mRNA_P-lacustris_contig1006.159.1 (mRNA) Pleurocladia lacustris SAG_25_93
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1006.159.1 vs. uniprot
Match: D7FN21_ECTSI (Similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN21_ECTSI) HSP 1 Score: 240 bits (612), Expect = 9.690e-65 Identity = 143/283 (50.53%), Postives = 169/283 (59.72%), Query Frame = 2 Query: 782 PGSAPTLEEDKAAIAATTRVWIATVTSGTPDAPRRRRVSTLTTASLW-VRSRAGSATP*Q------------DLQLLRILR*APRASGD-SVHPGHVVSVRRFCGPGRHVHLRLRGRRKTVERPCRFSFTFKRDHPKSRTAWTIIEHHSSLMPQAPPGLKPA----------LKTLEITPDMKAVADATILWKDTVTSNTDDAPKKTAALYAPDAVFWGTVSEQVRDEPQHFSDYFEFFARLPNLRLTEYSPAPTKVYGDFGVQTGIYTFAWEGADGATIGPR 1558
P +APT EEDKAA+AATT VW TVTSGT DAP++ LW S TP Q +L+L+ A R GD +V G F G TVE+ RFSFTF+RDHP+S T WTI+EHHSS MP AP GLK K LE+TP+MKA ++ TI+WKDTVT T+DAPKKT+ALY DAV WGTVSE+VR+ P+ DYF+FFARLP LRL EYSPAP +VYG F VQ G YTFAW+G D T+ R
Sbjct: 124 PPAAPTEEEDKAAVAATTVVWKDTVTSGTYDAPKKTAALYAEDGVLWGTVSEEVRDTPEQIYAYFDYFARLPELRLVEYTPVAVRVYGDFAVQAGTYT----FAFQGADGA--------TVEKRARFSFTFRRDHPESPTPWTIVEHHSSSMPNAPAGLKRVGPNAELVKVTPKELEVTPEMKAGSETTIVWKDTVTLGTEDAPKKTSALYPEDAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLVEYSPAPARVYGQFAVQAGTYTFAWQGNDDETVEKR 394
BLAST of mRNA_P-lacustris_contig1006.159.1 vs. uniprot
Match: A0A6H5K0Z5_9PHAE (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0Z5_9PHAE) HSP 1 Score: 239 bits (610), Expect = 2.020e-64 Identity = 145/276 (52.54%), Postives = 165/276 (59.78%), Query Frame = 2 Query: 794 PTLEEDKAAIAATTRVWIATVTSGTPDAPRRRRVSTLTTASLW-VRSRAGSATP*Q---------DLQLLRILR*AP---RASGD-SVHPGHVVSVRRFCGPGRHVHLRLRGRRKTVERPCRFSFTFKRDHPKSRTAWTIIEHHSSLMPQAPPGLK-------PALKTLEITPDMKAVADATILWKDTVTSNTDDAPKKTAALYAPDAVFWGTVSEQVRDEPQHFSDYFEFFARLPNLRLTEYSPAPTKVYGDFGVQTGIYTFAWEGADGATIGPR 1558
PT EED+ A+A TT VW TVTSGT DAP++ A LW S TP Q L LR++ P R GD +V G F GP TVE+ RFSFTF+R P S WTI+EHHSS MP AP GLK P EITPD KAVA+ TI+WKDTVT TDDAPKKTAALYAPDAV WGTVSE+VR+ P+ DYF+FFARLP LRL EY+PAP +VYG+F VQ G YTFAWEG DG T+ R
Sbjct: 161 PTPEEDRQAVADTTLVWKETVTSGTYDAPKKTAALYAEDAVLWGTVSEEVRDTPEQIYAYFDYFARLPELRVVEYTPVAVRVYGDFAVQAGTYTFA--FQGPDGV----------TVEKRARFSFTFRRGRPGSPRPWTIVEHHSSSMPTAPAGLKRVGQDAMPKKIVKEITPDQKAVAETTIVWKDTVTLGTDDAPKKTAALYAPDAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLLEYTPAPVRVYGEFAVQAGTYTFAWEGDDGDTVEKR 424
BLAST of mRNA_P-lacustris_contig1006.159.1 vs. uniprot
Match: D7FUF8_ECTSI (Similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF8_ECTSI) HSP 1 Score: 229 bits (585), Expect = 3.420e-61 Identity = 136/271 (50.18%), Postives = 155/271 (57.20%), Query Frame = 2 Query: 782 PGSAPTLEEDKAAIAATTRVWIATVTSGTPDAPRRRRVSTLTTASLW-VRSRAGSATP*QDLQLLRILR*APRASGDSVHPGHVVSVRRFCGPGRHVHLRLRGRR-KTVERPCRFSFTFKRDHPKSRTAWTIIEHHSSLMPQAPPGLKPA----------LKTLEITPDMKAVADATILWKDTVTSNTDDAPKKTAALYAPDAVFWGTVSEQVRDEPQHFSDYFEFFARLPNLRLTEYSPAPTKVYGDFGVQTGIYTFAWEGADGATIGPR 1558
