mRNA_P-lacustris_contig1005.153.1 (mRNA) Pleurocladia lacustris SAG_25_93
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-lacustris_contig1005.153.1 vs. uniprot
Match: A0A6H5K7Y7_9PHAE (Signal peptidase complex subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K7Y7_9PHAE) HSP 1 Score: 349 bits (895), Expect = 5.690e-121 Identity = 169/183 (92.35%), Postives = 174/183 (95.08%), Query Frame = 1 Query: 1 DEDELIVPQSVETGDTVKMKQVMDDAVIKAVLEMGYEEDHTLNNAKLAVMALACMFAVTAQFWPQPFPESRPLLAVCCASYFACSFGLHLIVTYWEKDLILATARSSGRSMGKGIFVRTDFPRFDEIYTVSVEERKLGSKPIEEQWNVGNYFDVEGNFDEWGMGDAVKKLVTKLEKRARDKKK 549 DEDELIVPQSVETGDTVKMKQ+MDDAVIKAVLEMGYEEDHTLNNAKLAVMALAC+FAVTAQFWPQPFPESR LLAVCC SYF CSFGLHLIVTYWEKDLILAT RSS RS+GKGIFVRTDFPRFDEIYTVSVEERK GSKPIEEQW+VG YFD EGNFDEWGMGDAVK LVT+LEKRARDKKK Sbjct: 2 DEDELIVPQSVETGDTVKMKQIMDDAVIKAVLEMGYEEDHTLNNAKLAVMALACVFAVTAQFWPQPFPESRALLAVCCFSYFTCSFGLHLIVTYWEKDLILATKRSSSRSLGKGIFVRTDFPRFDEIYTVSVEERKPGSKPIEEQWHVGKYFDYEGNFDEWGMGDAVKNLVTRLEKRARDKKK 184
BLAST of mRNA_P-lacustris_contig1005.153.1 vs. uniprot
Match: K8YV93_NANGC (Signal peptidase complex subunit 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YV93_NANGC) HSP 1 Score: 172 bits (435), Expect = 7.610e-51 Identity = 87/181 (48.07%), Postives = 126/181 (69.61%), Query Frame = 1 Query: 7 DELIVPQSVETGDTVKMKQVMDDAVIKAVLEMGYEEDHTLNNAKLAVMALACMFAVTAQFWPQPFPESRPLLAVCCASYFACSFGLHLIVTYWEKDLILATA--RSSGRSMGKGIFVRTDFPRFDEIYTVSVEERKLGSKP-IEEQWNVGNYFDVEGNFDEWGMGDAVKKLVTKLEKRARD 540 DE P ++TGD +K+KQV+D+AV+KA+++ GYEE+ +N KLA+M +AC+FA+ AQF+P PFPESRPLL VCC +YF S + LIV+Y E+D IL T RS G++ G+ + VRT FPRF + YTV VEE + P + ++++G FD EGNF E G+ V++L+ + +K+ D Sbjct: 13 DEEEEPLHIDTGDQMKVKQVLDEAVVKAIVDAGYEENFFYDNIKLALMVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGKA-GEALKVRTQFPRFQDEYTVFVEEAGMQDPPTVSSKFSIGKVFDEEGNFYEEGLAREVQRLLDRYKKQMWD 192
BLAST of mRNA_P-lacustris_contig1005.153.1 vs. uniprot
Match: A0A7S3V7R4_9STRA (Signal peptidase complex subunit 2 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V7R4_9STRA) HSP 1 Score: 161 bits (407), Expect = 1.740e-46 Identity = 88/198 (44.44%), Postives = 120/198 (60.61%), Query Frame = 1 Query: 1 DEDELIVPQSVETGDTVKMKQVMDDAVIKAVLE-------------MGYEEDHTLNNAKLAVMALACMFAVTAQFWPQPFPESRPLLAVCCASYFACSFGLHLIVTYWEKDLILATARSSGR--------SMGK-GIFVRTDFPRFDEIYTVSVEERKLGSKP-IEEQWNVGNYFDVEGNFDEWGMGDAVKKLVTKLE 525 +E+E +V V+TGD +K+KQ++D+ V LE +G EDH L+N KL +MA+AC FA+ AQF P PFP RP+L VCCA YF+ S L LI T+ +KD IL T G+ ++ K G+ VRT FPRF E YTV +E L + P +++ W+VG +FD EG FDE+G+ AV+KL K E Sbjct: 9 EEEEEVVLLQVDTGDIIKLKQILDETVANTFLEENTLEGHDSRAKNIGLHEDHRLSNIKLILMAVACAFAMVAQFSPLPFPNCRPILGVCCAVYFSLSGVLQLITTFLDKDCILITKALEGKPAVVKNNPNLAKYGLRVRTIFPRFSEFYTVRIEFEGLENSPFVKDTWSVGEFFDKEGMFDEYGLQYAVEKLYRKFE 206
