mRNA_P-lacustris_contig1005.152.1 (mRNA) Pleurocladia lacustris SAG_25_93
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1005.152.1 vs. uniprot
Match: A0A6H5KBQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBQ8_9PHAE) HSP 1 Score: 607 bits (1565), Expect = 1.540e-207 Identity = 298/364 (81.87%), Postives = 312/364 (85.71%), Query Frame = 2 Query: 731 RGAGSSSNSSSISRIISSSGRSRRRGNLRAFSSQCLEGLEWEDAGVVGKSHRRERSASEPTVPQDPPRPRSSDLEDYPTDLLDCSGAPSDREHSSTLYRQYSNEASAPPPQVLQGWKMNCVALDKRSWLEVRDKQHRYGKNLRLYFKEWDRQGKPGGSFFKWLSTPEVQLEGCPRHELENDVVHYCRPEERHTYALRLQVTPEGRAMLRTARGELVNSGPNAWLFVLRDQTIFATDKKTDPPRFHHSSFFGGGYVEAAGMLVAEKGLLKTLYPHSGHYRPTNQHLRVLLTFLKGLGVDLSILQVDAQRVHKVARPDKRSSYPRVRKMDNPFMVSAMYLLDFFEAKYLAWSSRHFDELYRKVSRR 1822
RG G S+ SS +R I G RA SSQCLEGL+W D G HRRERS SEP V QDPPR DL DY TDLL CSGAPSDREHSSTLY QYSNEASAPPPQVLQGWKMNCVALDKRSWLEVRDKQHRYGKNLRLYFKEWDR+GKPGGSFFKWLS EVQLEGCPRHELE+DVVHYCRPEERH YALRL VTPEGRA+L TA+GE VN GP+AWLFVLRDQT+FAT KKTDPPRFHHSSFFGGGYVEAAGMLVAE+G+LKTLYPHSGHYRPTNQHLRVLL FL GLGVDL L+VDAQRVHKVARPDKR+SYPRVRKMDNPFMVSA YLLDFFEAKYLAWSS HFDELY KV+ R
Sbjct: 192 RGCGDSAGGSSCTRRI---------GYFRALSSQCLEGLDWGDTGA---HHRRERSGSEPRVSQDPPRSSGFDLLDYSTDLLGCSGAPSDREHSSTLYHQYSNEASAPPPQVLQGWKMNCVALDKRSWLEVRDKQHRYGKNLRLYFKEWDRRGKPGGSFFKWLSAAEVQLEGCPRHELESDVVHYCRPEERHNYALRLDVTPEGRAILHTAQGEPVNCGPSAWLFVLRDQTLFATGKKTDPPRFHHSSFFGGGYVEAAGMLVAEEGVLKTLYPHSGHYRPTNQHLRVLLKFLNGLGVDLDALEVDAQRVHKVARPDKRASYPRVRKMDNPFMVSARYLLDFFEAKYLAWSSCHFDELYLKVNER 543
BLAST of mRNA_P-lacustris_contig1005.152.1 vs. uniprot
Match: D8LDY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDY1_ECTSI) HSP 1 Score: 266 bits (680), Expect = 6.750e-82 Identity = 124/139 (89.21%), Postives = 127/139 (91.37%), Query Frame = 2 Query: 923 DPPRPRSSDLEDYPTDLLDCSGAPSDREHSSTLYRQYSNEASAPPPQVLQGWKMNCVALDKRSWLEVRDKQHRYGKNLRLYFKEWDRQGKPGGSFFKWLSTPEVQLEGCPRHELENDVVHYCRPEERHTYALRLQVTPE 1339
DPPR R DL DY TDLL SGAPSDREHSSTLY QYSNEASAPPPQVLQGWKMNCVALDKRSWLEVRDKQHRYGKNLRLYFKEWDR+GKPGGSFFKWLS EVQLEGCPRHELE+DVVHYCRPEERH YALRL VTP+
Sbjct: 4 DPPRSRGFDLLDYSTDLLGFSGAPSDREHSSTLYHQYSNEASAPPPQVLQGWKMNCVALDKRSWLEVRDKQHRYGKNLRLYFKEWDRRGKPGGSFFKWLSAAEVQLEGCPRHELESDVVHYCRPEERHNYALRLDVTPK 142
BLAST of mRNA_P-lacustris_contig1005.152.1 vs. uniprot