PG A T ED+ A+A TT VW TVTSGT DAP++ LW S TP Q P P V F +G TVE+ RFSFTF+RD P S WTI+EHHSS MP AP GLK K +EITPD KAVA TI+WKDTVT TDDAPKKTAALYA DAV WGTVSE+VR+ P+ DYF+FFARLP LRL EY+PAP +VYG F V+ G YTFAW+G DG T+ R
Sbjct: 119 PGVATTEAEDQKAVADTTLVWKETVTSGTYDAPKKTAALYAEDGVLWGTVSEEVRDTPEQIYAYFDYFARLPELRVVEYTPVAVRVYGDFAIQAGTYTFAFQGADGATVEKRARFSFTFRRDRPGSPQPWTIVEHHSSSMPTAPAGLKRVGPNADLVKVTPKKVEITPDQKAVAATTIVWKDTVTLGTDDAPKKTAALYAADAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLVEYTPAPVRVYGQFAVEAGTYTFAWQGDDGKTVEKR 389
BLAST of mRNA_P-lacustris_contig1006.159.1 vs. uniprot
Match: A0A6H5LB09_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB09_9PHAE) HSP 1 Score: 235 bits (599), Expect = 1.090e-59 Identity = 138/273 (50.55%), Postives = 161/273 (58.97%), Query Frame = 2 Query: 794 PTLEED------KAAIAATTRVWIATVTSGTPDAPRRRRVSTLTTASLW-VRSRAGSATP*QDLQLLRILR*APRASGDSVHPGHVVSVRRFCGPGRHVHLRLRGRR-KTVERPCRFSFTFKRDHPKSRTAWTIIEHHSSLMPQAPPGLKPA----------LKTLEITPDMKAVADATILWKDTVTSNTDDAPKKTAALYAPDAVFWGTVSEQVRDEPQHFSDYFEFFARLPNLRLTEYSPAPTKVYGDFGVQTGIYTFAWEGADGATIGPR 1558
P L+ED KAA+AATT +W TVTSGT DAP++ LW S TP Q P P V F +G +TVE+ RFSFTF+RDHP S T WTI+EHHSS MP AP GLK K LEITPDMKAV++ TI+WK+TVT T+DAPKKTAALYA DAV WGTVSE+VR+ P+ DYF+FFARLP LRL EY+PAP +VYG F VQ G YTFAW+G DG T+ R
Sbjct: 1247 PKLQEDEEYAADKAAVAATTIIWKDTVTSGTYDAPKKTAALYAEDGVLWGTVSEEVRDTPEQIYAYFDYFARLPELRVVEYTPVAVRVYGDFAVQAGTYTFAFQGADGETVEKRARFSFTFRRDHPGSPTPWTIVEHHSSSMPNAPAGLKRVGPNAELVKVTPKKLEITPDMKAVSETTIVWKNTVTLGTEDAPKKTAALYAEDAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRLVEYTPAPARVYGQFAVQAGTYTFAWQGNDGETVEKR 1519
BLAST of mRNA_P-lacustris_contig1006.159.1 vs. uniprot
Match: A0A6H5JT29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT29_9PHAE) HSP 1 Score: 219 bits (559), Expect = 5.830e-59 Identity = 133/283 (47.00%), Postives = 155/283 (54.77%), Query Frame = 2 Query: 809 DKAAIAATTRVWIATVTSGTPDAPRRRRVSTLTTASLW-VRSRAGSATP*QDLQLLRILR*APRASGDSVHPGHVVSVRRFCGPGRHVHLRLRGRR-KTVERPCRFSFTFKRDHPKSRTAWTIIEHHSSLMPQAPPGLK------------PAL-------------------KTLEITPDMKAVADATILWKDTVTSNTDDAPKKTAALYAPDAVFWGTVSEQVRDEPQHFSDYFEFFARLPNLRLTEYSPAPTKVYGDFGVQTGIYTFAWEGADGATIGPR 1558
D+ A+A TT VW TVTSGT DAP++ A LW S TP Q P P V F +G TVE+ RFSFTF+RD P S WTI+EHHSS MP AP GLK P + K +EITPD KAVA TI+WKDTVT TDDAPKKTAALYAPDAV WGTVSE+VR+ P+ DYF+FFARLP LR+ EY+PAP +VYG+F V+ G YTFAW+G DG T+ R
Sbjct: 113 DQKAVADTTLVWKETVTSGTYDAPKKTAALYAEDAVLWGTVSEEVRDTPEQIYAYFDYFARLPELRVVEYTPVAVRVYGDFAIQAGTYTFAFQGADGATVEKRARFSFTFRRDRPGSPQPWTIVEHHSSSMPTAPAGLKRVGKLYSVRVFLPVVVGCEFFKVGPNADLVKVTPKKVEITPDQKAVAATTIVWKDTVTLGTDDAPKKTAALYAPDAVLWGTVSEEVRETPEQIYDYFDFFARLPKLRVVEYTPAPVRVYGEFAVEAGTYTFAWQGEDGKTVEKR 395
