGNSIASVANSVLLRLIGVRRPLLGSLALSNGPAKVIFERERHEWLQLDGESQGRYVTNQLLLREAIAAMARGDRVAFQDK-KTVLVQDARDLCHLIAGKKGRVRSKEL-REIGSISALRAMLEEAEDDHLKTWIPLLNMVDDFMANGKTPEEILSDLDRVSECAVDKSSTGPLMILTTAHSAKGLDWDTVVLGDDFDFHPLDG-NTRLQLNNNEKEAANLLYVAVTRAKRRLFLN 1557
            A T EQ+  +++   +  ++K+VA+AGTGKT TL  +AQ  P  +ILYL + +SV   A+EKFP  + TC +   LA+  M      KLT NL+    A   R   +  +     V + + AF  S D  I+  HV    R+     +    K          ++ +A  +W RM   R +           +H THD   K + L++PDLS  +D +                                    Y +RGA D L +      +T YLTQ FRFG ++A VAN + L   G  RPL+G L       K + E   H  +        R V    ++  A+ A A+GD++ +     +  +QD  DL  L  G++  +++K L +E         +  E++D  +   +  + +V  +  N   PE      D++   AV K      + ++TAH AKGL+WD V L DDF F P +  NT+ Q     ++  NLLYVA TRA + L +N
Sbjct:    4 AFTHEQQPAISS---LARLIKLVAFAGTGKTTTLVGYAQARPQQRILYLCYNKSVEVTAKEKFPL-HVTCKTSHGLAYGAMGAKYRHKLTGNLRLTDIA---RAISSQNWEFVRAVQDTLNAFLASADDSISLDHVPSS-RLKNERMKRAAGK----------IVASADLLWKRMLDVRDTA----------VHQTHDGYQKAWALTRPDLSKRFDIVLADEAQDINPLLAGILADQARYGMGVVVCGDGHQMLYRFRGAVDALDAHWLDEAETHYLTQSFRFGPAVAKVANMI-LHFKGEHRPLVG-LGDPTRVTKALPEGLEHRTVLC------RTVIG--VIETALIAQAKGDKIFWAGGIDSYQLQDIEDLHSLAKGRRDLIKNKRLLQEYPDYDLYEEIANESQDSEM---LRTIRVVTQYSHN--LPELF----DKLRRTAV-KDEFEATLTVSTAHRAKGLEWDAVELSDDFSFEPFNPENTKEQF----EDEMNLLYVACTRAMKVLAIN 469          
BLAST of mRNA_P-lacustris_contig1011.214.1 vs. uniprot
Match: A0A661M9U4_9DELT (DNA helicase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661M9U4_9DELT)

HSP 1 Score: 156 bits (394), Expect = 1.630e-35
Identity = 153/516 (29.65%), Postives = 227/516 (43.99%), Query Frame = 1
Query:  112 MVDESALTTEQREVVNTRMEVGDILKVVAYAGTGKTHTLRAFAQTHPDLKILYLVFTRSVANEAEEKFPRDNSTCLSFSQLAWQKMDLPTGQKLTHNLKTAIHAILKRLDRTTPYTHAIIVANAIGAFCRSMDTEINAGHVRIPWRVSPSPSRSGHAKAPKPPPPVQWVLETARAIWVRMRIPRSSENERCVSARERIHP--THDSIMKEYQLSKPDLSVNW-------------------------------DAIYSWRGARDYLKSAKSNKTLYLTQVFRFGNSIASVANSVLLRLIGVRRPLLGSLALSNGPAKVIFERERHEWLQLDGESQGRYVTNQLLLREAIAAMARGDRVAFQDK-KTVLVQDARDLCHLIAGKKGRVRSKELREIGSISALRAMLEEAEDDHLKTWIPLLNMVDDFMANGKTPEEILSDLDRVSECAVDKSSTGPLMILTTAHSAKGLDWDTVVLGDDFDF---HPLDGNTRLQLNNNEKEAANLLYVAVTRAKRRL 1548
            M  +  LT EQ++V++  +   ++LK++A+AGTGKT TL  +A+  P ++ LYL F RSV  EAE KFP  N TC +   LA++   LP   KL +NL+  ++ + + LD  + Y    IV   + ++  S D E    H  IPW+     +R              + L+    +W  MR P            E I P  TH+  +K +QLSKP L  +                                  IY++RGA D ++  +  +TLYLT  FRFG  IA +AN +L      ++ L+G+    NG         R               TN  L  EA++  +   R+AF    +     D  D   L AG +  + +  LR   S   L A   E ED  +   + L  +V       K  +EI   ++RV E AV+       +ILTTAH AKG ++  + +  DF        D   +  L+++E    NLLYV VTRA  R+
Sbjct:    1 MESDLKLTQEQQDVISRDLYGDEVLKIIAFAGTGKTWTLLQYAKARPGVRFLYLAFNRSVREEAEVKFP-GNVTCKTAHGLAYRYTGLPYKHKLVNNLR--LNTLRRILDMKS-YGETKIVLEILKSYLCSADAEPGPQH--IPWQARGDKARR------------DYYLDKVVELWDMMRNP------------EIIEPGMTHEGYLKLFQLSKPRLDYDCILLDEAQDTNPVTADIVLSQVCPKILVGDPHQQIYTFRGAVDAMELIRGTETLYLTHSFRFGEEIAWLANKILKTFKQEKKKLVGAWKGGNGNGHGFGVIAR---------------TNATLFDEAVSLSSGSCRIAFLGGIEGYRFSDILDAYRLYAGLRREIANPFLRSFRSYHDLEAYGREVEDWEI---LSLCKVV------SKYGDEIPYLVNRVRETAVEIEEAD--VILTTAHKAKGQEFRGIRVCKDFPAMFRQTEDSKFKTVLSSDE---FNLLYVTVTRAMDRI 457          
BLAST of mRNA_P-lacustris_contig1011.214.1 vs. uniprot
Match: UPI00145ADC4F (F-box DNA helicase 1 n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=UPI00145ADC4F)

HSP 1 Score: 158 bits (399), Expect = 1.740e-35
Identity = 169/596 (28.36%), Postives = 255/596 (42.79%), Query Frame = 1
Query:  130 LTTEQREVVNTRMEVGDILKVVAYAGTGKTHTLRAFAQTHPDLKILYLVFTRSVANEAEEKFPRDNSTCLSFSQLAWQKMDL--PTGQKLTHNLKT-AIHAILKRLDRTTPYTHAIIVANAIGAFCRSMDTEINAGHVRIPWRVSPSPSRSGHAKAPKPPPPVQWVLETARAIWVRMRIPRSSENERCVSARERIHP----THDSIMKEYQLSKPDLSVNWDAI---------------------------------YSWRGARDYLKSAKSNKTLYLTQVFRFGNSIASVANSVLLRLIGVRRPLLGSL---ALSNGPAKVIFERERHEWLQLDGESQGRYVTNQLLLREAIAAMARGDRVAFQDKKTVLVQDARDLC--HLIAGKKG----RVR--------SKELREIGSISA---------------------LRAMLEEAEDDHLKTWIPLLNMVDDFMANGKTPEEILSDLDRVSECAVDKSSTGPLMILTTAHSAKGLDWDTVVLGDDF-----DFHPLDGNTRLQLNNNEKEAANLLYVAVTRAKRRLFLNPTLANQLRAYGMWDSLSLQGTTASDPLHPVPCCSYGC 1668
            LTTEQ+ +++  ++   +LK++A+AGTGKT TL  +A   P L  LY+ F RSVA EAE +FP  N  C +   LA++ + +     +KLT+N+   +I+++L +      +  + IV   I  F  S D EI+  HV   +          H   P P       LE AR +W +MR           + RER  P    THD  +K +QLS+P LS  +D I                                 Y++RGA + L +       YLTQ FRFG  IA V  ++L     V++ L+G      +S+  A  +    R       G S  R  T         A ++R +   F +   V + DA   C  H + G +G    R++        SK L+E  S  A                     LR   E+ ED  L+  + ++    D     + PE +     R+  C  D+ +     IL T H AKG+++DTV++ DDF       H L  +    +N+  K+  NL+YVAVTRAK  L ++ ++   L   G +   S   +       P+PCC   C