BLAST of mRNA_P-lacustris_contig1005.153.1 vs. uniprot
Match: A0A8J2SMV2_9STRA (Signal peptidase complex subunit 2 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SMV2_9STRA) HSP 1 Score: 159 bits (403), Expect = 2.540e-46 Identity = 77/170 (45.29%), Postives = 114/170 (67.06%), Query Frame = 1 Query: 25 QSVETGDTVKMKQVMDDAVIKAVLEMGYEEDHTLNNAKLAVMALACMFAVTAQFWPQPFPESRPLLAVCCASYFACSFGLH-LIVTYWEKDLILATARSSGRSMGKGIFVRTDFPRFDEIYTVSVEERKLGSKPIEEQWNVGNYFDVEGNFDEWGMGDAVKKLVTKLEKR 531 Q ++TGD++K+KQ++D+A +KAVL GY+E H ++N K+++M +AC+FA AQF P PFP+ RP+L VCC YF S G+H L+V Y E+D++L T + G+ VRTDFP+F +++T+ VE + P EE+ VG +FD G F E G D V+K+V K E + Sbjct: 18 QHIDTGDSLKVKQILDEATVKAVLAKGYDEVHFIDNLKISLMIIACLFACAAQFNPIPFPKVRPILGVCCGGYFVFS-GIHQLVVKYVERDIVLITKPKNAEH---GLRVRTDFPKFQDLFTIIVEYDTPDAPPYEEKHCVGKFFDTGGYFWEAGFADTVQKMVAKFESK 183
BLAST of mRNA_P-lacustris_contig1005.153.1 vs. uniprot
Match: A0A7S1Y7Q9_9STRA (Signal peptidase complex subunit 2 n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y7Q9_9STRA) HSP 1 Score: 159 bits (402), Expect = 1.140e-45 Identity = 85/179 (47.49%), Postives = 113/179 (63.13%), Query Frame = 1 Query: 31 VETGDTVKMKQVMDDAVIKAVLEMGYEEDHTLNNAKLAVMALACMFAVTAQFWPQPFPESRPLLAVCCASYFACSFGLHLIVTYWEKDLILATARSSGRSMGK-------GIFVRTDFPRFDEIYTVSVEERKL-GSKPIEEQWNVGNYFDVEGNFDEWGMGDAVKKLVTKLEKRARDK 543 V+ GD +K+KQ++D+ AVLE +ED L+N KLA+M LAC+FA AQF P PFP+SRP+L +CC YF S L IVT+ +KD IL T + R+ GI VRTD PRF E Y V +E K+ + + + W+VGN+FDV+G FDE GM +AV+ L +LEK DK Sbjct: 31 VDVGDVIKLKQILDETTSAAVLEFQ-KEDFRLDNMKLAIMTLACLFACLAQFAPIPFPDSRPVLGICCCIYFVLSGVLQAIVTFLDKDCILITKPTDARAQKSNPNLHQYGIRVRTDLPRFSEYYKVILEFEKMPNTVKVVQTWSVGNFFDVDGYFDEIGMTEAVQGLYKRLEKGEYDK 208
BLAST of mRNA_P-lacustris_contig1005.153.1 vs. uniprot
