mRNA_P-lacustris_contig1009.171.1 (mRNA) Pleurocladia lacustris SAG_25_93
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-lacustris_contig1009.171.1 vs. uniprot
Match: D7FV40_ECTSI (Valine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV40_ECTSI) HSP 1 Score: 329 bits (844), Expect = 3.400e-96 Identity = 178/245 (72.65%), Postives = 197/245 (80.41%), Query Frame = 1 Query: 1210 YIEASKTRIGTFAATGEGDEAETRA-------------------------------QLPRRGDALMVAPWPKVDDVPLAMDESAISRFEAIQALVRSVRNAKAEYQVPPGKKIPAVVQVSDKALRSDIMQEVATLCLLGRLDADGLEVRGLDGPPEGQAVRLVVQDGLEVYLPMAGLVDKEKERARLEKQAGKLAKDIEVLEKRLLGSNFAEKAPAKVVEEAKANLQAQRDQLKTVQQAIANLDL 1851 YIEASKTRIG+FAA G+G+E E RA QLPR G+ALMVAPWPKVDD PLA+DE AI RFEA+Q+LVRSVRNAKAEY+V PGKKIPAVVQVS+KALRSD+++EVA LCLLGRLD +GLEV+GLDGPPEGQ V LVVQDGLEVYLPMAGLVDK+KERARLEKQAGKL KD+EVLEKRL GSNF EKAPAKVVEE +ANLQAQ+DQLKTVQQAI +LDL Sbjct: 792 YIEASKTRIGSFAAGGDGEEGEARARSSRRTLVYVFDTCLRLLHPFMPFITEALWQQLPRTGEALMVAPWPKVDDAPLAVDELAIGRFEAVQSLVRSVRNAKAEYKVEPGKKIPAVVQVSNKALRSDVIKEVAALCLLGRLDPEGLEVQGLDGPPEGQNVHLVVQDGLEVYLPMAGLVDKDKERARLEKQAGKLTKDMEVLEKRLSGSNFVEKAPAKVVEEVRANLQAQKDQLKTVQQAIVDLDL 1036
BLAST of mRNA_P-lacustris_contig1009.171.1 vs. uniprot
Match: A0A836CET5_9STRA (Valine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CET5_9STRA) HSP 1 Score: 194 bits (494), Expect = 1.780e-48 Identity = 119/240 (49.58%), Postives = 148/240 (61.67%), Query Frame = 1 Query: 1210 YIEASKTRIGTFAATGEGDEAE---------------------TRA---QLPRRGDALMVAPWPKVDDVPLAMDESAISRFEAIQALVRSVRNAKAEYQVPPGKKIPAVVQVSDKALRSDIMQEVATLCLLGRLDADGLEVRGLDGPP----EGQAVRLVVQDGLEVYLPMAGLVDKEKERARLEKQAGKLAKDIEVLEKRLLGSNFAEKAPAKVVEEAKANLQAQRDQLKTVQQAIANL 1845 YIEASK R+G ++ E A T A QLP GDAL+VAPWP++ D PL +D +A +RFEA QALVRS+RNA+AEY+V P +KI A VQVSD ALR+D+ E A L LL RLD L V +DG P G+AV VVQDGLE YLP+AG+VD KE+ARL KQA K+ KDI L RL S FA+KAP VVE +A L +D+L TV ++ ++ Sbjct: 757 YIEASKVRMGD-RSSAEAQTARRVLVYVFDTCLRLLHPFMPFVTEALWQQLPHAGDALIVAPWPQMGDAPLPVDAAATARFEAFQALVRSIRNARAEYKVEPARKISANVQVSDAALRADLTAEAAALALLARLDPAALSVSAMDGAPGDAASGRAVHCVVQDGLEAYLPLAGMVDMAKEKARLAKQAEKIQKDIAALSGRLNSSGFADKAPPAVVEATRAQLVEMQDKLATVLASMESM 995
BLAST of mRNA_P-lacustris_contig1009.171.1 vs. uniprot
