mRNA_P-lacustris_contig1009.170.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1009.170.1
Unique NamemRNA_P-lacustris_contig1009.170.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1009.170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1009contigP-lacustris_contig1009:20461..21034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size576
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815275.3267117-UTR-P-lacustris_contig1009:20460..207131622815275.3267117-UTR-P-lacustris_contig1009:20460..20713Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1009 20461..20713 +
1693493443.9530573-UTR-P-lacustris_contig1009:20460..207131693493443.9530573-UTR-P-lacustris_contig1009:20460..20713Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1009 20461..20713 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815275.3369122-CDS-P-lacustris_contig1009:20713..210341622815275.3369122-CDS-P-lacustris_contig1009:20713..21034Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1009 20714..21034 +
1693493443.9640453-CDS-P-lacustris_contig1009:20713..210341693493443.9640453-CDS-P-lacustris_contig1009:20713..21034Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1009 20714..21034 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1009.170.1prot_P-lacustris_contig1009.170.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1009 20714..21034 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1009.170.1

>prot_P-lacustris_contig1009.170.1 ID=prot_P-lacustris_contig1009.170.1|Name=mRNA_P-lacustris_contig1009.170.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=107bp
MLRPLQGSRGLSTIPAFEECSKDVPQLLYTRTPAPSYHRHTIPAEPRVLV
WAHPRGHNLDEKSHACVSTWHGMAVWRIHAPTRPSFNQKRFEENSQPRSR
RHPRVLP
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mRNA from alignment at P-lacustris_contig1009:20461..21034+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1009.170.1 ID=mRNA_P-lacustris_contig1009.170.1|Name=mRNA_P-lacustris_contig1009.170.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=574bp|location=Sequence derived from alignment at P-lacustris_contig1009:20461..21034+ (Pleurocladia lacustris SAG_25_93)
TGGGGCTGATGTGGATGGATGACGGGTCTTTTATCGTATGCATGGACAGT
TTGCACACATGCGAACCGGTAAAGATCCAACCTAAGCTATCTTTGCGATG
TATACTTCTCCATCCCGGGACGGATGGAAGGTCCTGACGCCGAGACGGGG
TCACACGACGGCCCACCCCTCGAGGTCACTCTCATAACGTGACCCTCGCT
GGTGAAGCCTCACTTGACCTCCCCGGCACTTCCTCGCCACATCACACTGA
AGAATGCTGCGCCCGCTACAGGGGAGTAGAGGCCTATCCACAATTCCCGC
GTTCGAGGAATGTTCCAAGGATGTTCCACAACTGCTGTATACCCGCACCC
CGGCACCCTCTTATCACCGGCATACAATCCCCGCGGAACCCAGGGTTCTC
GTGTGGGCGCATCCCCGAGGACACAACCTTGACGAGAAATCGCACGCTTG
TGTATCGACATGGCATGGCATGGCAGTGTGGCGTATTCACGCTCCGACCC
GACCCTCGTTCAACCAGAAAAGGTTCGAGGAAAATTCGCAGCCACGCTCC
CGACGACACCCCAGAGTTCTGCCT
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Coding sequence (CDS) from alignment at P-lacustris_contig1009:20461..21034+

>mRNA_P-lacustris_contig1009.170.1 ID=mRNA_P-lacustris_contig1009.170.1|Name=mRNA_P-lacustris_contig1009.170.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=642bp|location=Sequence derived from alignment at P-lacustris_contig1009:20461..21034+ (Pleurocladia lacustris SAG_25_93)
ATGCTGCGCCCGCTACAGGGGAGTAGAGGCCTATCCACAATTCCCGCGTT
CGAGGAATGTTCCAAGGATGTTCCACAACTGCTGTATACCCGCACCCCGG
CACCCTCTTATCACCGGCATACAATCCCCGCGGAACCCAGGGTTCTCGTG
TGGGCGCATCCCCGAGGACACAACCTTGACGAGAAATCGCACGCTTGTGT
ATCGACATGGCATGGCATGGCAGTGTGGCGTATTCACGCTCCGACCCGAC
CCTCGTTCAACCAGAAAAGGTTCGAGGAAAATTCGCAGCCACGCTCCCGA
CGACACCCCAGAGTTCTGCCTATGCTGCGCCCGCTACAGGGGAGTAGAGG
CCTATCCACAATTCCCGCGTTCGAGGAATGTTCCAAGGATGTTCCACAAC
TGCTGTATACCCGCACCCCGGCACCCTCTTATCACCGGCATACAATCCCC
GCGGAACCCAGGGTTCTCGTGTGGGCGCATCCCCGAGGACACAACCTTGA
CGAGAAATCGCACGCTTGTGTATCGACATGGCATGGCATGGCAGTGTGGC
GTATTCACGCTCCGACCCGACCCTCGTTCAACCAGAAAAGGTTCGAGGAA
AATTCGCAGCCACGCTCCCGACGACACCCCAGAGTTCTGCCT
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