mRNA_P-lacustris_contig1004.147.1 (mRNA) Pleurocladia lacustris SAG_25_93
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1004.147.1 vs. uniprot
Match: D7FLU6_ECTSI (PAP_fibrillin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLU6_ECTSI) HSP 1 Score: 454 bits (1169), Expect = 4.250e-153 Identity = 240/295 (81.36%), Postives = 265/295 (89.83%), Query Frame = 1 Query: 1 MRLQACLAAVAATANICGAFVPALLRCRDDVRGESSVLVPSSCRANASPLRSSA---ADAIDAFPSDVSPDFENA-PAGKFGFSLANELLQTVLSGVGEGYIPYSEADKSAIEELVVELETSPGQGTEVEFPRDLDRLDGRWRLIFTNNLVGLGKFSPVELRDVYQVVDSSAGLVNNVVYATMSPPLFSETWGKLGERVAGLAKTIEERITFPVDFNIQHNFEVSSRSKPAQIELVQKELKLMNAEDDAKRSVALPALQPLAKAAAGRFDTTYLDQDIRISRGRFGELRVFQREA 873
M+LQACLAA+AAT N CGAFVPAL+ CRD VR + PSS ASPLRSS+ ADA+DAFPSDVSPD ++ P GFSLANELLQTVLSGVGEGYIPYSEADKSAIEELVVELETS GQGTEV+FPRDL +LDGRWRL+FTNNLVGLG+ SPVELRDVYQVVDS+AGLV+NVVYATMSPPLFSETWG+LGER A +A+T+E+R+TFPV+FNIQHNFEVSS+SKPAQIELVQKELKLMNAED AKRS+ALPALQPLAKAAAGRFDTTYLDQD+R+SRGRFGELRVFQREA
Sbjct: 1 MKLQACLAALAATVNTCGAFVPALVSCRDGVRASHAHHRPSS----ASPLRSSSSSPADAVDAFPSDVSPDASSSTPPASGGFSLANELLQTVLSGVGEGYIPYSEADKSAIEELVVELETSSGQGTEVQFPRDLGKLDGRWRLVFTNNLVGLGRLSPVELRDVYQVVDSAAGLVSNVVYATMSPPLFSETWGRLGERAAEIARTVEDRVTFPVNFNIQHNFEVSSQSKPAQIELVQKELKLMNAEDAAKRSLALPALQPLAKAAAGRFDTTYLDQDVRVSRGRFGELRVFQREA 291
BLAST of mRNA_P-lacustris_contig1004.147.1 vs. uniprot
Match: A0A836CAZ2_9STRA (PAP_fibrillin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAZ2_9STRA) HSP 1 Score: 218 bits (556), Expect = 4.480e-62 Identity = 111/236 (47.03%), Postives = 162/236 (68.64%), Query Frame = 1 Query: 169 AIDAFPSDVSPDFENAPAGKFGFSL--ANELLQTVLSGVGEGYIPYSEADKSAIEELVVELETSPGQGTEVEFPRDLDRLDGRWRLIFTNNLVGLGKFSPVELRDVYQVVDSSAGLVNNVVYATMSPPLFSETWGKLG-ERVAGLAKTIEERITFPVDFNIQHNFEVSSRSKPAQIELVQKELKLMNAEDDAKRSVALPALQPLAKAAAGRFDTTYLDQDIRISRGRFGELRVFQR 867
A+ A VS D++ + + + L + LL + SGVG+GY S + I++ +V+LETS G V+FP D LDGRW+L++++N+ G+G+ SP+ L +VYQVVD++ + NVVYAT+SPPLF TWG+ + VA AK + ERI+FPVDF + H FE++S PAQ+++ KE K++N E +RS+A+PA++PLA+ AG+FDTTY+D D+RISRG GE+RVFQR
Sbjct: 34 AVGALTMQVSYDYQGSSSSAYEDKLDAKSALLSAIGSGVGKGYYMTSRSAAKDIKKAIVDLETS-GADMAVKFPSDFATLDGRWKLLYSSNIFGVGRLSPLTLDEVYQVVDTAGNSIKNVVYATLSPPLFETTWGRFPVQAVANAAKRVNERISFPVDFALDHTFEITSAEYPAQLKIALKETKIVNCEKPEQRSLAVPAIRPLAQIGAGKFDTTYMDDDLRISRGTLGEIRVFQR 268
BLAST of mRNA_P-lacustris_contig1004.147.1 vs. uniprot
Match: A9SHV7_PHYPA (Predicted protein (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SHV7_PHYPA) HSP 1 Score: 77.0 bits (188), Expect = 2.060e-12 Identity = 66/218 (30.28%), Postives = 101/218 (46.33%), Query Frame = 1 Query: 256 LQTVLSGVGEGYIPYSEADKSAIEELVVELETSPGQGTEVEFPRDLDRLDGRWRLIFTNNLVG-----------LGKFSPVELRDVYQVVDSSAGLVNNVVYATMSPPLFSETWGKLGERVAGLAKTIEERITFPVDFNIQHNFEVSSRSKPAQIELVQKELKLMNAEDDAKRSVALPA---LQPLAKAAAGRFDTTYLDQDIRISRGRFGELRVFQR 867