Sbjct:  444 LTTEQQMILSHEIQRDHVLKIMAFAGTGKTTTLVKYAGQRPHLHFLYVAFNRSVAKEAERRFPA-NVDCKTIHALAFRDIGVRYQRSKKLTYNMMPFSINSVLPK--GRAGFRKSKIVMQTISTFLASTDEEIDLTHVPCFYESKK------HRNTPIPERERPLFLEDARYVWRKMR-----------NVRERSKPAFYMTHDGYLKLWQLSRPCLSREYDVIFIDEAQDCTPAILDIMLSQSCGKILVGDPHQQIYTFRGAVNALDTVDHTHIFYLTQSFRFGAEIAYVGAAILKVCKNVQKILVGGKQKGGVSDESAGAVATSVRK------GVSPSRGKT---------AILSRTNITVFSE--AVDLTDANSKCRVHFVGGIQGIGLDRIKDIWNIMQDSKRLQEGQSYEARFIKDPFLRSFAKKCEKPFVALRLYAEQTEDRELEAKLTIVERYGD-----RIPELV----SRLKMCHEDEYTKADF-ILGTVHKAKGMEFDTVMVTDDFVKIPASRHNLRFHRSFVINDIPKDEWNLMYVAVTRAKSSLIISESIRRLLTLDGEYFLKSDMPSALIKDNQPLPCCVSNC 992          
BLAST of mRNA_P-lacustris_contig1011.214.1 vs. uniprot
Match: A0A355QDF8_9DELT (DNA helicase n=5 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A355QDF8_9DELT)

HSP 1 Score: 150 bits (378), Expect = 8.990e-35
Identity = 147/516 (28.49%), Postives = 216/516 (41.86%), Query Frame = 1
Query:  130 LTTEQREVVNTRMEVGDILKVVAYAGTGKTHTLRAFAQTHPDLKILYLVFTRSVANEAEEKFPRDNSTCLSFSQLAWQKMDLPTGQKLTHNLKTAIHAILKRLDRTTPYTHAIIVANAIGAFCRSMDTEINAGHVRIPWRVSPSPSRSGHAKAPKPPPPVQWVLETARAIWVRMRIPRSSENERCVSARERIHPTHDSIMKEYQLSKPDLSVN-------------------------------WDAIYSWRGARDYLKSAKSNKTLYLTQVFRFGNSIASVANSVLLRLIGVRRPLLGSLALSNGPAKVIFERERHEWLQLDGESQGRYV--TNQLLLREAIAAMARGDRVAFQDKKTVLVQDARDLCHLIAGKKGRVRSKELREIGSISALRAMLEEAEDDHLKTWIPLLNMVDDFMANGKTPEEILSDLDRVSECAVDKSSTGPLMILTTAHSAKGLDWDTVVLGDDFDFHPLDGNTRLQLNNNEKEAANLLYVAVTRAKRRLFLNPTLANQL 1578
            LT EQR++V+  +  G+ILKVVA+AGTGKT  L  FA+  P L++LY+ F +SV  EAE++FP  N  C +   LAW+   L    KL + ++         LD+   +  A  V + +  F  S D  +++ HV    R    P              +   ++ AR +WVRM  P+             +   HD  +K +QLSKP+L  +                                 AIY +RGA D L     N T YLTQ FRFG +IA  A SVL +       + G+              E+ + L     S   Y+  TN  L  +A   +           +   +    +   L  G+K  VR   L+   S  ALR    + ED     W+    +V+     G  PE +   L++    A +++     ++ +T H AKGL++  V L DDF     +G   L       E  N++YVA TRA  RL  N  L + L
Sbjct:    3 LTAEQRDIVDFPLRHGEILKVVAFAGTGKTTVLEQFARARPSLRLLYVAFNKSVQQEAEQRFPT-NVHCRTIHSLAWRSEGLRFRHKLVNQIRANQVMDWLNLDQ---HEVARFVIDTLQNFLVSADPRLHSAHVPTIARTHFGPKH------------LPDFVQQARELWVRMSDPQHE-----------VPMLHDGYLKLFQLSKPELPYHIILLDEAQDTNPVTAQLLLQQTCAKIMVGDPHQAIYQFRGAIDVLSKVPVNATRYLTQSFRFGPTIAQAATSVLRQFKAESNAIRGA--------------EKTDQLGRVQGSPFAYLARTNAALFDQATQYLGLRKFGFVGGVQGYQLPVITETWKLFEGRKKEVRDSYLKTFSSYEALRNYATQVEDFE---WLGRCRLVEKHQ--GMIPELVEEMLEQ--SVAQEEAE----VLFSTVHKAKGLEFAQVFLADDFPVLVREGRP-LPREELATEEVNMIYVAATRAIDRLQPNSRLQSFL 465          
BLAST of mRNA_P-lacustris_contig1011.214.1 vs. uniprot
Match: A0A8C4HK65_DICLA (DNA helicase n=2 Tax=Moronidae TaxID=42148 RepID=A0A8C4HK65_DICLA)

HSP 1 Score: 155 bits (393), Expect = 9.340e-35
Identity = 169/625 (27.04%), Postives = 271/625 (43.36%), Query Frame = 1
Query:  130 LTTEQREVVNTRMEVGDILKVVAYAGTGKTHTLRAFAQTHPDLKILYLVFTRSVANEAEEKFPRDNSTCLSFSQLAWQKM--DLPTGQKLTHNLKT-AIHAILKRLDRTTPYTHAIIVANAIGAFCRSMDTEINAGHVRIPWRVSPSPSRSGHAKAPKPPPPVQWVLETARAIWVRMRIPRSSENERCVSARERIHPTHDSIMKEYQLS--KPDLSVNWDA---------------------------------IYSWRGARDYLKSAKSNKTLYLTQVFRFGNSIASVANSVLLRLIGVRRPLLGSL---ALSNGPAKVIFERERHEWLQLDGESQGRYVTNQLLLREAIAAMARG--DRVAF-QDKKTVLVQDARDLCHLIAGKK------GR---------VRSKELREIGSISALRAMLEEAEDDHLKTWIPLLNMVDDFMANGKTPEEILSDLDRVSECAVDKSSTGPLMILTTAHSAKGLDWDTVVLGDDFD-----FHPLDGNTRLQLNNNEKEAANLLYVAVTRAKRRLFLNPTLANQLRAYGMWDSLSLQGTTASDPLHPVPCCSYGC-DCSDAHGVMATAADPVGVNDGDISRRHGCRFYYVGSGSGAALCRECV 1809
            LT EQ+++++  ++   ++K+VA+AGTGKT TL  +A+  P L+ LY+ F +SVA+EA+ +FP  N  C +   LA+  +        KLT NL   A++++L   +    +  A +VA  + AF  S D  I   HV     V+    R    +  KP       +  A+ IW +M+    + NE   + ++  + THD  +K +QL   KP LS  +D                                  IY++RGA + L         YLTQ FRFG  I+ V  ++L     V++ L+G      + +  A  +    R    Q  G++      N  +  EA+         R+ F    +++ ++   D+ HL+ GK+      GR         +R    R      AL++ + + ED  L      L++V+ +   GK   E+++ L+   EC  +K+      IL T H AKGL++DTV++ DDF       H L  N+    +    +  NLLYVAVTRAK  L +  T++  L   G +   S    ++     P+PCC   C +C             +   DG +S             +G  LC  CV
Sbjct:  459 LTREQQQILSHNIQQDQVVKIVAFAGTGKTTTLVKYAEQRPHLRFLYVAFNKSVASEAQRRFP-SNVDCKTVHSLAFSDVGRSYQIHNKLTFNLNPFALNSVLP--EGRGGFVKAKLVATTLEAFMASTDETITISHVPS-IHVTKKDQRQAIRETEKP-----LFVHDAQTIWNKMK----ALNE---TKQQAHYMTHDGYLKLWQLQIPKPKLSDQYDVLFIDEAQDCTPAIMDVLLSQQCGKVLVGDPHQQIYTFRGAVNALNIVDHTHIFYLTQSFRFGAEISYVGATILKVCKSVQKILVGGKQKGGVCDETADNVRATMRTGVSQCRGKTAILSRCNLSVFSEAVRLTDANLHCRIHFIGGVQSIGLKKILDVWHLMQGKEEETKGSGRRTKFIRDPFIRLFAKRNPDPFLALKSYVTQTEDKELDA---KLSIVEKY---GKRIPELVTRLENCFECDFNKAD----FILGTVHKAKGLEFDTVMVSDDFSKVPSSSHNLRYNSDFSFDKIPDDEWNLLYVAVTRAKTSLIITKTISRILTMVGEYFLKSEMPGSSLKAGEPIPCCVTDCPNCLTPGAAFIMRKQQMTCTDG-VS-------------AGGPLCERCV 1043          
BLAST of mRNA_P-lacustris_contig1011.214.1 vs. uniprot