Match: A0A4D9D6S5_9STRA (Valine--tRNA ligase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6S5_9STRA) HSP 1 Score: 162 bits (410), Expect = 3.010e-41 Identity = 105/247 (42.51%), Postives = 143/247 (57.89%), Query Frame = 1 Query: 1210 YIEASKTRIGTFAATGEGDEAETRA---------------------------QLPRRGDALMVAPWPKVD-DVPLAMDESAISRFEAIQALVRSVRNAKAEYQV----------PPGKKIPAVVQVSDKALRSDIMQEVATLCLLGRLDADGLEVRGLDGPPEG----QAVRLVVQDGLEVYLPMAGLVDKEKERARLEKQAGKLAKDIEVLEKRLLGSNFAEKAPAKVVEEAKANLQAQRDQLKTV 1824 YIEASKTR+ ++TG A T QLP G+AL+VAPWP+ + + L +D AI +F QALVR++RNA+AEY+V PGKK+ A +QV+D A R ++ +E L LLGR+D + L + G++ E QAVRL+V+DGLE YLP+A +VD +KER RL KQA KL +I LEKRL G+ F KAP +VE K +L +++QL+TV Sbjct: 44 YIEASKTRMAP-SSTGTSPSASTTRRVLVYVFDTCLRLLHPFMPYITEVLWQQLPHDGEALIVAPWPQEEGEEKLHVDREAIDQFRRFQALVRAIRNARAEYKVRREAGREGGVEPGKKVAAQIQVADPAFREELEREREVLSLLGRVDGEKLSLTGIEAREESSEGPQAVRLIVEDGLECYLPLADMVDAKKERERLSKQAVKLEGEIAGLEKRLSGTAFLAKAPPALVESTKQSLSEKKEQLQTV 289
BLAST of mRNA_P-lacustris_contig1009.171.1 vs. uniprot
Match: A0A7S3XNU9_HETAK (Valine--tRNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNU9_HETAK) HSP 1 Score: 166 bits (419), Expect = 6.130e-39 Identity = 130/333 (39.04%), Postives = 168/333 (50.45%), Query Frame = 1 Query: 955 LTQLLAEARAATGEKGTPAQRVPASRPAPEKSLLQLPTREEPIVSPDRRDHGDAVVLLDEPTHTPATRPA*NIGSLPS----FHAREFR--YIEASKTRIGTFAATGEGDEAETRA--------------------------QLPRRGDALMVAPWPK-VDDVPLAMDESAISRFEAIQALVRSVRNAKAEYQVPPGKKIPAVVQVSDKALRSDIMQEVATLCLLGRLDADGLEVRGLDG--PPEGQAVRLVVQDGLEVYLPMAGLVDKEKERARLEKQAGKLAKDIEVLEKRLLGSNFAEKAPAKVVEEAKANLQAQRDQLKTVQQAIANLD 1848 L L AE RAA +G P + L LP E+ IVS D LD A N+G S F E+ YIE+SKTR+ T A A R +LPR GDALMVAPWPK + L + A+ R+ A+QALVR+VRNA+AEY V G+K+ A VQV+D LR+++ E A L LLGRLDA+ L V L G P E +AVRLVVQDG+E YLP+AG+VD KE+ RLEKQ L S FA+KAP +V+E + +R+Q+ T+Q +I ++ Sbjct: 679 LKDLPAEERAALAVRG----------PMSAEELAALPLPEQHIVSLCHELANDVTASLD----------AYNLGDAGSKIYQFLWDEYADWYIESSKTRMRTDQA------AMARRVLVYVFDTCLRLLHPFMPYVTEVLWQELPRAGDALMVAPWPKPAGEAALPVAAGAVRRYRALQALVRAVRNARAEYNVDQGRKVEAAVQVADPVLRAELTAEAAALALLGRLDAEKLSVGELTGASPYEEKAVRLVVQDGVEAYLPLAGMVDFAKEKKRLEKQLXXXXXXXXXXXXXLNSSGFADKAPPEVLEATRQQAAEKREQVATIQASIKEIE 985
BLAST of mRNA_P-lacustris_contig1009.171.1 vs. uniprot
