mRNA_P-lacustris_contig1006.157.1 (mRNA) Pleurocladia lacustris SAG_25_93
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1006.157.1 vs. uniprot
Match: D7FN23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN23_ECTSI) HSP 1 Score: 412 bits (1060), Expect = 4.660e-142 Identity = 228/304 (75.00%), Postives = 263/304 (86.51%), Query Frame = 1 Query: 7 AVVTMQRLARGLLARNRVAGRRQAVASLRIACLGVAMDVIEAYIREDVAPDIVSDVLNEGFEGQELGAAPRAEAAAAAHAILEETTSSLIRRLVSLAVTEEADSHLDVVYVRDRRNPLLATVDDLVSETLRVWLRKVVEEVVKEGAEDILFGRRIFVLVEAVLEEGIVEAVRPVAYEVYHSAMALAAFVGIEEELCAEEAKLVVAETMAPFENQLVALQKEKDLAAIQAAAQTVIVKELQLQHAARTVGQRGRLVIMSVINGKALNLLLAGRFLAILRASEANRLQVATSPLLFMLFRRLVVRY 918
A+VT+QR+ARG+ ARNRVAGRR AV LR ACLGVAM++IEAYIREDVAPD++SD L GFEG + RAEAA+AAHAI+EET +SLIR LVS+ + EEADSHLDVVYVRDRRNPLLATVDDLVSE LRVW+R+ V EVVKE AE+ LFG+RI VLVE VLEEG+VEAV P+A EVY++A ALA+F+ IEEELC+ EA+ VV+ETMAPFE+QL+ LQ+EKD AAIQA A VIVK LQLQHAARTVGQRG+LV MS I+GK LNLLLAGRFL+ILRA+E NRLQV+TSPLLFMLFRRLVVRY
Sbjct: 3 AIVTVQRIARGIAARNRVAGRRIAVEMLRTACLGVAMEIIEAYIREDVAPDVISDALGVGFEGVHSVVSQRAEAASAAHAIMEETAASLIRGLVSMTLAEEADSHLDVVYVRDRRNPLLATVDDLVSEALRVWMREAVTEVVKECAEEFLFGKRISVLVETVLEEGVVEAVWPIASEVYYNAAALASFLEIEEELCSNEARSVVSETMAPFEDQLIELQREKDFAAIQATAYGVIVKGLQLQHAARTVGQRGKLVAMSDIHGKTLNLLLAGRFLSILRAAETNRLQVSTSPLLFMLFRRLVVRY 306 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1006.157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1006.157.1 >prot_P-lacustris_contig1006.157.1 ID=prot_P-lacustris_contig1006.157.1|Name=mRNA_P-lacustris_contig1006.157.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=310bp MQRLARGLLARNRVAGRRQAVASLRIACLGVAMDVIEAYIREDVAPDIVSback to top mRNA from alignment at P-lacustris_contig1006:51626..57478- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1006.157.1 ID=mRNA_P-lacustris_contig1006.157.1|Name=mRNA_P-lacustris_contig1006.157.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=5853bp|location=Sequence derived from alignment at P-lacustris_contig1006:51626..57478- (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1006:51626..57478- >mRNA_P-lacustris_contig1006.157.1 ID=mRNA_P-lacustris_contig1006.157.1|Name=mRNA_P-lacustris_contig1006.157.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1860bp|location=Sequence derived from alignment at P-lacustris_contig1006:51626..57478- (Pleurocladia lacustris SAG_25_93)back to top |