Match: A0A8J9ZZT0_BRALA (Hypp3153 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZZT0_BRALA)

HSP 1 Score: 155 bits (392), Expect = 1.500e-34
Identity = 154/532 (28.95%), Postives = 240/532 (45.11%), Query Frame = 1
Query:  118 DESALTTEQREVVNTRMEVGDILKVVAYAGTGKTHTLRAFAQTHPDLKILYLVFTRSVANEAEEKFPRDNSTCLSFSQLAWQKMDLPTGQKLTHNLKTAIHAILKRLDRTTPYTH--AIIVANAIGAFCRSMDTEINAGHVRIPWRVSPSPSRSGHAKAPKPPPPVQWVLETARAIWVRMRIPRSSENERCVSARERIHPTHDSIMKEYQLSKP---------------------DLSVNWDA-----------IYSWRGARDYLKSAKSNKTLYLTQVFRFGNSIASVANSVLLRLIGVRRP-LLGSLALSN------GPAKVIFERERHEWLQLDGESQGRYVTNQLLLREAIAAMARGDRVA-FQDKKTVLVQDARDLCHLIAGKKGRVRSKELREIGSISALRAMLEEAEDDHLKTWIPLLNMVDDFMANGKTPEEILSDLDRVSECAVDKSSTGPLMILTTAHSAKGLDWDTVVLGDDF--DFHPLDGNTRLQLNNNEKEAANLLYVAVTRAKRRLFLNPTLANQLR 1581
            D   L+ EQ  ++N  ++  + +K++A+AGTGKT TL  + +  P LK L L F +SV   A++ FP  N  C +   LA++        K+  +LKT   ++ + L   + Y +  A  V + + ++  S++  +   HV     + P P+ +   K P P      + E A+ IW RM  P   +          ++  HD  +K YQLS+P                     D+ +N D            IY++RGAR+ ++      T YLTQ FRFG  IA VA  +L  L GVR+  L+GS    N      G   VI          L  E+      N+L +R A A    G ++    D   + +  A+ +   ++     ++ K +    S+  L+   E A+D  L   I ++           TP+ I     R+ E A D  S   + +LT+AH AKGL++DTV L DDF    +P+  N    ++ +EK   NLLYVA TRAK+ L L  T+   L+
Sbjct:  645 DTVRLSHEQLRIINHELKPRETIKIIAFAGTGKTTTLVEYTKLRPHLKFLMLAFNKSVQEHADKLFP-GNVVCKTVHSLAYKACGFRFRGKMAFSLKT--ESVARNLTNHSRYNYVFAKYVLDTLSSYIASVEDVVTTAHVP---EMKPGPNMT---KIPIPHQEKMQIAEEAQLIWDRMSDPADRD----------VYINHDGYLKVYQLSRPQITEFDCLLIDEAQDLTPAINDILLNQDVAKILVGDPHQQIYTFRGARNAMQGTACTHTYYLTQSFRFGPEIAYVAACLLDVLKGVRKKTLVGSSKTGNVMGRKQGQEAVICRMNS----TLFNEAVRLTNPNRLPIRIAFAGGLAGYQLGRILDIYYLSLTPAQRVKENVS-----IKDKFIGNFASLWKLKEFAERAQDVELSGKIRIVET-----HRHDTPKFIK----RIRERATDNMSLADV-VLTSAHKAKGLEFDTVRLADDFCGGTNPIGLNPWANMDEDEK---NLLYVAATRAKKSLLLTSTVMLALK 1135          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1011.214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLU8_ECTSI5.850e-16349.76DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
D7G6K8_ECTSI7.390e-4329.54DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
UPI0010FF66225.240e-3729.30UvrD-helicase domain-containing protein n=1 Tax=Ps... [more]
UPI00096A85334.850e-3630.63UvrD-helicase domain-containing protein n=1 Tax=Ha... [more]
A0A023WZ33_PSEST1.440e-3529.34DNA helicase n=4 Tax=Pseudomonas stutzeri group Ta... [more]
A0A661M9U4_9DELT1.630e-3529.65DNA helicase n=1 Tax=Deltaproteobacteria bacterium... [more]
UPI00145ADC4F1.740e-3528.36F-box DNA helicase 1 n=1 Tax=Periophthalmus magnus... [more]
A0A355QDF8_9DELT8.990e-3528.49DNA helicase n=5 Tax=Deltaproteobacteria bacterium... [more]
A0A8C4HK65_DICLA9.340e-3527.04DNA helicase n=2 Tax=Moronidae TaxID=42148 RepID=A... [more]
A0A8J9ZZT0_BRALA1.500e-3428.95Hypp3153 protein n=1 Tax=Branchiostoma lanceolatum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1011contigP-lacustris_contig1011:58690..71103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score501.1
Seed ortholog evalue7.4e-139
Seed eggNOG ortholog2880.D7FLU8
Preferred nameFBXO18
KEGG koko:K10300
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000151,GO:0000152,GO:0000724,GO:0000725,GO:0000737,GO:0000785,GO:0001932,GO:0001934,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003690,GO:0003697,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006282,GO:0006302,GO:0006308,GO:0006310,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008156,GO:0008219,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009607,GO:0009719,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010498,GO:0010556,GO:0010558,GO:0010562,GO:0010569,GO:0010604,GO:0010605,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0015616,GO:0016043,GO:0016462,GO:0016567,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017116,GO:0017117,GO:0019005,GO:0019219,GO:0019220,GO:0019222,GO:0019439,GO:0019538,GO:0019941,GO:0023051,GO:0023056,GO:0030163,GO:0030674,GO:0031146,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031399,GO:0031401,GO:0031461,GO:0032268,GO:0032270,GO:0032392,GO:0032446,GO:0032508,GO:0032991,GO:0033202,GO:0033554,GO:0034641,GO:0034645,GO:0034655,GO:0035561,GO:0035562,GO:0036211,GO:0042325,GO:0042327,GO:0042623,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043138,GO:0043140,GO:0043142,GO:0043161,GO:0043170,GO:0043224,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043632,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0045005,GO:0045738,GO:0045910,GO:0045934,GO:0045937,GO:0046483,GO:0046700,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051100,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051276,GO:0051603,GO:0051716,GO:0060090,GO:0060255,GO:0060542,GO:0065007,GO:0065009,GO:0070035,GO:0070647,GO:0071103,GO:0071216,GO:0071495,GO:0071704,GO:0071840,GO:0072396,GO:0072402,GO:0072423,GO:0072429,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0090329,GO:0097159,GO:0140097,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1902229,GO:1902231,GO:1902494,GO:1902531,GO:1902533,GO:1904949,GO:1990234,GO:1990518,GO:2000042,GO:2000104,GO:2000112,GO:2000113,GO:2000779,GO:2000780,GO:2001020,GO:2001021,GO:2001022,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG0210@1,KOG2108@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons11