Match: K0SAX9_THAOC (Valine--tRNA ligase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SAX9_THAOC) HSP 1 Score: 156 bits (395), Expect = 7.410e-36 Identity = 106/254 (41.73%), Postives = 141/254 (55.51%), Query Frame = 1 Query: 1210 YIEASKTRIGTFAATGEGDEAETRAQ----------------------------LPRRG---------DALMVAPWPKVDDVPLAMDESAISRFEAIQALVRSVRNAKAEYQVPPGKKIPAVVQVSDKALRSDIMQEVATLCLLGRLDADGLEV--RGLD---GPPEGQAVRLVVQDGLEVYLPMAGLVDKEKERARLEKQAGKLAKDIEVLEKRLLGSNFAEKAPAKVVEEAKANLQAQRDQLKTVQQAIANL 1845 YIE SKTR+ + G G E AQ LPR+ ++LM+A WP++DD PLA D A++ FE QAL RS+RNA+AEY V GKKI A V V+ L+ I E+ +L +L +LD D + V G D EG AV+LVVQDG+E YLP++G+VD EKER RLE+Q+ KL+K+IE L RL FA+KAP +V++A+ L DQ VQ ++A L Sbjct: 919 YIEISKTRL--YEGFGGGGEDAKTAQRVLVYILDTSMRLLHPYMPYVTEQLWHHLPRQSRLDGGVAGVNSLMLADWPQMDDAPLATDAEAVATFEVFQALTRSIRNARAEYNVEQGKKISATV-VASGHLKDAIESELKSLVMLAKLDPDQVAVVEAGSDEANSASEGDAVQLVVQDGVEAYLPLSGMVDAEKERQRLERQSAKLSKEIEKLAGRLNSPGFADKAPPAIVDKARVELAELEDQASKVQASLAAL 1169
BLAST of mRNA_P-lacustris_contig1009.171.1 vs. uniprot
Match: A0A7S3C4N3_9VIRI (Valine--tRNA ligase n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3C4N3_9VIRI) HSP 1 Score: 150 bits (379), Expect = 3.430e-35 Identity = 103/240 (42.92%), Postives = 134/240 (55.83%), Query Frame = 1 Query: 1210 YIEASKTRIGTFAATGEGDEAETRA--------------------------QLPRRGDALMVAPWPKVDDVPLAMDESAISRFEAIQALVRSVRNAKAEYQVPPGKKIPAVVQVSDKALRSDIMQEVATLCLLGRLDADGLEVRGLDGPPE--GQAVRLVVQDGLEVYLPMAGLVDKEKERARLEKQAGKLAKDIEVLEKRLLGSNFAEKAPAKVVEEAKANLQAQRDQLKTVQQAIANL 1845 Y+E +KTR T+ G D A TR LP G ++M APWP + P +D +RFE +QA+VRS+RNA+AEYQV PGK+IPA V +D +D+ E A LC L +LD +G E+ + P + AVRLVV+DG+ V LPM+GLVD EKE RL KQA KL K + LE RL S+F KAPAKVV+ AKA + R Q + + +A L Sbjct: 266 YVELAKTR--TYGHEGAPDAAVTRRVLAYCYERFVRMLHPVMPYATEQLWQALPHTGVSVMTAPWP---EPPAEVDAEVDARFEVLQAVVRSMRNARAEYQVAPGKRIPATVVATDAGALADLQAERAALCFLAKLD-EGFELAA-EAPTDVADDAVRLVVRDGVSVVLPMSGLVDVEKETERLTKQAAKLDKSLGQLEARL-SSDFVNKAPAKVVDAAKAEAEEFRAQREQITARLAEL 497
BLAST of mRNA_P-lacustris_contig1009.171.1 vs. uniprot