Match: A0A7R9Z7Z3_9STRA (Signal peptidase complex subunit 2 n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z7Z3_9STRA) HSP 1 Score: 157 bits (397), Expect = 1.930e-44 Identity = 82/178 (46.07%), Postives = 120/178 (67.42%), Query Frame = 1 Query: 31 VETGDTVKMKQVMDDAVIKAVLEM-GYEEDHTLNNAKLAVMALACMFAVTAQFWPQPFPESRPLLAVCCASYFACSFGLHLIVTYWEKDLILAT-----ARSSGRS-MGK-GIFVRTDFPRFDEIYTVSVE-ERKLG---SKP-IEEQWNVGNYFDVEGNFDEWGMGDAVKKLVTKLE 525 V+ GD VK+KQ++D+ V L+ EDHT++N KL++MALAC FA+ AQF P PFP+SRP+L CCA+YF S L L+ T+W+KD I+ T A++ S M K G+ +RT PRF E YTV +E ++K G ++P ++E W+VG +FDVEG FDE+G+ + +++L + E Sbjct: 47 VDVGDVVKLKQILDETVAGTFLDKCSLVEDHTVDNIKLSIMALACTFAMVAQFAPLPFPDSRPVLGGCCAAYFVLSGFLQLVTTFWDKDCIMVTKAVEKAKNQKNSDMEKYGLRIRTSLPRFSEFYTVIIEFQKKYGDGENRPYVKETWSVGQFFDVEGMFDEYGLENEIEELYERFE 224
BLAST of mRNA_P-lacustris_contig1005.153.1 vs. uniprot
Match: A0A835ZBL5_9STRA (Signal peptidase complex subunit 2 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBL5_9STRA) HSP 1 Score: 153 bits (386), Expect = 7.380e-43 Identity = 82/197 (41.62%), Postives = 117/197 (59.39%), Query Frame = 1 Query: 22 PQSVETGDTVKMKQVMDDAVIKAVLEMGYEEDHTLNNAKLAVMALACMFAVTAQFWPQPFPESRPLLAVCCASYFACSFGLHLIVTYWEKDLILATARSSGRSMGKGIFVRTDFPRFDEIYTVSVE------------------------------ERKLGSKPIEE---QWNVGNYFDVEGNFDEWGMGDAVKKLV 513 P V+TGD++K+KQ MD+AV++AV++MG+EEDH +N KL +M +AC FA AQ +P+PFPESRP+LAVCC SYFACS L ++++ E+D+IL T ++ G + +RT FPRF EIYT +E ++ G ++ + NVGNYFDVEG E G+ + + K V Sbjct: 53 PSKVDTGDSLKVKQAMDEAVVRAVMDMGFEEDHKWSNVKLLLMVVACAFAGLAQLYPKPFPESRPVLAVCCISYFACSALLQVVMSCIEQDVILITKPNN---KGVALRIRTAFPRFQEIYTTEIEVLAGAASKHATKLQLELMPLITSFLPISIGRKQPGDAATKDGAVKMNVGNYFDVEGYXXEEGVVEDMAKAV 246
BLAST of mRNA_P-lacustris_contig1005.153.1 vs. uniprot
Match: A0A7S1GHQ4_CYCTE (Signal peptidase complex subunit 2 n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GHQ4_CYCTE) HSP 1 Score: 152 bits (385), Expect = 8.380e-43 Identity = 82/186 (44.09%), Postives = 120/186 (64.52%), Query Frame = 1 Query: 1 DEDELIVPQSVETGDTVKMKQVMDDAVIKAVLEMGYEEDHTLNNAKLAVMALACMFAVTAQFWPQPFPESRPLLAVCCASYFACSFGLHLIVTYWEKDLILATAR---SSGRSMGK-GIFVRTDFPRFDEIYTVSVEERKLGSKP-IEEQWNVGNYFDVEGNFDEWGMGDAVKKLVTKLEKRARDK 543 D++EL + Q V+ GD VK+KQ++D+ V +LE +ED+ ++NAKL +M AC+FA+ AQF P PFP+SRP+L CC YF S L I T+ +KD IL T S ++ K G+ VR+ PRF E YT+++E + P +E++W+VGN+FDV+G FDE G+ AV+ + +LE DK Sbjct: 52 DDEELELLQ-VDVGDMVKLKQILDETVASTILE-NVKEDYRIDNAKLGIMTAACVFAMIAQFAPIPFPDSRPVLGACCCIYFILSGVLQFITTFIDKDCILRTKALPPSGNTNLQKYGLRVRSSLPRFSEFYTLTIEFHGMPETPHVEQKWSVGNFFDVDGMFDEVGLMQAVQDVYKRLEGGQYDK 235
BLAST of mRNA_P-lacustris_contig1005.153.1 vs. uniprot