Model size3511
Cds size1896
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815282.2700593-UTR-P-lacustris_contig1011:58689..601931622815282.2700593-UTR-P-lacustris_contig1011:58689..60193Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1011 58690..60193 -
1693493449.0074894-UTR-P-lacustris_contig1011:58689..601931693493449.0074894-UTR-P-lacustris_contig1011:58689..60193Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1011 58690..60193 -
1622815282.3872218-UTR-P-lacustris_contig1011:70992..711031622815282.3872218-UTR-P-lacustris_contig1011:70992..71103Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1011 70993..71103 -
1693493449.1426373-UTR-P-lacustris_contig1011:70992..711031693493449.1426373-UTR-P-lacustris_contig1011:70992..71103Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1011 70993..71103 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815282.280889-CDS-P-lacustris_contig1011:60193..606971622815282.280889-CDS-P-lacustris_contig1011:60193..60697Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1011 60194..60697 -
1693493449.0190318-CDS-P-lacustris_contig1011:60193..606971693493449.0190318-CDS-P-lacustris_contig1011:60193..60697Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1011 60194..60697 -
1622815282.2936301-CDS-P-lacustris_contig1011:62966..630651622815282.2936301-CDS-P-lacustris_contig1011:62966..63065Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1011 62967..63065 -
1693493449.0280352-CDS-P-lacustris_contig1011:62966..630651693493449.0280352-CDS-P-lacustris_contig1011:62966..63065Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1011 62967..63065 -
1622815282.3058584-CDS-P-lacustris_contig1011:63777..639181622815282.3058584-CDS-P-lacustris_contig1011:63777..63918Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1011 63778..63918 -
1693493449.03723-CDS-P-lacustris_contig1011:63777..639181693493449.03723-CDS-P-lacustris_contig1011:63777..63918Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1011 63778..63918 -
1622815282.3166986-CDS-P-lacustris_contig1011:65258..654161622815282.3166986-CDS-P-lacustris_contig1011:65258..65416Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1011 65259..65416 -
1693493449.046127-CDS-P-lacustris_contig1011:65258..654161693493449.046127-CDS-P-lacustris_contig1011:65258..65416Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1011 65259..65416 -
1622815282.3257864-CDS-P-lacustris_contig1011:65635..657121622815282.3257864-CDS-P-lacustris_contig1011:65635..65712Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1011 65636..65712 -
1693493449.056781-CDS-P-lacustris_contig1011:65635..657121693493449.056781-CDS-P-lacustris_contig1011:65635..65712Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1011 65636..65712 -
1622815282.3340733-CDS-P-lacustris_contig1011:67160..672251622815282.3340733-CDS-P-lacustris_contig1011:67160..67225Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1011 67161..67225 -
1693493449.06564-CDS-P-lacustris_contig1011:67160..672251693493449.06564-CDS-P-lacustris_contig1011:67160..67225Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1011 67161..67225 -
1622815282.342452-CDS-P-lacustris_contig1011:67739..678531622815282.342452-CDS-P-lacustris_contig1011:67739..67853Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1011 67740..67853 -
1693493449.0763981-CDS-P-lacustris_contig1011:67739..678531693493449.0763981-CDS-P-lacustris_contig1011:67739..67853Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1011 67740..67853 -
1622815282.3519838-CDS-P-lacustris_contig1011:68828..689031622815282.3519838-CDS-P-lacustris_contig1011:68828..68903Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1011 68829..68903 -
1693493449.087928-CDS-P-lacustris_contig1011:68828..689031693493449.087928-CDS-P-lacustris_contig1011:68828..68903Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1011 68829..68903 -
1622815282.3618267-CDS-P-lacustris_contig1011:69418..697451622815282.3618267-CDS-P-lacustris_contig1011:69418..69745Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1011 69419..69745 -
1693493449.1053252-CDS-P-lacustris_contig1011:69418..697451693493449.1053252-CDS-P-lacustris_contig1011:69418..69745Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1011 69419..69745 -