Match: A0A4D9DCJ4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCJ4_9STRA) HSP 1 Score: 247 bits (631), Expect = 1.540e-71 Identity = 124/273 (45.42%), Postives = 177/273 (64.84%), Query Frame = 2 Query: 1010 SSTLYRQYSNEASAPPPQVLQGW--KMNCVALDKRSWLEVRDKQHRYGKNLRLYFKEWDRQGKPGGSFFKWLSTPEVQLEGCPRHELENDVVHYCR-PEERHTYALRLQ---VTPEGRAMLRTARGELVNSGPNAWLFVLRDQTIFATDKKTD-PPRFHHSSFFGGGYVEAAGMLVAEKGLLKTLYPHSGHYRPTNQHLRVLLTFLKGLGVDLSILQVDAQRVHKVARPDKRSSYPRVRKMDNPFMVSAMYLLDFFEAKYLAWSSRHFDELYR 1807
S + R+ S + P P + + N +D+R+WLEV D++HRY KNLRLY+KEWDR+G+PG SF+ WL V+LE C R +LE + V+YC ++R + ++ + +G+A G+LV +GP+ W+FVLRD ++A +KKTD PPRFHHSSFF G V+AAG+ VA G+L+ LYPHSGHYRP++ HL LL FL+ VD++++QVD Q V KVAR + R RK+D+P+M + ++ F AK AW + FDE+ R
Sbjct: 117 SVNVPRERSQQLYVPMPAAISRTFGESNNAMIDRRAWLEVEDRKHRYAKNLRLYYKEWDRRGQPGSSFWSWLDEERVELEECSRAQLEAETVYYCSFTKDREAFEVQFDEHGLLHQGQA----GAGDLVETGPDGWIFVLRDGLVYAHEKKTDQPPRFHHSSFFAGECVQAAGLFVATGGVLERLYPHSGHYRPSDSHLLSLLLFLEAQHVDMAVMQVDVQLVMKVARSHDATKGGRRRKIDSPYMWTGLHAKYFLLAKRYAWDKKLFDEMLR 385
BLAST of mRNA_P-lacustris_contig1005.152.1 vs. uniprot
Match: W7U6C7_9STRA (Calmodulin binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6C7_9STRA) HSP 1 Score: 245 bits (625), Expect = 3.080e-69 Identity = 126/271 (46.49%), Postives = 174/271 (64.21%), Query Frame = 2 Query: 1010 SSTLYRQYSNEASAPPPQVLQGW--KMNCVALDKRSWLEVRDKQHRYGKNLRLYFKEWDRQGKPGGSFFKWLSTPEVQLEGCPRHELENDVVHYCR-PEERHTYALRLQVTPEGRAMLRTARG-ELVNSGPNAWLFVLRDQTIFATDKKTD-PPRFHHSSFFGGGYVEAAGMLVAEKGLLKTLYPHSGHYRPTNQHLRVLLTFLKGLGVDLSILQVDAQRVHKVARPDKRSSYPRVRKMDNPFMVSAMYLLDFFEAKYLAWSSRHFDELYR 1807
S + R+ S + P P + + N +D+R+WLEV D++HRY KNLRLY+KEWDR+G+PG SF+ WL V+LE C R +LE + V+YC ++R A +Q G R A +LV +GP+ W+FVLRD ++A +KKTD PPRFHHSSFF G V+AAG+ VA G+L+ LYPHSGHYRP++ HL LL FL+ VD++++QVD Q V KVAR + R RK+D+P+M + ++ F AK AW + FDE+ R
Sbjct: 241 SVNVPRERSQQLYVPMPAAISRTLGENNNAMIDRRAWLEVEDRKHRYAKNLRLYYKEWDRRGQPGSSFWSWLDEERVELEECSRAQLEAETVYYCSFTKDRE--AFEVQFDEHGLLHQRQAGAWDLVETGPDGWIFVLRDGLVYAHEKKTDQPPRFHHSSFFAGECVQAAGLFVATGGVLERLYPHSGHYRPSDSHLLSLLLFLEAQHVDMALMQVDVQLVMKVARSHDATKGGRRRKIDSPYMWTGLHAKYFLLAKRYAWDKKLFDEMLR 509
BLAST of mRNA_P-lacustris_contig1005.152.1 vs. uniprot
Match: A0A7S2SKQ1_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKQ1_9STRA) HSP 1 Score: 229 bits (583), Expect = 2.420e-62 Identity = 116/260 (44.62%), Postives = 157/260 (60.38%), Query Frame = 2 Query: 1052 PPPQVLQGWKMNCVALDKRSWLEVRDKQHRYGKNLRLYFKEWDRQGKPGGSFFKWLSTPEVQLEGCPRHELENDVVHYCRPEERHTYALRLQVTPEGRAMLRTARGELVNSGPNAWLFVLRDQTIFATDKKTDPPRFHHSSFFGGGYVEAAGMLVAEKGLLKTLYPHSGHYRPTNQHLRVLLTFLKGLGVDLSILQVDAQRVHKVARPDKRSSYPRVRKMDNPFMVSAMYLLDFFEAKYLAWSSRHFDELYRKVSRRVRS 1831