+Q++++G+ G + + D++A + +LE + G VE PRDLD L GRWRL+FT+ +G+ P+ L VYQ +D ++ ++N+V + P W +E T + H FEV+S S +I + +K P L+ + + G FDTTYLD D RISRG GELR+F R
Sbjct: 5 MQSIIAGLDRGLLATAN-DETAADAAARKLEAA---GDAVELPRDLDLLQGRWRLVFTSGFATGSLGGERPGPPVGRLLPLTLGQVYQRIDVASKELDNIVDLRVGTP-----WP---------LPPVEVTAT------LAHTFEVTS-SNSIRIVFDKTTVKPTGGLSQLPSFDTPPLPEFLRQPSNSRGGSFDTTYLDSDFRISRGDRGELRIFVR 197
BLAST of mRNA_P-lacustris_contig1004.147.1 vs. uniprot
Match: A0A2K1JV15_PHYPA (PAP_fibrillin domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JV15_PHYPA) HSP 1 Score: 77.8 bits (190), Expect = 5.410e-12 Identity = 70/224 (31.25%), Postives = 104/224 (46.43%), Query Frame = 1 Query: 238 SLANELLQTVLSGVGEGYIPYSEADKSAIEELVVELETSPGQGTEVEFPRDLDRLDGRWRLIFTNNLVG-----------LGKFSPVELRDVYQVVDSSAGLVNNVVYATMSPPLFSETWGKLGERVAGLAKTIEERITFPVDFNIQHNFEVSSRSKPAQIELVQKELKLMNAEDDAKRSVALPA---LQPLAKAAAGRFDTTYLDQDIRISRGRFGELRVFQR 867
SL ELL ++++G+ G + + D++A + +LE + G VE PRDLD L GRWRL+FT+ +G+ P+ L VYQ +D ++ ++N+V + P W +E T + H FEV+S S +I + +K P L+ + + G FDTTYLD D RISRG GELR+F R
Sbjct: 89 SLKTELL-SIIAGLDRGLLATAN-DETAADAAARKLEAA---GDAVELPRDLDLLQGRWRLVFTSGFATGSLGGERPGPPVGRLLPLTLGQVYQRIDVASKELDNIVDLRVGTP-----WP---------LPPVEVTAT------LAHTFEVTS-SNSIRIVFDKTTVKPTGGLSQLPSFDTPPLPEFLRQPSNSRGGSFDTTYLDSDFRISRGDRGELRIFVR 286
BLAST of mRNA_P-lacustris_contig1004.147.1 vs. uniprot
Match: A0A835AWW9_9POAL (PAP_fibrillin domain-containing protein n=1 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835AWW9_9POAL) HSP 1 Score: 72.4 bits (176), Expect = 1.100e-9 Identity = 70/217 (32.26%), Postives = 104/217 (47.93%), Query Frame = 1 Query: 238 SLANELLQTVLSGVGEGYIPYSEADKSAIEELVVELETSPGQGTEVEFPRDLDRLDGRWRLIFTNNLVG----LGKFSPVELRDVYQVVDSSAGLVNNVVYATMS-----PPLFSETWGKLGERVAGLAKTIEERITFPVDFNIQHNFEVSSRSKPAQIELVQKELKLMNAEDDAKRSVALPALQPLAKAAAGRFDTTYLDQDIRISRGRFGELRVF 861
SL +LL V SG+ G + +E D S + ELE + G G V+ RDLD+L GRWRL++++ G+ P+ L V+Q +D + +N+V + PPL E A LA E T V N + + + ++K + +L E+ M D+ L+P + +G F+ TYLD D RI+RG GELRVF
Sbjct: 239 SLKVKLLSAV-SGLNRG-LAATEEDLSRADAAARELEAAAG-GEPVDLERDLDKLQGRWRLVYSSAFSRPGPPTGRLLPITLGQVFQRIDVVSRDFDNIVELELGAPWPLPPL---------EVTATLAHKFEIVGTSGVKINFE---KTTVKTKGSLSQLPPLEVPRM--PDN---------LRPPSNTGSGEFEVTYLDGDTRITRGDRGELRVF 429
BLAST of mRNA_P-lacustris_contig1004.147.1 vs. uniprot