1622815282.3697133-CDS-P-lacustris_contig1011:70199..703701622815282.3697133-CDS-P-lacustris_contig1011:70199..70370Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1011 70200..70370 -
1693493449.117272-CDS-P-lacustris_contig1011:70199..703701693493449.117272-CDS-P-lacustris_contig1011:70199..70370Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1011 70200..70370 -
1622815282.3783815-CDS-P-lacustris_contig1011:70827..709921622815282.3783815-CDS-P-lacustris_contig1011:70827..70992Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1011 70828..70992 -
1693493449.1316566-CDS-P-lacustris_contig1011:70827..709921693493449.1316566-CDS-P-lacustris_contig1011:70827..70992Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1011 70828..70992 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1011.214.1prot_P-lacustris_contig1011.214.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1011 60194..70992 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1011.214.1

>prot_P-lacustris_contig1011.214.1 ID=prot_P-lacustris_contig1011.214.1|Name=mRNA_P-lacustris_contig1011.214.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=632bp
MVDESALTTEQREVVNTRMEVGDILKVVAYAGTGKTHTLRAFAQTHPDLK
ILYLVFTRSVANEAEEKFPRDNSTCLSFSQLAWQKMDLPTGQKLTHNLKT
AIHAILKRLDRTTPYTHAIIVANAIGAFCRSMDTEINAGHVRIPWRVSPS
PSRSGHAKAPKPPPPVQWVLETARAIWVRMRIPRSSENERCVSARERIHP
THDSIMKEYQLSKPDLSVNWDAIYSWRGARDYLKSAKSNKTLYLTQVFRF
GNSIASVANSVLLRLIGVRRPLLGSLALSNGPAKVIFERERHEWLQLDGE
SQGRYVTNQLLLREAIAAMARGDRVAFQDKKTVLVQDARDLCHLIAGKKG
RVRSKELREIGSISALRAMLEEAEDDHLKTWIPLLNMVDDFMANGKTPEE
ILSDLDRVSECAVDKSSTGPLMILTTAHSAKGLDWDTVVLGDDFDFHPLD
GNTRLQLNNNEKEAANLLYVAVTRAKRRLFLNPTLANQLRAYGMWDSLSL
QGTTASDPLHPVPCCSYGCDCSDAHGVMATAADPVGVNDGDISRRHGCRF
YYVGSGSGAALCRECVEGHAARGEGVEEEEDRGLPVRFAIVASIKNGLNP
GVLCLSRASCEERERVRSRGKAVRVVSSEIR*
back to top

mRNA from alignment at P-lacustris_contig1011:58690..71103-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1011.214.1 ID=mRNA_P-lacustris_contig1011.214.1|Name=mRNA_P-lacustris_contig1011.214.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=12414bp|location=Sequence derived from alignment at P-lacustris_contig1011:58690..71103- (Pleurocladia lacustris SAG_25_93)
AGGTTTCCTCCGACCCGAAAGACGACGGCCGAGGGCGATGACGGCGAGGA CCCAGGGTTGAGTCAATCTTCCAGCATTTCCACGCAGATAGTCAGCCCCG AGCAGAAAGTGATGGTCGACGAGTCTGCGCTTACCACCGAGCAGCGAGAG GTGGTGAACACTCGAATGGAAGTCGGGGACATCCTGAAGGTTGTGGCCTA TGCCGGCACAGGGAAGACGCATACTCTGAGGGCGTTTGCCCAGACACACC CCGACCTCAAGATCCTGTATCTCGTGGTGGGTGCACGTCGCAGTCAATGC CCTAGCACGCAAGGGGTGATAAGGAGCTGTGGTTTTTCATCCTCTTTCAG TGGCGATAGATATCTTAGAAATTGTTCTTGAGTATTGCCCTAACCTGGAA CTGTTGTCTGCAACGCTGAACAGAACCCCAATTGCAGACGGCTTTTGTTA TGGTCGATGGGCTCGCGAGGATGTGTATCTAGCGCTCCCGTGCACACGAG CATGGTGTGCCTCCTGCGGTGGCTATTTCCTACAGCGCTTCACTGGTTTT GCCTTCGCTATCGCGGTCTTGCCCTGTTGTGACTGGAAATGGCACCCAGG ATACCTCCATGAGGGGTTTTGAGTAACAGCCTCCAGTCTGAAGCTTGGTT CATCTCCTGATCTGATGTATTATGTTCATGCAACCCACTCTCTTCGTTGT CCCTGCTCCCTTCCCTTCACTTGCGTTTTTCAGTTCACCAGGTCCGTGGC CAATGAAGCCGAGGAAAAATTCCCGCGTGACAACTCGACCTGCTTGTCAT TTAGCCAGTTGGCTTGGCAGAAGATGGATCTGCCAACTGGACAAAAGTTG ACGCACAACCTCAAGACGGCAATACATGCCATTCTTAAGAGGCTGGACAG AACTGTGAGCCGAGCGTTCCTCCTCGCGTGTTATGAACTTGCGTCCAGCG GCGCCAAATGACGCTGAAGCGACGCGGAAACAGGAGAGCGTGCACAACAA CACAAGGGTTTCTGCCTTTGTCCTCCCTCCCTCCCGTGTGTACAATGTAG CTTTCCTTCCGTCCTGTCCGTGTCACAAGTCATTCGTGATCAGCGCTACA ATGAGAACACCCTCAACTCCCCAATGTTGCTCACGTACCGTGTTCTAGTT CCCTCTAGCCGGGCGACGGATGCGGGCTCGGTTGGTTGTTGTCTGATTCC CCACTCCATGCAGTAGGGCCACTGACGTGCTGGTCGAACCAGGAACATCC TTGTAACATCCTTAGGATAACTTACTCTTGCACCCCATCGCTTCCTCCTG CAATATACGCCGGCTCGCGGGCCTCGTCGTTGTTGTTGATGTCCACTGGA CTCCCAAGACGCCGTACACGCATGCCATCATCGTCGCTAACGCTATTGGG GCCTTCTGCCGCTCCATGGACACCGAGATCAACGCCGGACACGTGAGGAT TCCTTGGCGGGTCTCACCGTCGCCATCTCGGAGTGGTCATGCAAAGGCGC CCAAACCGCCGCCTCCAGTACAGTGGGTTCTTGAAACCGCAAGGGCGATT TGGGTGAGGATGCGGATACCGCGCTCTTCCGAGAACGAGAGATGCGTGAG CGCGAGAGAGCGGATCCATCCGACGCATGACAGTATCATGAAGGAGTATC AGCTTTCTAAACCGGACTTGAGCGTCAACTGGGACGTGATCATGCTGGAC GAGGCGCAGGATATCAACTTTTGTCAAGGGGACATCATACGCCGGCAGAC AAAGTGCCGCGTCATCTTGGTCGGAGATAACCAACAGGCAACTGAACGCG TGCTTAATTGAAATGCCTCTCGTAGCGCGGCAATCGATGGGGACAGTGTT CTACTTGGCAACACTTTGTTGGTCAACTCCACCATCGTTGGCGTGTTTTT CCACCGGGGTTCGTCGACGCTCGAGAACCCAGCATCGTCTTTGCCTGATG AGTGTCACCATTTTAGCTTGGGACTTTGTCGCTCGCAATAGCACCCCCAA GTAAGGCCAACCGTGGTCATGAGTTTGTCCATGGACGGGCTATGAAACAA GCTCCTCGACTTTCCCGCGCTGCTGCTGACATAAACAAGGCTTTTGTTGC GCCTTCATGTTTTGTCAATCAAGAACACCGCTCAAAGCCGTTCATCGTTC TCGCGGTATTGACGGGCTTGGTTGTGCATGCGTCACTCGCGCCCAAACAG GCGATCTACAGCTGGCGTGGGGCGAGGGACTACCTTAAGAGCGCAAAGAG CAACAAGACGCTATATCTCACCCAGGTATTGTATGGTGGTCGGCATGGCT CGAAACGAACATCGCCCTTTAGTTATTCCTCCGATAGTCCAACAGCCCCA AGTGTTACAAGGAAGGGGGTTCTCTTGCCCGGGACGTAGTCGTGAAAGCG GAACAGCCAATAGACAAGAGACACATGGTGGGCGATTATACGTTTAGAGG TGCTGTGACAGCATTCGCTCCTGGTTTGAGGTGTTGTGGTTGGACGCATG TCTGCTTTTCTTTGGGGAACGGACGGAAAGCGGTGTACGTCCTGTTTCCA