mRNA_P-lacustris_contig101.186.1 (mRNA) Pleurocladia lacustris SAG_25_93
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-lacustris_contig101.186.1 vs. uniprot
Match: D7G1U0_ECTSI (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1U0_ECTSI) HSP 1 Score: 486 bits (1250), Expect = 2.640e-163 Identity = 323/395 (81.77%), Postives = 336/395 (85.06%), Query Frame = 1 Query: 307 MASKIEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYINRGSFTSKVGLGTDVPSKIVRLPLAAYGGAVICQRGAFLAGSHTIDIQTEFTKMMAGFFGGEGFVLQRLTGIGDAFVKASGPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGGRGGMGMIPXXXXXXXXXXGEGGEEAGADXXXXXXXXXXXXXXXXXXXXXXXXGGTVNASDQGTHSDTSSQNDLFGDAVPPSSPASADFSDGGSEGGFADPDAGYSEPPPESGETAWSESSFGAEDGVDAPXXXXXXXXXXXXXXXXXXXGGGVIGTLKKIYTLFGGDD 1491
MASK+EGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDY+NRG + KVGLGTDVPSKIVRLPLAAYGG VICQRGAFLAGSHTIDIQTEFTKMMAGFFGGEGFVLQRLTG GDAFVKASGPLIQREL EGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKL GPGTVFLQGLPFDRMVDQIARRIPGG RGG XXXXXXXXX EGGE+AG +XXXXXXXXXXXXXXXXXXXXXXXX T S+ S NDLFGDA PP+S AS F +G GF + DA SEPPPESGET W+ F ED XXXXXXXXXXXXXXXXX GGG++GTLK +YTLF DD
Sbjct: 1 MASKVEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYVNRGDASGKVGLGTDVPSKIVRLPLAAYGGEVICQRGAFLAGSHTIDIQTEFTKMMAGFFGGEGFVLQRLTGKGDAFVKASGPLIQRELSEGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLAGPGTVFLQGLPFDRMVDQIARRIPGG-RGGXXXXXXXXXXXXXX--EGGEDAGGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---TDSEAGSSNDLFGDAAPPTSSASTGFPEGEPADGFNEADAXXSEPPPESGETTWNRGGFDGEDAA-GDGXXXXXXXXXXXXXXXXXTGGGIVGTLKSLYTLFRDDD 388
BLAST of mRNA_P-lacustris_contig101.186.1 vs. uniprot
Match: A0A7S2WLF3_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WLF3_9STRA) HSP 1 Score: 298 bits (763), Expect = 8.700e-92 Identity = 151/275 (54.91%), Postives = 200/275 (72.73%), Query Frame = 1 Query: 256 VATVQDHLALAKPLDFDMASKIEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYINRGSFTSKVGLGTDVPSKIVRLPLAAYGGAVICQRGAFLAGSHTIDIQTEFTKMMA-GFFGGEGFVLQRLTGIGDAFVKASGPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGGRGGMGMIPXXXXXXXXXXGE--GGEEAGAD 1071
V D + +DF+ AS+IEG +SQ+VT LEPGQV+RAE+G +++M DG+EM+T+TGGG + F+R +TGQN+F++DY +G V LGTD PSKI+RL L + G ++CQ+GA L SHT+DI+TEFTK + GFFGGEGFVLQ L G GD FVKA G +I++EL GE LR+SSGS+VAFS +V+YD+Q +PGFKNV+FGGEGLF+T LTGPGT++LQG+P RM+ +IARR+P GG G+G+ GE GG + G D
Sbjct: 36 VVVSSDGVVATHAIDFNTASRIEGSDSQIVTVRLEPGQVLRAESGGMMYMTDGVEMNTSTGGGVGAGFKRFLTGQNVFISDYTYKGDRFGIVALGTDFPSKIMRLSLPEWDGKIVCQKGALLCASHTVDIETEFTKKFSTGFFGGEGFVLQALLGEGDVFVKAGGSIIKKELNPGEQLRISSGSLVAFSQTVEYDIQMMPGFKNVLFGGEGLFVTTLTGPGTIWLQGMPPQRMISEIARRVPSGG--GLGLAIPIPGMGSGGSGEEGGGNDDGND 308
BLAST of mRNA_P-lacustris_contig101.186.1 vs. uniprot
Match: A0A4D9D418_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D418_9STRA) HSP 1 Score: 300 bits (767), Expect = 1.640e-91 Identity = 149/245 (60.82%), Postives = 196/245 (80.00%), Query Frame = 1 Query: 268 QDHLALAKPLDFDMASKIEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYINRGSFTSK--VGLGTDVPSKIVRLPLAAYGGAVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGIGDAFVKASGPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGGRG 993