Match: A0A8J5X336_DIALT (Valine--tRNA ligase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X336_DIALT) HSP 1 Score: 154 bits (388), Expect = 4.800e-35 Identity = 108/254 (42.52%), Postives = 138/254 (54.33%), Query Frame = 1 Query: 1210 YIEASKTRIGTFAAT----GEGDEAETRA-----------------------------------QLPRRGDALMVAPWPKVDDVP-LAMDESAISRFEAIQALVRSVRNAKAEYQVPPGKKIPAVVQVSDKALRSDIMQEVATLCLLGRLDADGLEVRGLDGPPEG--QAVRLVVQDGLEVYLPMAGLVDKEKERARLEKQAGKLAKDIEVLEKRLLGSNFAEKAPAKVVEEAKANLQAQRDQLKTVQQAIANL 1845 YIEASKTR AA+ GEG EA ++P G +LM+APWP P L +D A+ F Q VR+VRNA+AEY+V PGKKI AVV VSD + +++ E A LL R+D + L P G +AV LVV DG+EV+LP+A LVD +KE ARLEKQA KL I+ L RL FA+KAPA VV A A L QR+QL+T++++IA+L Sbjct: 768 YIEASKTRFQGEAASRASGGEGAEATAETARAAAEARRTLVYVLDCGLRLLHPFMPYVTEAIWQRMPHDGPSLMLAPWPLGRGAPPLPVDAGALDAFGVFQDTVRAVRNARAEYKVEPGKKIHAVVCVSDPSKLAELRSEAAAFALLARVDPERLVWSSAMCAPAGAGKAVHLVVADGVEVFLPLANLVDADKETARLEKQAAKLQASIDKLAARLGSPGFADKAPADVVALATAELAEQREQLETIRKSIADL 1021
BLAST of mRNA_P-lacustris_contig1009.171.1 vs. uniprot
Match: A0A7S4VM19_9STRA (Valine--tRNA ligase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VM19_9STRA) HSP 1 Score: 144 bits (364), Expect = 7.230e-35 Identity = 101/254 (39.76%), Postives = 138/254 (54.33%), Query Frame = 1 Query: 1210 YIEASKTRIGTFAATGEGDEAETRA-----------------------------QLPRRG-------DALMVAPWPKVDD-VPLAMDESAISRFEAIQALVRSVRNAKAEYQVPPGKKIPAVVQVSDKALRSDIMQEVATLCLLGRLDADGLEV--RGLDGPPEGQAV---RLVVQDGLEVYLPMAGLVDKEKERARLEKQAGKLAKDIEVLEKRLLGSNFAEKAPAKVVEEAKANLQAQRDQLKTVQQAIANL 1845 YIE SKTR+ + G G E E +A +PR ALM+A WP++DD VPL E A+S FE+ QAL RS+RNA+AEY V PGK+I A + V+ +L+ +I EV +L L +LD + + V G D AV +LVVQDG+E YLP++GL+D KER RLEKQ+ K+ K+I+ L RL F +KAPA VV++AK L DQ ++ ++ L Sbjct: 53 YIEISKTRL--YEGAGGGGEEEAKAARRVLVYILDTSLRLLHPYMPYVTEQLWHHIPRPSATEDQVAHALMLADWPQMDDEVPLTTSEEAVSSFESFQALTRSIRNARAEYNVEPGKRISATI-VAKGSLKDEISAEVKSLVALAKLDPEQVIVVEAGSDEAKAAAAVESVQLVVQDGVEAYLPLSGLIDPVKERKRLEKQSEKIEKEIQKLAGRLQSKGFVDKAPAAVVDKAKNELAELEDQAAKIKSSLEAL 303
BLAST of mRNA_P-lacustris_contig1009.171.1 vs. uniprot
Match: A0A7S2EXA7_TRICV (Valine--tRNA ligase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EXA7_TRICV) HSP 1 Score: 142 bits (359), Expect = 7.270e-35 Identity = 89/198 (44.95%), Postives = 121/198 (61.11%), Query Frame = 1 Query: 1279 RAQLPRRGDA--LMVAPWPKVDDV-PLAMDESAISRFEAIQALVRSVRNAKAEYQVPPGKKIPAVVQVSDKALRSDIMQEVATLCLLGRLDADGLEVRGLDGPPEGQA-----VRLVVQDGLEVYLPMAGLVDKEKERARLEKQAGKLAKDIEVLEKRLLGSNFAEKAPAKVVEEAKANLQAQRDQLKTVQQAIANLD 1848 RA+ G A +M+A WP++DD PL A+S FE+ QAL RS+RNA+AEY V PGKKI A + V+ ++ I E+ +L LL +LD + + V +A V+LVVQDG+E YLP++GL+D EKER RLEKQA K+ K IE L RL FA+KAP VVE+A+A L DQ ++ + L+ Sbjct: 47 RAEPDSEGAAHSIMLASWPQMDDESPLVTSPEAVSSFESFQALTRSIRNARAEYNVEPGKKISATI-VAKGPIKDQIESELKSLVLLAKLDPESVAVYEAGSSEAAEATSVESVQLVVQDGVEAYLPLSGLIDPEKERKRLEKQAEKVGKAIEKLRGRLESKGFADKAPPAVVEKARAELAELEDQEAKIKSGLEALN 243