PP +V +G + LD+R+WLEV D +HRY K+LR Y++ WD +PG F WL T +L+ CPR LE D VHYC EER YA+ ++ GR R V++G W+FV+RD ++A +K+T+PPRFHHSSFF G VE AG+ VA G + ++PHSGHYRP + + LL FL +DLS ++VDAQ KVAR +R +++K D P + LL F E K+ AWS+ F+EL V RR S
Sbjct: 241 PPDEVTRGLREGFSQLDRRAWLEVLDPKHRYAKHLRAYYQAWDLLDRPGSDFLSWLDTAGFELDSCPRSVLEADTVHYCSEEEREQYAIDIE---GGRVWFRGGDRRPVDTGSKGWIFVVRDGVVYAAEKRTEPPRFHHSSFFSGQCVEVAGLFVARDGWVCRVFPHSGHYRPGDTQIMHLLKFLDQRHLDLSSVEVDAQHTMKVARLLRREGN-KMKKTDCPHFMRGDALLHFLERKFSAWSTPLFNEL---VERRTHS 493
BLAST of mRNA_P-lacustris_contig1005.152.1 vs. uniprot
Match: A0A8K1C508_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C508_PYTOL) HSP 1 Score: 220 bits (560), Expect = 4.330e-62 Identity = 119/260 (45.77%), Postives = 166/260 (63.85%), Query Frame = 2 Query: 1058 PQVLQGWKM-NCVALDKRSWLEVRDKQHRYGKNLRLYFKEWDRQG-KPGGSFFKWLSTPEVQLEGCPRHELENDVVHYCRPE-ERHTYALRLQVTPEGRAMLRTARGELVNSGPNAWLFVLRDQTIFATDKKTDP-PRFHHSSFFGGGYVEAAGMLVAEKGLLKTLYPHSGHYRPTNQHLRVLLTFLKGLGVDLSILQVDAQRVHKVARPDKRSSYPRVRKMDNPFMVSAMYLLDFFEAKYLAWSSRHFDELYRKVSRRV 1825
P++++G+ N +DK+SWLEV D++HRYG NLR Y+KEW RQ KP SF++WL V++EG PR +LE + V YC + ER +AL ++ GR + A E+V SG + W+FVLRD ++ + K+T PR HH+SF GG V+ AGM+V G+++T+YPHSGHYRP+ L VLL FL GVDL+ ++VD QR+ KV R S VRK+DN +A +L F E K+LAW FDEL V+ ++
Sbjct: 13 PKLVKGYSAGNISVVDKKSWLEVCDRKHRYGANLRAYYKEWKRQAAKP--SFWEWLDDESVEVEGVPRTKLERETVLYCDTDAERQKFALTIR---HGR-IYHMASQEIVQSGEDGWIFVLRDGVLYGSQKETKKNPRIHHTSFVGGECVQTAGMMVINDGIIETIYPHSGHYRPSEHELLVLLRFLVAQGVDLTDVKVDVQRIQKVFRSSINGSL--VRKIDNAHFWNAYRVLYFLEQKHLAWKIGFFDELVDTVAEKL 264
BLAST of mRNA_P-lacustris_contig1005.152.1 vs. uniprot
Match: A0A484DTR1_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DTR1_BRELC) HSP 1 Score: 214 bits (546), Expect = 6.880e-60 Identity = 114/261 (43.68%), Postives = 162/261 (62.07%), Query Frame = 2 Query: 1058 PQVLQGWKM-NCVALDKRSWLEVRDKQHRYGKNLRLYFKEWDRQG----KPGGSFFKWLSTPEVQLEGCPRHELENDVVHYCRP-EERHTYALRLQVTPEGRAMLRTARGELVNSGPNAWLFVLRDQTIFATDKKTDP-PRFHHSSFFGGGYVEAAGMLVAEKGLLKTLYPHSGHYRPTNQHLRVLLTFLKGLGVDLSILQVDAQRVHKVARPDKRSSYPRVRKMDNPFMVSAMYLLDFFEAKYLAWSSRHFDELYRKVSR 1819