GGCCGACAAACCTTTTACCAGAAATATCCAACGCAACGCATTTTACGCGA CGCTGATGATTCATTTATCCACTTATCCTTGTGCCGTGAGTTGGCACTGG CGGACGGCGGTACCTCAGGCACAGGATATCAGCTTGGTTGTTACCGTTGC TGGCAGCGACCCTGACGGCTGGGCTTGATGTACCACCTCCCGCCAGTGCC GAACATGGTACAGAGCTGTGTGGATCGTCAGCGTCGCGGAAAGCGCTTGA TCCTCGGGTTTTTCTGGTGTAACGCTTGGGTGGTTGGAATGACAAGGCGG TATATTCCGCTTTGTGGCTTTTCCGCCTTGCCCCTTGTCGTCCACTTGCT TTGAGCAACGCCTCGCCACTTGCCGCGTCTGTATGCATAGACACGTGCCC GCCGGTAGCCCCCCCAACACACACACGTACTCCCCGCTGCTCCGTCTCAA ATAGGACGCGTGGTCAATAGTCGAAAGGTCGAGGCAAACAACAGTTTAGT CCTTCCGCCCAGCCGCTGTATGCGTTTTCACCCTTGGAGGGTGTGTCGTC TGTCCGCTACCCTTGGCGTTGTGACAAATGGCAAGCCGAGGCCAAACGAA ATACGCGACTACCGCTGAAAAACAGTTACGGTGCCCCCCATTACCCCTTG TTTTGTGTCGCTTGGCCGTTTTTTGCTGGATCCCTCCCTCCTTCGTCAAG GTCTTTCGGTTCGGCAACTCCATCGCCAGCGTGGCGAACTCGGTGCTGCT CAGGCTTATCGGGGTGAGGCGCCCGCTGTTGGGAAGCTTGGCGTTATCGA ACGGTCCGGCCAAGGTACGACCAACCAATCAAGCCGCACACGCGCAACCT CGACCAAGCCTCGATTTCGAAGCTGCTCAAGTTTGTCGCTGTTTGGATGC GAGATCGGGGCCACTGGTTAACTGACTCGCTCTCCTGATGCAGCACCAAC ATCAAGCGGGAGGCTGGAGGCTGTGTGTTCCTGTGGTCGCGCGAAATCCC TTGGCAACGGCTTGTCCATCGCGGCGAGAAGATTGGTGATTGGCCTTCGG CTCCAATCATGCCACGAAGAATGGCCTCAACACCATTGGAAGGGAGGGAG GGAAGAGATACCCAGCTCGTACACGACGCGCTTGCTTTTGGGTGAATTTC AAAGAATCGACCGACACATGGTCATGGGGCCAAGCAAGCGAAGGCGTGCG ATCCTTCCCTCGTGGCCATGCATGCCTACATAATATATACACTCGCGAGC TGCTTCCAATACAACCATCCATGAATGTGGTTCATTTTTTGTCGACTGGT TGTGCACGACTGGTTTCGTCTGGGCTAGGTTATATTCGAGCGCGAGAGGC ACGAGTGGCTTCAGCTGGACGGCGAGTCTCAAGGACGCTACGTGTTCATT GCAAGTTGAGTCCTTGCTGATGAAAATGGTACCGATTGTGCGATGTATCA TACGCCAGGACACTCCTATCCTATCCTTGTGTCAAAAAATGAAAGAATGG TCTCACTCTTGGTTAGTAATGCACAAAATATGTCGTTGTGGTGACAAAGG CTGGTTTGGATCTCGCCGGACTCACGCAGCCGTCCGCCGTTTGAGAGCGA ATCCATATTCGCGATAGTTTCGAGTCTCGCCAATCTGTAGGCTCTCCTGA AACCAGCCAGGGTCTCCTCAGCCAGTGACTCTTCCCCCTGGCCAAGGCGG ACTGGCAATCCACCACAAAGACGTGTGATGTAGAAACAGAGTGAACTAAC TTTCATGGGCTCCCTTCAGTCATGCCCTCATCCCCGATATATCTCTCATC TCCAATTATATGGAAACCCTGACCCACCATATGGTAATGGAAACCCTGAC CTACCGTATCTTACTGACATGAATACATCCAACGATTGTTACGCTACTAA TGATAACCAGGTGCCCTAGGTCTACAAATCCCGTCTACTCCGCTGTATGC AGAGCCTGTCTTTGAAACTCACAGCATGATGTGACCGCCAATTGCATCCT CGAAGCTTGAAAGTCTTGGCCATGATCATGTGCTCAAAAACACCCACGGT TGATTGTCCGCGCCTGTTCTAATTTTCCCGTTGAATGTTGGCGTGACGCG AGCATTCGTACCGTATCGCGCCCGCTCATGTCTTCGTTCGTTCACGCTCT TGTTTGGTTTTTTGTTGATGCCCTCGTTGTTAACATGCCGCGCCTACTAC TGTTCCAGTTCATCGTGACCCCATCGTGCCCCCCGTTTTTCTGTTTCGGA GCCGCAACAGGCCCAGACCCGTGATCGGGTCCGTTTGTTGGTTTCCTGGT TTGGGGTGTTTGGTGCCGCTTATGTTGGGCGGCAAGACGCAGGCGCATCC GTCCTTGCGATATAATGCCTCCCCGACAAGCGCCAATAGGGGAAAAATAA GAAAAAACAAAAAAAGCGAATACAGTAGTAGCTTGACCAATAAACCCCTC AAAACTGCTGTGGCAGAAACGCTTGAAGAGAATCTCCGCAGCAGTCGACG GTATGTGTCTCCTTGATCGTTCTCTGCAGCATATTGCACCTGATATTTAC CTGACAGATAATGTTAGGGGGTGATGCTGTGTGTTCCATGGTCGAATCGT AAAATCGTAAAATAACTGGACGTCAAGCAACAATCGAGTACCCAGTTATT CCGTATTCCTTATATGTATGTGCTTTCGTTGTTGGGAGTCGAGTCGACAA CATGGCACATGGCACCGAGGTCTGGCGCCTGAAATACCCCTGTGTGCGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCATTTATTAGCATCCACCG CGCTAACCGGTTGGGTGTGTGTGTGTGTGATGGTCCTGCAGGACGAACCA GTTGCTCCTCAGGGAAGCAATCGCGGCCATGGCAAGAGGAGACAGGGTGG CCTTCCAGGATAAAAAAAGTCCAAGCTGCAGGTGAAGGTGCCGGGGGAAA CTATCTCACGTCCTCCAACTTGGTGTGCTCAGTTTATGACGCCTATGTAG GGAAGATGAAGTAACTGAGCGAAAAAGACGGTTTTGGATGTTAGATTGAG CTGCGCAACTTGATGGCGCAAGATGGCTGAGGAGAGGATAGATGAGTGCA GCGAATCGGCCACACCTTGCATCAGATCTGATTGAAGCCGTGCTCGTGCA GGACGCGAGAGACCTGTGCCACCTGATCGCCGGCAAGAAGGGCAGGGTCC GTAGCAAAGAGCTCAGGGAGATCGGCTCGATTTCGGCGCTAAGGGCAATG CTCGAGGAGGCGGAGGACGATCACCTGAAGACCTGGATCCCACTTGTGCG TGTCTTCCAAATTTTGCTTGTAATAACAAATAAAGGCGCGGGTGACGGAT TTACAACCATCCTCGCACTGCTGCTTTTGGATCAAATGAAAAGAATGGAT TCGTCGCGGCTAAGAATAACCACACCGCGTTTCTTGCTTTGCAAGAAAAT AATTTTCCGAGAAAAAAACTGTCTCTCTCGCGTTTGCCTAGTCGTGCTAC CGCTTAGGGCCTGTATTAACATGTTCCCAAAATTAAAATTGGAAGTTAAA ATCGAGCTGTGATTGGCCCAGGAGGCCTCCAGGAGGCGTGAACGTCATAA TCATGGAACCACACATTTTAATTTTATTTTTAGAAAAAAAGTCCCAAAAG ACTTTTTGTCTTGAAATTAAAATTAAAGTCAAACGCCTACCACTTGTGTG AAACCTGGGGACCCGGTCTCGACACCTCAAGCACTCGGCGGCGCCCCCTG GAACCCAAAATCGCGAGAACCAGGCCCGGCACGCCTCCTTATTTGAATTT GAATTTGAATTTCGGGAGCGTCCGTTGATTCAGGCCCTTACTGCTGTGCA TTGGTCCCAAGACACGAATTGGCATGCATGCCTATCTCGCCACTTGTTTA TCGTGGAACACCCGTTGCCATCACTGGGGTGTTCGACTCAGCGTAACGTA GCACACACCCGGAGCTTGCCGGGGACCTTTGTGTTGACAGCGTTTGAGCA CGTCACTGGACTGTCGAGTAGTAGAGAAAGGGCGTAAAGTCGACCAAGGG CACTGTGCGTTTGCAAGTCACATATCCGTACCGGGCTGCGTGTTTATTTT CACATTCCATACCGTGAGACTGAAACGTGAGAATAATCCTGCAACCAGGT CGAAAACGTCGTTCAACAGAAGAATAGATGGACAGTGCCAGGGACGGTTC CATTTCAGAGGGGTTTTTTTTTCGTGCCCAGTCAGTTTCTTGTTGCTGGC GCGAGACGACCGCACCGCTTTTTTATTTTATTTTTCATCTTTACGTGCTT GCCTCACACGCCAAAACGGTACGGCAGGCGATAGAAGCATCTGCGATATC TACGACATCTAAGCGCCTGTCTTTTTGTTCGGCTGTTTTCCCCCTCATGT TCAATTTAGAGTAAGTAGTCTACTCGTCGTACGTATGTATGTTCGACGCC TTTTGTGGTGGTTAGGAACGCGTGGATCATACCCCCCCCCCCTTTTTTTG TCCATTGCCTTACCATACCCCCTCCCCTTTTTTTTGTTCATTGTCTTACC ATACCCCCCCCCTCCTTTTTTTGTCCATTGCCTTTACTTCTCTCTGTCCG TCCGTTTGATTGGCGCCGACCCTAACCGAACGCAGCTGAACATGGTAGAT