BLAST of mRNA_P-lacustris_contig1009.171.1 vs. uniprot
Match: A0A7S3F538_9EUKA (Valine--tRNA ligase n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F538_9EUKA) HSP 1 Score: 145 bits (366), Expect = 8.190e-35 Identity = 87/192 (45.31%), Postives = 113/192 (58.85%), Query Frame = 1 Query: 1273 ETRAQLPRRGDALMVAPWPKVDDVPLAMDESAISRFEAIQALVRSVRNAKAEYQVPPGKKIPAVVQVSDKALRSDIMQEVATLCLLGRLDADGLEVRGLDGP-PEGQAVRLVVQDGLEVYLPMAGLVDKEKERARLEKQAGKLAKDIEVLEKRLLGSNFAEKAPAKVVEEAKANLQAQRDQLKTVQQAIANL 1845 E +LP G +LM+A WP+ DD PL +D A RF ++QALVRSVRNA+AEY+V PGK I A V + L + E + L R+D +G D +G VRLVV+D LE LP+AGLVD +KER RL KQ KL I + KRL F +KAP V+E+A+ L Q +QL+ V A+ L Sbjct: 146 EVWQRLPHEGPSLMIADWPQRDDEPLCVDADAEQRFGSLQALVRSVRNARAEYRVEPGKLIAATVIAGE--LEPTLAAETEAITSLARIDPAAFSFQGADAEGADGAVVRLVVEDSLEAVLPLAGLVDSDKERVRLGKQQTKLEASIAKVSKRLEAPGFVDKAPPAVLEKARTELAEQEEQLQGVLDALKQL 335 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1009.171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1009.171.1 >prot_P-lacustris_contig1009.171.1 ID=prot_P-lacustris_contig1009.171.1|Name=mRNA_P-lacustris_contig1009.171.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=181bp MVAPWPKVDDVPLAMDESAISRFEAIQALVRSVRNAKAEYQVPPGKKIPAback to top mRNA from alignment at P-lacustris_contig1009:23795..29061+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1009.171.1 ID=mRNA_P-lacustris_contig1009.171.1|Name=mRNA_P-lacustris_contig1009.171.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=5267bp|location=Sequence derived from alignment at P-lacustris_contig1009:23795..29061+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1009:23795..29061+ >mRNA_P-lacustris_contig1009.171.1 ID=mRNA_P-lacustris_contig1009.171.1|Name=mRNA_P-lacustris_contig1009.171.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1086bp|location=Sequence derived from alignment at P-lacustris_contig1009:23795..29061+ (Pleurocladia lacustris SAG_25_93)back to top |