mRNA_P-lacustris_contig1007.163.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1007.163.1
Unique NamemRNA_P-lacustris_contig1007.163.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1007.163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1007contigP-lacustris_contig1007:29470..30161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size550
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1007.163.1prot_P-lacustris_contig1007.163.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1007 29677..30121 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815273.8767483-UTR-P-lacustris_contig1007:29469..296761622815273.8767483-UTR-P-lacustris_contig1007:29469..29676Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1007 29470..29676 +
1693493443.2826788-UTR-P-lacustris_contig1007:29469..296761693493443.2826788-UTR-P-lacustris_contig1007:29469..29676Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1007 29470..29676 +
1622815274.2807853-UTR-P-lacustris_contig1007:30121..301611622815274.2807853-UTR-P-lacustris_contig1007:30121..30161Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1007 30122..30161 +
1693493443.3096123-UTR-P-lacustris_contig1007:30121..301611693493443.3096123-UTR-P-lacustris_contig1007:30121..30161Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1007 30122..30161 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815274.2577093-CDS-P-lacustris_contig1007:29676..298071622815274.2577093-CDS-P-lacustris_contig1007:29676..29807Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1007 29677..29807 +
1693493443.2916899-CDS-P-lacustris_contig1007:29676..298071693493443.2916899-CDS-P-lacustris_contig1007:29676..29807Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1007 29677..29807 +
1622815274.2700045-CDS-P-lacustris_contig1007:29949..301211622815274.2700045-CDS-P-lacustris_contig1007:29949..30121Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1007 29950..30121 +
1693493443.3004184-CDS-P-lacustris_contig1007:29949..301211693493443.3004184-CDS-P-lacustris_contig1007:29949..30121Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1007 29950..30121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1007.163.1

>prot_P-lacustris_contig1007.163.1 ID=prot_P-lacustris_contig1007.163.1|Name=mRNA_P-lacustris_contig1007.163.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=101bp
MEWARQSPAFVHIQNVEDTHSLLFCESQIETGAIPEAAKIISTGEVESFA
KAMPRKDFENRDSFLFTPSILLLLLRQRQGAGFMEATIGSAMSPSNSLQT
*
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mRNA from alignment at P-lacustris_contig1007:29470..30161+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1007.163.1 ID=mRNA_P-lacustris_contig1007.163.1|Name=mRNA_P-lacustris_contig1007.163.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=692bp|location=Sequence derived from alignment at P-lacustris_contig1007:29470..30161+ (Pleurocladia lacustris SAG_25_93)
CTCGTTTTCGTTCCGCGGAAATTTTTGGCCCGTCATACCTGGAGGCATCC
AGCGATGCCATCAGTGATGCCCGTGAACAACCTAAATCAGCTTTTCAAGC
GGGAAGAATGTGGTAGCGGGTGCTCCCAAAGCATACGCTGATGTTGCACA
GCCGGACTTCGCCTAAACATTAATCAAAGACAATGTCTTCGACTTTTCTG
TGATGCTATGGAATGGGCCAGGCAGTCGCCAGCTTTCGTGCACATACAGA
ACGTCGAGGATACACACAGTCTTCTTTTCTGCGAATCCCAGATTGAAACA
GGCGCGATTCCAGAAGCAGCAAAAATAATTTCCACAGGGCCTGGGGGGTA
AACTCGCGTACATTCTCAAATAGCAAGGTTCAGATTTCATCGCTTCGAGA
GTAAAGCCACAAAACGAATAAACCGGCCAGCACACGGGTATGCGAGTGTC
GTTATAGCTTGTCAGCCTGGCGCAGCAAAGCGAGGTTGAATCGTTTGCCA
AAGCGATGCCTCGCAAAGACTTCGAAAACCGTGACAGTTTTTTATTCACC
CCGAGCATCTTGCTTCTCCTGCTCCGACAACGCCAGGGGGCAGGGTTTAT
GGAAGCAACTATAGGCAGTGCGATGTCTCCATCTAATTCCTTGCAAACCT
AATCCGCTGCGTTTACACGTTCGCCCGCTAGATGTCGCCGGG
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Coding sequence (CDS) from alignment at P-lacustris_contig1007:29470..30161+

>mRNA_P-lacustris_contig1007.163.1 ID=mRNA_P-lacustris_contig1007.163.1|Name=mRNA_P-lacustris_contig1007.163.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=606bp|location=Sequence derived from alignment at P-lacustris_contig1007:29470..30161+ (Pleurocladia lacustris SAG_25_93)
ATGGAATGGGCCAGGCAGTCGCCAGCTTTCGTGCACATACAGAACGTCGA
GGATACACACAGTCTTCTTTTCTGCGAATCCCAGATTGAAACAGGCGCGA
TTCCAGAAGCAGCAAAAATAATTTCCACAGGATGGAATGGGCCAGGCAGT
CGCCAGCTTTCGTGCACATACAGAACGTCGAGGATACACACAGTCTTCTT
TTCTGCGAATCCCAGATTGAAACAGGCGCGATTCCAGAAGCAGCAAAAAT
AATTTCCACAGGCGAGGTTGAATCGTTTGCCAAAGCGATGCCTCGCAAAG
ACTTCGAAAACCGTGACAGTTTTTTATTCACCCCGAGCATCTTGCTTCTC
CTGCTCCGACAACGCCAGGGGGCAGGGTTTATGGAAGCAACTATAGGCAG
TGCGATGTCTCCATCTAATTCCTTGCAAACCTAACGAGGTTGAATCGTTT
GCCAAAGCGATGCCTCGCAAAGACTTCGAAAACCGTGACAGTTTTTTATT
CACCCCGAGCATCTTGCTTCTCCTGCTCCGACAACGCCAGGGGGCAGGGT
TTATGGAAGCAACTATAGGCAGTGCGATGTCTCCATCTAATTCCTTGCAA
ACCTAA
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