GACTTCATGGCAAACGGCAAGACCCCGGAGGAAATCTTGTCGGACCTGGA TCGTGTCAGTGAATGCGCAGTCGACAAAAGTAGCACGGGCCCGCTCATGA TCTTGACCACCGCTCACAGTGCCAAGGTACGCGGTCAACCGATGCCGCTC CGTCTCTCCCGATTCCACATGTACTTGACAGTTACATGGCAACATCAACA TCAACAGCAACAGCAGCTTCCCAAGGAGCCACGCTGCTCTCCTCCACGCA AAGCAGAGTACAGCAAAGGGCGGCAATAGGGTCACCGTCTGAAAGCGGGG TGTTGCTCTGTTTTTGTCCACTGTTTGGAACCTCAACCTCGATGAGACCG ATTCTTATGGTGCGGGAATAAATGGGTTTGTAATGAGCTTTGGATTCTTT GAATGACATTATTGTATTGGTCATAAACCATACCTCACTACAAACCCATT TATTTCCGCCCCATAAGATACGGTCTGAGACCCACAGGTAGTGTGAGGCC TATTTGCACGTCGTGGTCGTCGTGCTTTCTTGTTCGGGGGAGGGGGCTGA AAGCGGTCTATCCCCCGCTGCCACTTTTTGGGAGATGATTTCGCGCGTGT TTCAAAACCACTTGTCCTGTGTCTGCTTTTCTCTTTTGTGCTTCACTTGT GCAATAAATGCGATAACTCACCTCCCTTTACGGTGGAAAATGGAAATCCG TCCCCCAAAGACGGGGACGCGCGTGGTATGTAGTCAGCGCCGTTTTTTCT TTATTCTCCCATGGAAGAGTTTTTGTTGCCTGTTTTGCTTCTAACACCCG TCCGCGTCTGATGCGTTTTTTTTTGCATTTTTTTGCAGGGGCTGGATTGG GACACGGTTGTTCTTGGCGACGACTTTGACTTCCATCCGCTTGATGGAAA CACAAGGCTGCAGCTCAACAACAATGAAAAAGAAGCCGTAAGTGAACGTA GTTGAGAGGGCATGAAACAGAAGTTGAACGTGGTGATGGACAAAGGGGGT TGACGAAACACAGGCGGCACTCTGAATGACAGTTGTGGCTCACCCGAAGA TAAAATAGGAGTATGAGGTAGGACGTCATCTCCCATCACCCTCTGTCAAC GATCGATCTGAAGGCGTTTGATTTTGACTCAAGATGCGCCCGCCAGAGTG AATGCCTGCAGCGGCCGACATGTCTATCCCTCTCATCGCGAATTTTCTTC CTCGGAGCGTGATGGGAGAGGGACTGAGACGATGCTGGTGCGTGTCAGGA AACAAGTACTCCGAGTATACGGGAAAAAAAAACGAATACACGATAACAAA ACCCTGGACTCGGCCTCCTATTGGAGGCCGCTTCTCGGAGGTATGTAGGC TGAAAATCTTCTTGCTACGCTACGCAAGCTTGGCTTGATTCGCACTCCAA GATATTCTGTCGTTTTGCAAGGTGGTATTGAATTGGGATTGTGAACAACA GCTTTGAAGGTTTCTGTGTCTTTTTTTGTTTGTTTGTTTGGTCGTTCGTG AAAAGAGTCAGCGCAACAAACACCGCAGGAGGAGACTCGATCTATGCTAT TTTCTGTCGGAGTTATGGCAAACCGGGCAGGAGAGCCAGCTCACGTTCGG GCGTCGCATCTCCACTGTGGAAGAAGCCCGCTTCCTTCCTTCCGTGTGAC GCCATCAAATCAATTGCATCTATTGCATCAACCTTTTCCCGCAGAGCCCT CCGTTTCGACTTCCGGGAGTACACCATCCCCGCACGTTAAGCCGTATGCC GGTGAACTCCAGCAATTAGATAGACAGCATGAGAAAAACCCCGCGCAATC GGTTGCTGCTGAAGCATCAAACGTGATGTTGTAAAAAAAAAAAAAACATG GACAAGAAAAAAGCACTAGACTTTACGCCGCAAATGTAAGCACTGTAAGG ATAATTAATGTATTATGAGTATTAGACTATGGCAAGAAATCCGAGTCCGA GGGTGGATGACACGATGACAGTCGCCGCAGGGCAAGACATCGTTCTCCCC GGTCCGTGTCTGATGTTCCACTTGAACCATCTACCGGTTTGATGAATTCA AACCCAGACCCAGGCTGAGCAAATAGGCGATCTATGGACACACCAATGAA CTGGATGACTTTTCCCGACGACCGAACAAGACTCCAATAGAAACTTTGGT GACCGGCAACGGACGAGCGGGTCACTATGGCCGTGAGAATCCATACTTGT GAGATGGACTGCCTTGGTACGCAGTGCATGACCGCAATCTTCACTCTTCC TCTGCCATCCACGCGGAGATACTCCGAATAATGTTGAGGAGAGCACGCAG GTCACTCAATGTTCTGTTTGCGTCACCCCCGTCAGAGGCACATGAGCGCG TACTTCTCGTCGTGTTCCGTATTTACCCTTATTTCGTCCATTGTGGCCAC CGTCCCGCATCATTATTTATTCACAGATGGATCTCCGGTCCTAATGCGCG ACAGATGCTATTTGAATTTTTCCGTTACCAAGGGCATCTAACTCTAGTTT ATGCAGGTAGGAAATGTAGTGGAAAGAGCCACGATACATGCGTTTGAAAT TGGTCGCTGAGGGAGATAGGAGCCGGCAAGGCTTGACACACGTCCCTCTT GGTAGTTCGGTTCCCACCACGCTGTGATGCACATACGTAAGCATATTAAC GAGCGACCTCTCTGAAGTGCAGCGTCTGCTCGTGTCGCGTGACCGACAAA CTCACTCCGGTTTGGTTTCAATTTACATGAATTTACATAAGAATCTCTGC TCGTGTCGCGTGACCGACAAACTCACTCCGGTTTGGTTTTCATTTACATG AATTTACATGAGAATCGCTCGCGCCTCTCTCGCCGGCGGGGTAGATTGTT GTGATTTTACTTGCATTGTTTTTCCTAAAAATACGAAACAACTCCATCTT CATCTGTGGATAAGAGTCCAAGAAGGGTTAGCAGTGCATTCATTGAGCTC GCGGTGTAGATTGTTTTGAAATGGCGACACACACACGAATGGCAGCCGAA AGAATTTTATCCGGCAAACGACTATGAATACTACGAAGCAAGATAGTATA ATTCCACCGATCCCGTGGGTATAGCATCGGCGACCCACGGATCGGGTTCG GGTTTACATCGCATCGATTTTTTCCCAGCGGAGTTGTACAGCATCACGCC CCCTCCTCCTCCTCCTCCTTCCATTTCCCAAACAACATATGCACACCCTC ATGCAGGCCAACCTCCTGTACGTGGCGGTTACAAGGGCGAAGCGGCGGCT TTTCCTCAACCCCACCCTTGCCAACCAGCTGCGCGCCTACGGCATGTGGG ACAGCCTCTCGCTCCAGGGCACCACCGCGTCAGATCCGCTCCACCCTGTC CCCTGCTGCAGCTACGGCTGCGACTGTTCCGACGCTCACGGGGTGATGGC GACCGCCGCCGACCCCGTTGGCGTTAACGACGGCGACATCTCCCGTAGAC ATGGTTGTAGATTTTACTATGTGGGCAGCGGATCCGGGGCCGCCCTCTGC CGGGAGTGCGTGGAGGGGCATGCGGCGAGGGGGGAGGGAGTGGAAGAAGA GGAAGACAGGGGGCTTCCCGTACGCTTCGCAATTGTTGCCTCCATCAAGA ACGGCCTGAACCCTGGCGTTCTGTGTCTCTCCCGAGCATCGTGCGAGGAG AGAGAGAGAGTCAGATCACGTGGAAAGGCTGTGCGCGTGGTTTCAAGTGA AATAAGATAGAGAGTGGTCTTGTCGGTATTTCGTCTTCTCTTTTTGTCGG TATTCCGTCTTCTCTTTTTGTCGGTATTTCGTCTTCACTTTTTGTCGGTA TTTCGTCTTCTCTATTTTCAGAGTGCGAGAGGCCCGCTATTCGGTTGAGG AAAGCTATTCGGTTGAGGGGGGAAGCTTCGGGTGAATCTCCGCCGAGTAC ACTACTGGCCGTGTCCGAGGGAGTTCTCCCGTATCGTTTGTATTTATCTA ACCTAGAGACAGACGGGCAGATAGACAACAAGGTTTGCTCCGAAATGGAA ATTGTATTGTACACGATTATTTTTTTTTGTAAGCAGAAAATCCCATCGAA CTTGAACCGGGAGATGGACACATGCTGAGCCGAGGTGGGAAGAGCAACAT ATTCCTCGGGGCTCAAATATTTGTCGCTGCTGAGTGGCCTGGTGCGGCAT CAAGTGAATGGAGTGTAGGGTTTGTTGGGCTTATTGATGTGCTCCTACCC AACGCTCCCGAGCTGAAGGCTATGCTCGCGGTGATGTGCACGCCCGTATC TTCTGGGCGCTGCCGAGGTTAATCCCCGAAATGCACAGATAATTCTTGGT CGTAATTGCAAAGGTCGTTCCCAGAAGGAGAGAGGGGCGAATTAGGGGAT TTAACTGGTTTTGGCCTGTTTCATTTCTCGCGATTGATTCATTGCGAACA CTTATCGGGGGTTAATTTGTAGTATTTTAGTGATGTCCTTGTCATATCTG CATCGAAACATGTATGAAACTGGTTTGTTTGCTCCTTTGGTCTATATATT GTTCTCGTGTTCTCGTATGATTCGTAGTATCGACGCCAGTCTACTGCAAA AGGCACGACTCTGGTATCATAAGATCGGGCAGAAAATGCCTCTCATGGCT GTGTTCTTTGTAGGTAAATTTTGCCGCGCTCCATCAAATATATATGGAAC CGATCGGTGTGCTTGGGCCCCCTTTCTGTTGATGGGAGATTTCTGTAGTG ATATTTATACAGGAAATAAATGTGGCCGCCTTACAACTTTACAGTAGCCA GCGCCGACCCGCGGGAGAGAGAGTGGTCGGTGAAGCTCGTGTTGCCACGG AAATAGCAATTGGTGGGATACGTAAATACACTATCTACATCGAGGTTAAC GCAACGTGCAAGGATTAAGAGCATCGACCCCGAACGATCCTTCGCGAGGC CGCTTTTTGTTGAACAGCGGCACAGCGTGTGTGCTGCTTTAGACAGTAAT GTGGACTATATATACTTCAAATTATTGTGGATTAGTTAGCTGGCGACCAC GTAATCTCGCTTTCCGTGCCTTGAAAGACTACTGGATAGAGGTCAGCGCG GCTTTTTTTGCCGTGAACACCCCAACGAAGGACAAATGTAATAAAGCGGT GTTTGGCGCTGTTGGGTCGTCGCCCCTTGATTCTGTTTCGTTTCCTGCCG CCTCGTAGAGGGAGGGGGCATGCTTGTGGCCGCTTTGGCCGCTAGACTCG CGGTTTAATCCCCC