BLAST of mRNA_P-lacustris_contig1006.159.1 vs. uniprot
Match: D7FUF9_ECTSI (Similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF9_ECTSI) HSP 1 Score: 204 bits (518), Expect = 9.800e-52 Identity = 124/282 (43.97%), Postives = 152/282 (53.90%), Query Frame = 2 Query: 782 PGSAPTLEEDKAAIAATTRVWIATVTSGTPDAPRRRRVSTLTTASLW-VRSRAGSATP*Q---------DLQLLRILR*AP---RASGDSVHPGHVVSVRRFCGPGRHVHLRLRGRRKTVERPCRFSFTFKRDHPKSRTAWTIIEHHSSLMPQAPPGLK-----PALK-----TLEITPDMKAVADATILWKDTVTSNTDDAPKKTAALYAPDAVFWGTVSEQVRDEPQHFSDYFEFFARLPNLRLTEYSPAPTKVYGDFGVQTGIYTFAWEGADGATIGPR 1558
P + T ED+ A+A TT +W TVTSGT DAP++ +LW S TP Q L LR++ P R GD + G VE+ RFSFTF+RD+P + WTI+EHHSS MP AP GLK P + E TPD KAVA ++WKDTVT TDD P+KTA LYA DA WGTVSE+VRD P+ YF++FARLP LRL EY+P +VYGDF VQ G YTF+W+ DG T+ R
Sbjct: 163 PAKSATEAEDRRAVAETTVLWKDTVTSGTYDAPKKTAALYAPDGTLWGTVSEEVRDTPQQIYAYFDYFARLPELRVVEYTPVAVRVYGDFAVQAGTYTFSWQADDGA-----------IVEKRARFSFTFRRDNPGTERPWTIVEHHSSSMPTAPAGLKAVGVGPGIPRGPKVVKETTPDQKAVAATAVVWKDTVTMGTDDTPRKTADLYAQDATLWGTVSEEVRDTPEQIYAYFDYFARLPALRLVEYTPVAVRVYGDFAVQAGTYTFSWQDNDGDTVEKR 433
BLAST of mRNA_P-lacustris_contig1006.159.1 vs. uniprot
Match: A0A6H5JX02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX02_9PHAE) HSP 1 Score: 199 bits (506), Expect = 2.400e-51 Identity = 119/273 (43.59%), Postives = 148/273 (54.21%), Query Frame = 2 Query: 809 DKAAIAATTRVWIATVTSGTPDAPRRRRVSTLTTASLW-VRSRAGSATP*Q------------DLQLLRILR*APRASGDSVHPGHVVSVRRFCGPGRHVHLRLRGRRKTVERPCRFSFTFKRDHPKSRTAWTIIEHHSSLMPQAPPGLK-----PALK-----TLEITPDMKAVADATILWKDTVTSNTDDAPKKTAALYAPDAVFWGTVSEQVRDEPQHFSDYFEFFARLPNLRLTEYSPAPTKVYGDFGVQTGIYTFAWEGADGATIGPR 1558
D+ A+A TT +W TVTSGT DAP++ +LW S TP Q +L+++ A R GD + G VE+ RFSFTF+RD+P + WTI+EHHSS MP AP GLK P + E TPD KAVA ++WKDTVT TDD P+KTA LYA DA WGTVSE+VRD P+ YF++FARLP LRL EY+P +VYGDF VQ G YTF+W+ DG T+ R
Sbjct: 27 DRRAVAETTVLWKDTVTSGTYDAPKKTAALYAPDGTLWGTVSEEVRDTPQQIYAYFDYFARLPELKVVEYTPVAVRVYGDFAVQAGTYTFSWQADDGT-----------IVEKRARFSFTFRRDNPGTDRPWTIVEHHSSSMPTAPAGLKAVGVGPGIPRGPKVVKETTPDQKAVAATAVVWKDTVTMGTDDTPRKTADLYAQDATLWGTVSEEVRDTPEQIYAYFDYFARLPALRLVEYTPVAVRVYGDFAVQAGTYTFSWQDNDGTTVEKR 288
BLAST of mRNA_P-lacustris_contig1006.159.1 vs. uniprot
Match: A0A6H5K6U8_9PHAE (DUF4440 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6U8_9PHAE) HSP 1 Score: 147 bits (371), Expect = 2.610e-37 Identity = 67/105 (63.81%), Postives = 80/105 (76.19%), Query Frame = 2 Query: 1244 TPDMKAVADATILWKDTVTSNTDDAPKKTAALYAPDAVFWGTVSEQVRDEPQHFSDYFEFFARLPNLRLTEYSPAPTKVYGDFGVQTGIYTFAWEGADGATIGPR 1558
T D KAV AT W+DTVTSNT+DAPKKTAA+YA DA+FWGTVSE+VR+ P+H DYF+FFAR+P L + Y PAP +++GDF V G YTFAW GADGA R
Sbjct: 12 TADQKAVDAATRHWRDTVTSNTEDAPKKTAAIYADDALFWGTVSEEVRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAVHAGAYTFAWAGADGAMTETR 116