+D ALAKP+DFD+AS++EG E+Q+V +LEPGQV+RAE G+L++M DG+E++T+ GGG S+ +R +TG+NMF++D+ G S V LGT+ PSKI+R+ LA YGG++ICQ+GAFL G+H ++ EFT+ +GFFGGEGFVLQRLTG GDAF+KA G LI+REL EGETLRV+SGS+V F+ SVQYDV+ + G KNV+FGGEGLF+T LTGPG+VFLQ +PFDR+V IA R+P GG G
Sbjct: 17 EDQTALAKPIDFDVASRVEGAETQIVVVDLEPGQVLRAETGSLLYMTDGVELETSLGGGLSAGLKRYMTGENMFISDFKYHGPEGSSGTVALGTEFPSKIIRVTLADYGGSLICQKGAFLCGTHLTGMEMEFTRSFKSGFFGGEGFVLQRLTGGGDAFIKAGGALIRRELSEGETLRVTSGSLVGFAPSVQYDVEMLKGVKNVMFGGEGLFVTTLTGPGSVFLQSMPFDRVVASIASRVPRGGLG 261
BLAST of mRNA_P-lacustris_contig101.186.1 vs. uniprot
Match: W7T4F9_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T4F9_9STRA) HSP 1 Score: 299 bits (765), Expect = 6.230e-91 Identity = 149/245 (60.82%), Postives = 194/245 (79.18%), Query Frame = 1 Query: 268 QDHLALAKPLDFDMASKIEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYINRGSFTSK--VGLGTDVPSKIVRLPLAAYGGAVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGIGDAFVKASGPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGGRG 993
+D ALAKP+DFD+AS++EG E+Q+V +LEPGQV+RAE G+L++M DG+E++T+ GGG S+ +R +TG+NMF++D+ G S V LGT+ PSKI+R+ LA YGG++ICQ+GAFL G+H ++ EFT+ GFFGGEGFVLQRLTG GDAF+KA G LI+REL EGETLRV+SGS+V F+ SVQYDV+ + G KNV+FGGEGLF+T LTGPG VFLQ +PFDR+V IA R+P GG G
Sbjct: 74 EDQTALAKPIDFDVASRVEGAETQIVVVDLEPGQVLRAETGSLLYMTDGVELETSLGGGLSAGLKRYMTGENMFISDFKYHGPEGSSGTVALGTEFPSKIIRVTLADYGGSLICQKGAFLCGTHLTGMEMEFTRSFKGGFFGGEGFVLQRLTGGGDAFIKAGGALIRRELSEGETLRVTSGSLVGFAPSVQYDVEMLKGVKNVMFGGEGLFVTTLTGPGAVFLQSMPFDRVVASIASRVPRGGLG 318
BLAST of mRNA_P-lacustris_contig101.186.1 vs. uniprot
Match: A0A7S0C9P2_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=6 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C9P2_9STRA) HSP 1 Score: 294 bits (752), Expect = 2.730e-90 Identity = 154/263 (58.56%), Postives = 196/263 (74.52%), Query Frame = 1 Query: 208 SDSSSDVAAAGGSHAEVATVQDHLALAKPLDFDMASKIEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYINRGSFTSK--VGLGTDVPSKIVRLPLAAYGGAVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGIGDAFVKASGPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGG 987
S SSS GG AT D + + P+DFD++SKIEG ESQ+VT ELEP QV+RAE+G +++M +G+ M+T TGGG S+ F+R++TGQN F++DY G +K V LGTD PSKI+RL + YGG ++CQ+GA L SHTI+I+ EF K M AGFFGGEGFVLQ LTG GD FVKA G LI+R+L +GE LR+SSG +V FS V+YD+Q +PG KNV+FGGEGLF+T LTGPGTV+LQG P RM+ +IA R+PGGG
Sbjct: 9 SSSSSLTKGEGGEITNAATSADGV-VGLPIDFDVSSKIEGNESQIVTIELEPNQVLRAESGAMMYMTEGVTMETTTGGGMSAGFKRMMTGQNAFISDYRYDGEPGTKGLVALGTDFPSKIIRLDVKDYGGKIVCQKGALLCASHTINIEMEFAKKMTAGFFGGEGFVLQSLTGDGDVFVKAGGTLIRRDLGDGEILRISSGCLVGFSNGVEYDIQMMPGIKNVMFGGEGLFVTTLTGPGTVWLQGQPPSRMISEIASRVPGGG 270
BLAST of mRNA_P-lacustris_contig101.186.1 vs. uniprot