Match: W7TQC5_9STRA (Signal peptidase complex subunit 2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQC5_9STRA) HSP 1 Score: 149 bits (375), Expect = 1.800e-42 Identity = 74/141 (52.48%), Postives = 101/141 (71.63%), Query Frame = 1 Query: 7 DELIVPQSVETGDTVKMKQVMDDAVIKAVLEMGYEEDHTLNNAKLAVMALACMFAVTAQFWPQPFPESRPLLAVCCASYFACSFGLHLIVTYWEKDLILATA--RSSGRSMGKGIFVRTDFPRFDEIYTVSVEERKLGSKP 423 DE P ++TGD +K+KQV+D+AV+KA+++ GYEE+ +N KLA+M +AC+FA+ AQF+P PFPESRPLL VCC +YF S + LIV+Y E+D IL T RS G++ G+ + VRT FPRF + YTV VEE + P Sbjct: 13 DEEEEPLHIDTGDQMKVKQVLDEAVVKAIVDAGYEENFFYDNIKLALMVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGKA-GEALKVRTQFPRFQDEYTVFVEEAGMQDPP 152
BLAST of mRNA_P-lacustris_contig1005.153.1 vs. uniprot
Match: A0A7S3M684_9STRA (Signal peptidase complex subunit 2 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M684_9STRA) HSP 1 Score: 147 bits (370), Expect = 5.080e-41 Identity = 77/168 (45.83%), Postives = 109/168 (64.88%), Query Frame = 1 Query: 22 PQSVETGDTVKMKQVMDDAVIKAVLEMGYEEDHTLNNAKLAVMALACMFAVTAQFWPQPFPESRPLLAVCCASYFACSFGLHLIVTYWEKDLILATARSSGRSMGKGIFVRTDFPRFDEIYTVSVEER-KLGSKPIEEQWNVGNYFDVEGNFDEWGMGDAVKKLVTKL 522 P ++ETGD+VK+KQV+DDA IKA+ E GY+ +++ +N KL +MAL+C+FA+ AQF+P PFP SRPLLAVCCA+YF S L I+T+ +KD IL S + + +RT FPRF E +T+ V+ + K + VG YF +G FDE + V++ V K Sbjct: 31 PFTIETGDSVKVKQVLDDAAIKAITEGGYDANYSWDNMKLLLMALSCVFAMVAQFFPIPFPASRPLLAVCCAAYFIISSVLQYIITFVDKDTILFVKPS--KECAHDMEIRTSFPRFQEYFTLIVQFKGNPNDKKTTAKMYVGRYFTEKGAFDEDAFINDVRRHVQKF 196 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1005.153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1005.153.1 >prot_P-lacustris_contig1005.153.1 ID=prot_P-lacustris_contig1005.153.1|Name=mRNA_P-lacustris_contig1005.153.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=194bp DEDELIVPQSVETGDTVKMKQVMDDAVIKAVLEMGYEEDHTLNNAKLAVMback to top mRNA from alignment at P-lacustris_contig1005:64415..67512+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1005.153.1 ID=mRNA_P-lacustris_contig1005.153.1|Name=mRNA_P-lacustris_contig1005.153.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=3098bp|location=Sequence derived from alignment at P-lacustris_contig1005:64415..67512+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1005:64415..67512+ >mRNA_P-lacustris_contig1005.153.1 ID=mRNA_P-lacustris_contig1005.153.1|Name=mRNA_P-lacustris_contig1005.153.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1164bp|location=Sequence derived from alignment at P-lacustris_contig1005:64415..67512+ (Pleurocladia lacustris SAG_25_93)back to top |