BLAST of mRNA_P-lacustris_contig1006.159.1 vs. uniprot
Match: A0A6H5K7Z6_9PHAE (DUF4440 domain-containing protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K7Z6_9PHAE) HSP 1 Score: 148 bits (373), Expect = 9.970e-37 Identity = 67/105 (63.81%), Postives = 80/105 (76.19%), Query Frame = 2 Query: 1244 TPDMKAVADATILWKDTVTSNTDDAPKKTAALYAPDAVFWGTVSEQVRDEPQHFSDYFEFFARLPNLRLTEYSPAPTKVYGDFGVQTGIYTFAWEGADGATIGPR 1558
T D KAV AT W+DTVTSNT+DAPKKTAA+YA DA+FWGTVSEQVR+ P+H DYF+FFAR+P L + Y PAP +++GDF + G YTFAW GADGA R
Sbjct: 77 TSDQKAVDAATRNWRDTVTSNTEDAPKKTAAIYADDALFWGTVSEQVRNTPEHVYDYFDFFARMPKLSMVAYDPAPPRIHGDFAIHAGAYTFAWAGADGAMTETR 181
BLAST of mRNA_P-lacustris_contig1006.159.1 vs. uniprot
Match: D7FY20_ECTSI (Similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY20_ECTSI) HSP 1 Score: 159 bits (401), Expect = 3.750e-36 Identity = 106/283 (37.46%), Postives = 134/283 (47.35%), Query Frame = 2 Query: 803 EEDKAAIAATTRVWIATVTSGTPDAPRRRRVSTLTTASLWVR-SRAGSATP*Q---------DLQLLRILR*APRASGDSVHPGHVVSVRRFCGPGRHVHLRLRGRRKTVERPCRFSFTFKRDHPKSRTA-WTIIEHHSSLMPQAP-----------------------PGLKPALKTLEITPDMKAVADATILWKDTVTSNTDDAPKKTAALYAPDAVFWGTVSEQVRDEPQHFSDYFEFFARLPNLRLTEYSPAPTKVYGDFGVQTGIYTFAWEGADGATI 1549
E DK A++A W VTSG DAPRR SLW S TP Q L LR++ P A+ + F G VE+ RFSFTF+RD + W I+EHHSS MP AP P K A + D +AVA AT++W V TD+AP+KTAALYA DA WG+VS+ +RD P YF+ F+RLP LRL +++P +VYGDF VQ G YTF+W G GA++
Sbjct: 352 ERDKKAVSAAAIAWTNAVTSGARDAPRRTAALYAEDGSLWETVSEEVCNTPQQITAYFERFARLPQLRMVEYTPVAARVYGEFAVLAGTYTFAWRGEDGG--------PVEKRARFSFTFRRDRTRGAPRPWLIVEHHSSSMPTAPXXXXXXXXXXXXXXXXEPVDPTPPRTKAAKIGNDPNADQRAVAAATVMWTRAVALGTDEAPRKTAALYAKDATLWGSVSDAIRDTPDLIYKYFDKFSRLPELRLVDFAPVTVRVYGDFAVQAGTYTFSWRGEGGASV 626 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1006.159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1006.159.1 >prot_P-lacustris_contig1006.159.1 ID=prot_P-lacustris_contig1006.159.1|Name=mRNA_P-lacustris_contig1006.159.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=145bp MPQAPPGLKPALKTLEITPDMKAVADATILWKDTVTSNTDDAPKKTAALYback to top mRNA from alignment at P-lacustris_contig1006:67729..76466- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1006.159.1 ID=mRNA_P-lacustris_contig1006.159.1|Name=mRNA_P-lacustris_contig1006.159.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=8738bp|location=Sequence derived from alignment at P-lacustris_contig1006:67729..76466- (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1006:67729..76466- >mRNA_P-lacustris_contig1006.159.1 ID=mRNA_P-lacustris_contig1006.159.1|Name=mRNA_P-lacustris_contig1006.159.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=870bp|location=Sequence derived from alignment at P-lacustris_contig1006:67729..76466- (Pleurocladia lacustris SAG_25_93)back to top |