mRNA_P-lacustris_contig1006.158.1 (mRNA) Pleurocladia lacustris SAG_25_93
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1006.158.1 vs. uniprot
Match: D7FN22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN22_ECTSI) HSP 1 Score: 290 bits (741), Expect = 5.830e-82 Identity = 184/296 (62.16%), Postives = 211/296 (71.28%), Query Frame = 1 Query: 1 GTRLFSSADDSSDSSDTSSEGWFRRAPS----ADRSSPGDVSPDKLALPALAAALRASRARTAAAQAKASRKMGILMSYLYVSHGQQRAGAYSSNHLLHRLLEETARLRDSLKVARGGEDRANRCEIDLAKSEVRVRELERDNRRLRRELEGARLRNRQAEAKARSSLSSLKTTLEDLEQDQGARCKRLRATTRSQRALLESLRRHVQRGYHTAPSFTTFQLMEQIFECLKSLESDAKFSPTRRRPHXXXXXXXXXXXXXXXXAASVKRGCPRRTHSPAAAAAAPRFLTEGV-PLP 873
GTR+FSS DDSSDSSDTSSE W R+P R S GDVSP KLALPALA ALRASRAR KASRK +L + L Q A+S ++ HRLLEET RLRDSLKVAR GE+RANRCE +LAKSE R RELE DNRRLRR+L+GARLR RQ EAKARSSLS+L+ +LEDL+ +Q ARCKR RATTRSQRALLESLRRHVQRG H+APSFT FQL+EQIF CL++LESDA+ SP RRR +RG P+R+ AAAAA PR +G+ P+P
Sbjct: 9 GTRMFSSVDDSSDSSDTSSECWNPRSPGQHSIGSRPSGGDVSPSKLALPALATALRASRARXXXXXXKASRKYRLLCASLAA---QASKAAHSGHYPWHRLLEETGRLRDSLKVARKGEERANRCETELAKSETRARELESDNRRLRRDLDGARLRTRQNEAKARSSLSTLRASLEDLDHEQRARCKRWRATTRSQRALLESLRRHVQRGLHSAPSFTAFQLIEQIFGCLETLESDAQLSPARRRRQRSPSAACSPPADPSPP---HRRGSPKRSPHVAAAAAGPRVTVKGLTPIP 298
BLAST of mRNA_P-lacustris_contig1006.158.1 vs. uniprot
Match: A0A6H5L3T3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3T3_9PHAE) HSP 1 Score: 277 bits (708), Expect = 1.030e-77 Identity = 184/303 (60.73%), Postives = 207/303 (68.32%), Query Frame = 1 Query: 1 GTRLFSSADDSSDSSDTSSEGWFRRAPS----ADRSSPGDVSPDKLALPALAAALRASRARTAAAQAKASRKMGILMSYLYVSHGQQRAGAYSSNHLLHRLLEETARLRDSLKVARGGEDRANRCEIDLAKSEVRVRELERDNRRLRRELEGARLRNRQAEAKARSSLSSLKTTLEDLEQDQGARCKRLRATTRSQRALLESLRRHVQRGYHTAPSFTTFQLMEQIFECLKSLESDAKFSPTRRRPHXXXXXXXXXXXXXXXXAASVKRGCPRRT-HSPAAAAAA-PRFLTEGVPLPPPGTTS 891
GTR+FSS DDSSDSSDTSSE W R+P R S GDVSP KLALPALA ALRASRAR AAAQAKASR LLEET RLRD+LKVAR GE+RANRCE +LAKSE R RELE DNRR+RR+L+GARLRNRQ EAKARSSLS L+T+LE LEQ+Q ARCKR RATTRSQRALLESLRRHVQRG+H+APSFT FQL+EQIF CLK+LESDA+ SP RRR + G P+R+ H+ AAAAA PR +G+ P P + S
Sbjct: 9 GTRMFSSVDDSSDSSDTSSECWNPRSPGEHSIGSRPSGGDVSPSKLALPALATALRASRARAAAAQAKASR-----------------------------LLEETGRLRDALKVARKGEERANRCETELAKSEARARELESDNRRIRRDLDGARLRNRQNEAKARSSLSILRTSLEGLEQEQRARCKRWRATTRSQRALLESLRRHVQRGHHSAPSFTAFQLIEQIFGCLKTLESDAQLSPARRRQRSPSAACSPLTDPSPPR----RGGSPKRSPHAAVAAAAAGPRVTVKGL-TPTPSSVS 277 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1006.158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1006.158.1 >prot_P-lacustris_contig1006.158.1 ID=prot_P-lacustris_contig1006.158.1|Name=mRNA_P-lacustris_contig1006.158.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=303bp MGILMSYLYVSHGQQRAGAYSSNHLLHRLLEETARLRDSLKVARGGEDRAback to top mRNA from alignment at P-lacustris_contig1006:60977..66704+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1006.158.1 ID=mRNA_P-lacustris_contig1006.158.1|Name=mRNA_P-lacustris_contig1006.158.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=5728bp|location=Sequence derived from alignment at P-lacustris_contig1006:60977..66704+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1006:60977..66704+ >mRNA_P-lacustris_contig1006.158.1 ID=mRNA_P-lacustris_contig1006.158.1|Name=mRNA_P-lacustris_contig1006.158.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1818bp|location=Sequence derived from alignment at P-lacustris_contig1006:60977..66704+ (Pleurocladia lacustris SAG_25_93)back to top |