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1011:58690..71103-

>mRNA_P-lacustris_contig1011.214.1 ID=mRNA_P-lacustris_contig1011.214.1|Name=mRNA_P-lacustris_contig1011.214.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=3792bp|location=Sequence derived from alignment at P-lacustris_contig1011:58690..71103- (Pleurocladia lacustris SAG_25_93)
ATGGTCGACGAGTCTGCGCTTACCACCGAGCAGCGAGAGGTGGTGAACAC
TCGAATGGAAGTCGGGGACATCCTGAAGGTTGTGGCCTATGCCGGCACAG
GGAAGACGCATACTCTGAGGGCGTTTGCCCAGACACACCCCGACCTCAAG
ATCCTGTATCTCGTGATGGTCGACGAGTCTGCGCTTACCACCGAGCAGCG
AGAGGTGGTGAACACTCGAATGGAAGTCGGGGACATCCTGAAGGTTGTGG
CCTATGCCGGCACAGGGAAGACGCATACTCTGAGGGCGTTTGCCCAGACA
CACCCCGACCTCAAGATCCTGTATCTCGTGTTCACCAGGTCCGTGGCCAA
TGAAGCCGAGGAAAAATTCCCGCGTGACAACTCGACCTGCTTGTCATTTA
GCCAGTTGGCTTGGCAGAAGATGGATCTGCCAACTGGACAAAAGTTGACG
CACAACCTCAAGACGGCAATACATGCCATTCTTAAGAGGCTGGACAGAAC
TTTCACCAGGTCCGTGGCCAATGAAGCCGAGGAAAAATTCCCGCGTGACA
ACTCGACCTGCTTGTCATTTAGCCAGTTGGCTTGGCAGAAGATGGATCTG
CCAACTGGACAAAAGTTGACGCACAACCTCAAGACGGCAATACATGCCAT
TCTTAAGAGGCTGGACAGAACTACGCCGTACACGCATGCCATCATCGTCG
CTAACGCTATTGGGGCCTTCTGCCGCTCCATGGACACCGAGATCAACGCC
GGACACGTGAGGATTCCTTGGCGGGTCTCACCGTCGCCATCTCGGAGTGG
TCATGCAAAGGCGCCCAAACCGCCGCCTCCAGTACAGTGGGTTCTTGAAA
CCGCAAGGGCGATTTGGGTGAGGATGCGGATACCGCGCTCTTCCGAGAAC
GAGAGATGCGTGAGCGCGAGAGAGCGGATCCATCCGACGCATGACAGTAT
CATGAAGGAGTATCAGCTTTCTAAACCGGACTTGAGCGTCAACTGGGACA
CGCCGTACACGCATGCCATCATCGTCGCTAACGCTATTGGGGCCTTCTGC
CGCTCCATGGACACCGAGATCAACGCCGGACACGTGAGGATTCCTTGGCG
GGTCTCACCGTCGCCATCTCGGAGTGGTCATGCAAAGGCGCCCAAACCGC
CGCCTCCAGTACAGTGGGTTCTTGAAACCGCAAGGGCGATTTGGGTGAGG
ATGCGGATACCGCGCTCTTCCGAGAACGAGAGATGCGTGAGCGCGAGAGA
GCGGATCCATCCGACGCATGACAGTATCATGAAGGAGTATCAGCTTTCTA
AACCGGACTTGAGCGTCAACTGGGACGCGATCTACAGCTGGCGTGGGGCG
AGGGACTACCTTAAGAGCGCAAAGAGCAACAAGACGCTATATCTCACCCA
GGCGATCTACAGCTGGCGTGGGGCGAGGGACTACCTTAAGAGCGCAAAGA
GCAACAAGACGCTATATCTCACCCAGGTCTTTCGGTTCGGCAACTCCATC
GCCAGCGTGGCGAACTCGGTGCTGCTCAGGCTTATCGGGGTGAGGCGCCC
GCTGTTGGGAAGCTTGGCGTTATCGAACGGTCCGGCCAAGGTCTTTCGGT
TCGGCAACTCCATCGCCAGCGTGGCGAACTCGGTGCTGCTCAGGCTTATC
GGGGTGAGGCGCCCGCTGTTGGGAAGCTTGGCGTTATCGAACGGTCCGGC
CAAGGTTATATTCGAGCGCGAGAGGCACGAGTGGCTTCAGCTGGACGGCG
AGTCTCAAGGACGCTACGTGTTATATTCGAGCGCGAGAGGCACGAGTGGC
TTCAGCTGGACGGCGAGTCTCAAGGACGCTACGTGACGAACCAGTTGCTC
CTCAGGGAAGCAATCGCGGCCATGGCAAGAGGAGACAGGGTGGCCTTCCA
GGATAAAAAAAGACGAACCAGTTGCTCCTCAGGGAAGCAATCGCGGCCAT
GGCAAGAGGAGACAGGGTGGCCTTCCAGGATAAAAAAACCGTGCTCGTGC
AGGACGCGAGAGACCTGTGCCACCTGATCGCCGGCAAGAAGGGCAGGGTC
CGTAGCAAAGAGCTCAGGGAGATCGGCTCGATTTCGGCGCTAAGGGCAAT
GCTCGAGGAGGCGGAGGACGATCACCTGAAGACCTGGATCCCACTTCCGT
GCTCGTGCAGGACGCGAGAGACCTGTGCCACCTGATCGCCGGCAAGAAGG
GCAGGGTCCGTAGCAAAGAGCTCAGGGAGATCGGCTCGATTTCGGCGCTA
AGGGCAATGCTCGAGGAGGCGGAGGACGATCACCTGAAGACCTGGATCCC
ACTTCTGAACATGGTAGATGACTTCATGGCAAACGGCAAGACCCCGGAGG
AAATCTTGTCGGACCTGGATCGTGTCAGTGAATGCGCAGTCGACAAAAGT
AGCACGGGCCCGCTCATGATCTTGACCACCGCTCACAGTGCCAAGCTGAA
CATGGTAGATGACTTCATGGCAAACGGCAAGACCCCGGAGGAAATCTTGT
CGGACCTGGATCGTGTCAGTGAATGCGCAGTCGACAAAAGTAGCACGGGC
CCGCTCATGATCTTGACCACCGCTCACAGTGCCAAGGGGCTGGATTGGGA
CACGGTTGTTCTTGGCGACGACTTTGACTTCCATCCGCTTGATGGAAACA
CAAGGCTGCAGCTCAACAACAATGAAAAAGAAGCCGGGCTGGATTGGGAC
ACGGTTGTTCTTGGCGACGACTTTGACTTCCATCCGCTTGATGGAAACAC
AAGGCTGCAGCTCAACAACAATGAAAAAGAAGCCGCCAACCTCCTGTACG
TGGCGGTTACAAGGGCGAAGCGGCGGCTTTTCCTCAACCCCACCCTTGCC
AACCAGCTGCGCGCCTACGGCATGTGGGACAGCCTCTCGCTCCAGGGCAC
CACCGCGTCAGATCCGCTCCACCCTGTCCCCTGCTGCAGCTACGGCTGCG
ACTGTTCCGACGCTCACGGGGTGATGGCGACCGCCGCCGACCCCGTTGGC
GTTAACGACGGCGACATCTCCCGTAGACATGGTTGTAGATTTTACTATGT
GGGCAGCGGATCCGGGGCCGCCCTCTGCCGGGAGTGCGTGGAGGGGCATG
CGGCGAGGGGGGAGGGAGTGGAAGAAGAGGAAGACAGGGGGCTTCCCGTA
CGCTTCGCAATTGTTGCCTCCATCAAGAACGGCCTGAACCCTGGCGTTCT
GTGTCTCTCCCGAGCATCGTGCGAGGAGAGAGAGAGAGTCAGATCACGTG
GAAAGGCTGTGCGCGTGGTTTCAAGTGAAATAAGATAGGCCAACCTCCTG
TACGTGGCGGTTACAAGGGCGAAGCGGCGGCTTTTCCTCAACCCCACCCT
TGCCAACCAGCTGCGCGCCTACGGCATGTGGGACAGCCTCTCGCTCCAGG
GCACCACCGCGTCAGATCCGCTCCACCCTGTCCCCTGCTGCAGCTACGGC
TGCGACTGTTCCGACGCTCACGGGGTGATGGCGACCGCCGCCGACCCCGT
TGGCGTTAACGACGGCGACATCTCCCGTAGACATGGTTGTAGATTTTACT
ATGTGGGCAGCGGATCCGGGGCCGCCCTCTGCCGGGAGTGCGTGGAGGGG
CATGCGGCGAGGGGGGAGGGAGTGGAAGAAGAGGAAGACAGGGGGCTTCC
CGTACGCTTCGCAATTGTTGCCTCCATCAAGAACGGCCTGAACCCTGGCG
TTCTGTGTCTCTCCCGAGCATCGTGCGAGGAGAGAGAGAGAGTCAGATCA
CGTGGAAAGGCTGTGCGCGTGGTTTCAAGTGAAATAAGATAG
back to top