P++++G+ N +DK+SWLEV D++HRYG NLR Y+KEW RQ KP SF++WL +++ G PR +LE + V YC ER +AL +Q ++ A ++V++GP+ W+FVLRDQ ++ + K+T PR HH+SF GG V+ AGM+V G++KT+YPHSGHYRP+ L VLL FL GVDLS + VD QR+ KV R + V+K+DN +A + + E+K+ AW FDEL V R
Sbjct: 29 PKLVKGYSAGNISVVDKKSWLEVCDRKHRYGANLRAYYKEWKRQPMEPTKP--SFWEWLDDESIEVAGVPRTKLERETVLYCDTVAERQQFALMVQ----NGVIVHVASQQIVDTGPDGWIFVLRDQVLYGSQKETKKIPRIHHTSFVGGECVQTAGMMVITDGVIKTIYPHSGHYRPSEYELLVLLRFLVNNGVDLSNVNVDVQRIQKVYRQSLNGTL--VKKLDNAHFWNAYRVWHYLESKHRAWKVGLFDELAETVGR 281
BLAST of mRNA_P-lacustris_contig1005.152.1 vs. uniprot
Match: A0A1V9Y7I8_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y7I8_9STRA) HSP 1 Score: 213 bits (543), Expect = 1.280e-59 Identity = 111/257 (43.19%), Postives = 157/257 (61.09%), Query Frame = 2 Query: 1058 PQVLQGWKM-NCVALDKRSWLEVRDKQHRYGKNLRLYFKEWDRQGKPGGSFFKWLSTPEVQLEGCPRHELENDVVHYCRPEERHTYALRLQVTPEGRAMLRTARGELVNSGPNAWLFVLRDQTIFATDK-KTDPPRFHHSSFFGGGYVEAAGMLVAEKGLLKTLYPHSGHYRPTNQHLRVLLTFLKGLGVDLSILQVDAQRVHKVARPDKRSSYPRVRKMDNPFMVSAMYLLDFFEAKYLAWSSRHFDELYRKVSRR 1822
P +++G+ N +DKRSWLEV D++HRYG NLR Y+KEW R P F++WL V++EG PR +LE++ V YC ER +AL G + T + + V++ + W+FVLRD ++ +K T PR HH+S GG V+ AGM+V KG+L +YPHSGHYRP+ + VLL FLK G+ L + VD QR+ KV+R +RS +V+K++N +A LDF E K W S F EL R+V++R
Sbjct: 23 PVLVKGFSSGNIAVVDKRSWLEVCDRKHRYGANLRAYYKEWKRYEGPKPGFWEWLDDESVEVEGVPRTKLESETVLYCDKAERQKFALNFL---HGMLVTSTTQ-QPVDTADDGWIFVLRDGVLYGNEKVTTQVPRIHHTSLSGGECVQTAGMMVVTKGILNIIYPHSGHYRPSENEVLVLLRFLKSHGIVLENVLVDVQRIQKVSR--ERSDNVKVKKLENAHFWNAQQALDFLELKDFVWHSDLFTELERRVAQR 273
BLAST of mRNA_P-lacustris_contig1005.152.1 vs. uniprot
Match: M4B446_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B446_HYAAE) HSP 1 Score: 213 bits (541), Expect = 1.860e-59 Identity = 115/261 (44.06%), Postives = 160/261 (61.30%), Query Frame = 2 Query: 1058 PQVLQGWKM-NCVALDKRSWLEVRDKQHRYGKNLRLYFKEWDRQG----KPGGSFFKWLSTPEVQLEGCPRHELENDVVHYC-RPEERHTYALRLQVTPEGRAMLRTARGELVNSGPNAWLFVLRDQTIFATDKKTDP-PRFHHSSFFGGGYVEAAGMLVAEKGLLKTLYPHSGHYRPTNQHLRVLLTFLKGLGVDLSILQVDAQRVHKVARPDKRSSYPRVRKMDNPFMVSAMYLLDFFEAKYLAWSSRHFDELYRKVSR 1819
P++++G+ N +DK+SWLEV D++HRYG NLR Y+KEW RQ KP SF++WL +++ G PR +LE + V YC ER +AL +Q ++R + E+V +GP+ W+FVLRD ++ K+T PR HH+SF GG V+ AGM+V G++KT++PHSGHYRP+ L VLL FL GVDLS + VD QR+ KV R + VRK+DN +A + F E K+LAW FDEL V +