Match: A0A7S4QQY9_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QQY9_9STRA) HSP 1 Score: 295 bits (756), Expect = 4.860e-90 Identity = 151/253 (59.68%), Postives = 191/253 (75.49%), Query Frame = 1 Query: 262 TVQDHLALAKPLDFDMASKIEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYINRGSFTSK--VGLGTDVPSKIVRLPLAAYGGAVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGIGDAFVKASGPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGGRGGMGMIP 1011
T D + P++FD+ASKIEG+ESQ+VT +EPGQV+RAE+G L++M DGIEM+T +GGG S+ F+R++TGQN+F++DY G ++ V LGTD PSKI+RL YGG ++CQ+GA L SHTIDI+ EF K AGFFGGEGFVLQ LTG GD FVKA G +I++EL GE LR+SSG +V FS V +DVQ +PGFKNV+FGGEGLF+T LTGPGTV+LQG P RM+ +IARR+P GG G IP
Sbjct: 95 TSSDGVVATHPINFDIASKIEGKESQIVTVAIEPGQVLRAESGALMYMTDGIEMNTTSGGGMSAGFKRLLTGQNVFISDYTYTGESGTRGLVALGTDFPSKIIRLNPNQYGGKIVCQKGALLCASHTIDIEMEFAKKFTAGFFGGEGFVLQALTGDGDVFVKAGGTMIRKELEAGEQLRISSGCLVCFSQGVDFDVQMMPGFKNVLFGGEGLFVTTLTGPGTVWLQGQPPQRMISEIARRVPSGGIGLAVPIP 347
BLAST of mRNA_P-lacustris_contig101.186.1 vs. uniprot
Match: A0A1Z5KFL0_FISSO (Altered inheritance of mitochondria protein 24, mitochondrial n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KFL0_FISSO) HSP 1 Score: 293 bits (749), Expect = 8.360e-90 Identity = 143/241 (59.34%), Postives = 187/241 (77.59%), Query Frame = 1 Query: 289 KPLDFDMASKIEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYINRGSFTSKVGLGTDVPSKIVRLPLAAYGGAVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGIGDAFVKASGPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGGRGGMGMI 1008
+P+DFD+A+KIEG ESQ+VT EL P QV+RAE+G ++++ +G+EM+T TGGG S+ FRR++TGQN F++DY G+ +V LGTD PSKI+RL + YGG ++CQ+GA L SHTID+Q EFTK +GFFGGEGF+LQ LTG GD F+KA G LI+R+LR GE LR+SSG +VAF++ + YDVQ + GF NV GGEGLFIT L GPGTV+LQG P RM+ +IARR+P GG G+G +
Sbjct: 46 EPIDFDLAAKIEGNESQIVTIELRPNQVLRAESGAMMYLTEGVEMNTTTGGGLSAGFRRMMTGQNFFISDYTYTGNTVGRVALGTDFPSKILRLNVPEYGGKLVCQKGALLCASHTIDVQMEFTKSFTSGFFGGEGFILQALTGEGDVFLKAGGTLIRRDLRAGEELRISSGCLVAFTSQIDYDVQMVKGFANVFAGGEGLFITTLKGPGTVWLQGQPPQRMISEIARRVPAGG--GLGFM 284
BLAST of mRNA_P-lacustris_contig101.186.1 vs. uniprot
Match: A0A7S4J9C2_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J9C2_9STRA) HSP 1 Score: 293 bits (750), Expect = 4.360e-89 Identity = 151/268 (56.34%), Postives = 199/268 (74.25%), Query Frame = 1 Query: 211 DSSSDVAAAGGSHAEVATVQDHLALAKPLDFDMASKIEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYINRGS--FTSKVGLGTDVPSKIVRLPLAAYGGAVICQRGAFLAGSHTIDIQTEFTKMM-AGFFGGEGFVLQRLTGIGDAFVKASGPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGGRGGMGM 1005
DS + VA G + E A +A P+DFD++SK+EG+ESQ+VT ++PGQ++RAE+G +++M G+ M+T TGGG S+ F+R++TGQN+F++DY G T V LGTD PSKI+RL + YGG ++ Q+GA L +HTIDI+ EF K AGFFGGEGFVLQ LTG GD F+KA G LI+REL GE LR+SSG +VAFS V +D+QT+PGFKNV+FGGEGLF+T LTGPGTV+LQG P RM+ +IARR+P GG G+G+
Sbjct: 78 DSDTPVAVGGENLPEGAKASSDGVVAVPIDFDVSSKVEGKESQIVTVAIKPGQILRAESGAMMYMTQGVSMNTTTGGGLSAGFKRMLTGQNVFISDYSYEGEPGTTGLVALGTDFPSKIIRLNVDQYGGKIVAQKGALLCATHTIDIEMEFAKKFSAGFFGGEGFVLQALTGDGDVFLKAGGTLIRRELSAGEQLRISSGCLVAFSDGVDFDIQTMPGFKNVMFGGEGLFVTTLTGPGTVWLQGQPPQRMISEIARRVPSGG--GIGL 343
BLAST of mRNA_P-lacustris_contig101.186.1 vs. uniprot