Sbjct: 13 PKLVKGYSAGNISVVDKKSWLEVCDRKHRYGANLRAYYKEWKRQPMEPMKP--SFWEWLDDESIEVAGVPRTKLERETVLYCDTAAERQKFALSVQ----NGVIVRDSGQEIVETGPDGWIFVLRDGVLYGCQKETKKIPRIHHTSFVGGECVQTAGMMVITGGVIKTIFPHSGHYRPSEYELLVLLRFLVKNGVDLSAVDVDVQRIQKVYRESVNGTL--VRKLDNAHFWNAYRVWYFLEEKHLAWKIGLFDELVETVGK 265
BLAST of mRNA_P-lacustris_contig1005.152.1 vs. uniprot
Match: H3GBS3_PHYRM (Uncharacterized protein n=18 Tax=Phytophthora TaxID=4783 RepID=H3GBS3_PHYRM) HSP 1 Score: 213 bits (541), Expect = 2.410e-59 Identity = 114/262 (43.51%), Postives = 160/262 (61.07%), Query Frame = 2 Query: 1058 PQVLQGWKM-NCVALDKRSWLEVRDKQHRYGKNLRLYFKEWDRQG----KPGGSFFKWLSTPEVQLEGCPRHELENDVVHYC-RPEERHTYALRLQVTPEGRAMLRTARGELVNSGPNAWLFVLRDQTIFATDKKTDP-PRFHHSSFFGGGYVEAAGMLVAEKGLLKTLYPHSGHYRPTNQHLRVLLTFLKGLGVDLSILQVDAQRVHKVARPDKRSSYPRVRKMDNPFMVSAMYLLDFFEAKYLAWSSRHFDELYRKVSRR 1822
P++++G+ N +DK+SWLEV D++HRYG NLR Y+KEW RQ KP SF++WL +++ G PR +LE + V YC ER +AL +Q ++ E+V +GP+ W+FVLRD ++ + K+T PR HH+SF GG V+ AGM+V G++KT+YPHSGHYRP+ L VLL FL GVDLS + VD QR+ KV R + V+K+DN +A + F E K+LAW FDEL V ++
Sbjct: 13 PKLVKGYSAGNISVVDKKSWLEVCDRKHRYGANLRAYYKEWKRQPMEPTKP--SFWEWLDDESIEVAGVPRTKLERETVLYCDTAAERQKFALSVQ----NGEIVHDVSQEIVETGPDGWIFVLRDGVLYGSQKETKKIPRIHHTSFVGGECVQTAGMMVIMDGIIKTIYPHSGHYRPSEYELLVLLRFLVNNGVDLSDVDVDVQRIQKVFRDTVNGAL--VKKLDNAHFWNAYRVWHFLEEKHLAWKIGLFDELVETVGQK 266 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1005.152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1005.152.1 >prot_P-lacustris_contig1005.152.1 ID=prot_P-lacustris_contig1005.152.1|Name=mRNA_P-lacustris_contig1005.152.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=410bp MSFLSFCDRCEFSVLLGRGAGSSSNSSSISRIISSSGRSRRRGNLRAFSSback to top mRNA from alignment at P-lacustris_contig1005:54081..62805- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1005.152.1 ID=mRNA_P-lacustris_contig1005.152.1|Name=mRNA_P-lacustris_contig1005.152.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=8725bp|location=Sequence derived from alignment at P-lacustris_contig1005:54081..62805- (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1005:54081..62805- >mRNA_P-lacustris_contig1005.152.1 ID=mRNA_P-lacustris_contig1005.152.1|Name=mRNA_P-lacustris_contig1005.152.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2460bp|location=Sequence derived from alignment at P-lacustris_contig1005:54081..62805- (Pleurocladia lacustris SAG_25_93)back to top |