Match: A0A7S2GIV3_9STRA (Altered inheritance of mitochondria protein 24, mitochondrial (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GIV3_9STRA) HSP 1 Score: 291 bits (744), Expect = 5.380e-89 Identity = 152/257 (59.14%), Postives = 196/257 (76.26%), Query Frame = 1 Query: 253 EVATVQDHL-ALAKPLDFDMASKIEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYINRGSFTSKVGLGTDVPSKIVRLPLAAYGGAVICQRGAFLAGSHTIDIQTEFTKMMA-GFFGGEGFVLQRLTGIGDAFVKASGPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGG-----RGGMG 1002
+VAT H + KP++FD A ++EG ++Q+V EL PGQ +RAE+GNL++M +G+EM+T GG SS F R+++G MF++++ GS + V LGTDVPSKI+R+ L YGG +ICQ+GAFLAGS I+I+ FTK GFFGGEGFVLQ+L+G GDA+VKA+G L+ ++L EGETLRV++GS+VAF S+ YDVQ + G KNVVFGGEGLFIT LTGPGTV+LQG+ FDRMVDQIARRIP GG GGMG
Sbjct: 52 KVATTSPHADVVRKPINFDAAGRVEGGDAQIVHVELLPGQTLRAESGNLIYMTEGVEMETVALGGVSSGFARLLSGGTMFLSNFEYTGSGSGTVALGTDVPSKILRMHLPNYGGEIICQKGAFLAGSDDINIEMAFTKSFTTGFFGGEGFVLQKLSGEGDAYVKATGALVTKQLEEGETLRVTAGSLVAFEASIDYDVQMMKGMKNVVFGGEGLFITTLTGPGTVYLQGMQFDRMVDQIARRIPRGGGMPIFMGGMG 308
BLAST of mRNA_P-lacustris_contig101.186.1 vs. uniprot
Match: B8C800_THAPS (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C800_THAPS) HSP 1 Score: 290 bits (743), Expect = 1.870e-88 Identity = 148/241 (61.41%), Postives = 186/241 (77.18%), Query Frame = 1 Query: 292 PLDFDMASKIEGQESQMVTFELEPGQVIRAEAGNLVFMEDGIEMDTNTGGGASSMFRRVITGQNMFVTDYINRGSFT--SKVGLGTDVPSKIVRLPLAAYGGAVICQRGAFLAGSHTIDIQTEFTKMMA-GFFGGEGFVLQRLTGIGDAFVKASGPLIQRELREGETLRVSSGSVVAFSTSVQYDVQTIPGFKNVVFGGEGLFITKLTGPGTVFLQGLPFDRMVDQIARRIPGGGRGGMGM 1005
P+DFD+AS IEG+ESQ+VT LEP QV+RAE+G +++M G+ M+T TGGG S+ F+R +TGQN+F++DY GS V LG+D PSKIVRL L YGG VICQ+GA L SHT+DIQ EFTK + GFFGGEGFVLQ LTG GD VKA G LI+++L+EGE+LRVSSG +V F V+YDV +PGFKNV+FGGEGLF+T L GPGTV+LQG+P RM+ +IARR+P GG G+G+
Sbjct: 74 PIDFDIASSIEGKESQIVTIRLEPNQVLRAESGAMMYMTSGVSMNTTTGGGMSAGFQRFLTGQNVFISDYTYDGSNGPFGFVALGSDFPSKIVRLSLDEYGGKVICQKGALLCASHTVDIQVEFTKKFSTGFFGGEGFVLQGLTGTGDVLVKAGGTLIRKDLKEGESLRVSSGCLVGFQQGVEYDVAMVPGFKNVLFGGEGLFLTTLKGPGTVWLQGMPPQRMISEIARRVPSGG--GIGL 312 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig101.186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig101.186.1 >prot_P-lacustris_contig101.186.1 ID=prot_P-lacustris_contig101.186.1|Name=mRNA_P-lacustris_contig101.186.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=498bp MTCRGMASSARQLAVLQRSHRIGSTLLATSGPLSTLPISARAATATAVSPback to top mRNA from alignment at P-lacustris_contig101:92218..103260+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig101.186.1 ID=mRNA_P-lacustris_contig101.186.1|Name=mRNA_P-lacustris_contig101.186.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=11043bp|location=Sequence derived from alignment at P-lacustris_contig101:92218..103260+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig101:92218..103260+ >mRNA_P-lacustris_contig101.186.1 ID=mRNA_P-lacustris_contig101.186.1|Name=mRNA_P-lacustris_contig101.186.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2988bp|location=Sequence derived from alignment at P-lacustris_contig101:92218..103260+ (Pleurocladia lacustris SAG_25_93)back to top |