Match: A0A835ENR3_9POAL (PAP_fibrillin domain-containing protein n=1 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835ENR3_9POAL) HSP 1 Score: 71.6 bits (174), Expect = 1.760e-9 Identity = 69/220 (31.36%), Postives = 102/220 (46.36%), Query Frame = 1 Query: 229 FGFSLANELLQTVLSGVGEGYIPYSEADKSAIEELVVELETSPGQGTEVEFPRDLDRLDGRWRLIFTNNLVG----LGKFSPVELRDVYQVVDSSAGLVNNVVYATMS-----PPLFSETWGKLGERVAGLAKTIEERITFPVDFNIQHNFEVSSRSKPAQIELVQKELKLMNAEDDAKRSVALPALQPLAKAAAGRFDTTYLDQDIRISRGRFGELRVF 861
F FSL+ +SG+ G + SE D S + ELE + G G V+ RDLD+L GRWRL++++ G+ P+ L V+Q +D + +N+V + PPL E A LA E T V N + V ++ +Q+ L++ D+ L+P + +G F+ TYLD D RI+RG GELRVF
Sbjct: 221 FVFSLS------AVSGLNRG-LAASEEDLSRADAAARELEAAAG-GEPVDLERDLDKLQGRWRLVYSSAFSRPGPPTGRLLPITLGQVFQRIDVVSRDFDNIVELELGAPWPLPPL---------EVTATLAHKFEIVGTSGVKINFEKTT-VKTKGSLSQLP----PLEVPRIPDN---------LRPPSNTGSGEFEVTYLDGDTRITRGDRGELRVF 409
BLAST of mRNA_P-lacustris_contig1004.147.1 vs. uniprot
Match: A0A2R6XJB0_MARPO (PAP_fibrillin domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XJB0_MARPO) HSP 1 Score: 69.7 bits (169), Expect = 2.580e-9 Identity = 69/246 (28.05%), Postives = 102/246 (41.46%), Query Frame = 1 Query: 193 VSPDFENAPAGKFGFSLANELLQTVLSGVGEGYIPYSEADKSAIEELVVELETSPGQGTEVEFPRDLDRLDGRWRLIFTNNLVGLGKF-----------SPVELRDVYQVVDSSAGLVNNVVYATMSPPLFSETWGKLGERVAGLAKTIEERITFPVDFNIQHNFEVSSRSKPAQIELVQKELKLMNAEDDAKRSVALPALQPL------------AKAAAGRFDTTYLDQDIRISRGRFGELRVF 861
VS E APA L +LL V++G+ G + EAD A ++LE + + P DLD+L GRWRL+F++ G G + SP+ L VYQ +D + ++N+V + P W V + H+FE++ SK ++L+ K + L + G F+TTYLD+D RISRG GELR+F
Sbjct: 70 VSVAVEGAPARADRSQLKADLL-AVVAGLDRGLVA-DEADAFAANAAALKLEAAADAP---QLPEDLDKLQGRWRLVFSSGF-GSGSYGGQRPGPSIARSPLSLGSVYQRIDVATRELDNIVDLRVLAP-----WPLPALEVTA---------------TLAHSFELAGGSK----------IRLIFTNTYVKPAGGLSQIPAFXXXXXXXFGSGNVSRGMGEFETTYLDEDFRISRGDRGELRIF 279
BLAST of mRNA_P-lacustris_contig1004.147.1 vs. uniprot
Match: A0A8B8MD97_ABRPR (plastid-lipid-associated protein 6, chloroplastic n=1 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8MD97_ABRPR) HSP 1 Score: 69.3 bits (168), Expect = 2.790e-9 Identity = 75/241 (31.12%), Postives = 112/241 (46.47%), Query Frame = 1 Query: 202 DFENAPAGKFGFSLANELLQTVLSGVGEGYIPYSEADKSAIEELVVELETSPGQGTEVEFPRDLDRLDGRWRLI----FTNNLVG-------LGKFSPVELRDVYQVVDSSAGLVNNVVYATMS-----PPLFSETWGKLGERVAGLAKTIEERITFPVDFNIQHNFEVSSRSKPAQIELVQKELKLMNAEDDAKRS-VALP----ALQPLAKAAAGRFDTTYLDQDIRISRGRFGELRVF 861
D +A +G SL LL V SG+ G + +E D ++ ELE + G V+ D+DRL GRW+LI F++ +G LG F P+ L V+Q +D + +N+V + PPL E A LA H FE+ SK I++V ++ + A + ++ + +P AL+P + +G F+ TYLD D RI+RG GELRVF
Sbjct: 55 DSPSASSGYASDSLKLNLLNAV-SGLNRG-LAANEDDLRKADDAAKELEAAGGL---VDLSVDIDRLQGRWKLIYSSAFSSRTLGGSRPGPPLGTFLPITLGQVFQRIDILSKDFDNIVDLRLGAPWPLPPL---------ELTATLA----------------HKFELIGSSK---IKIVFEKTTVKTAGNLSQLPPLEVPRIPDALRPPSNTGSGEFEITYLDNDTRITRGDRGELRVF 262
BLAST of mRNA_P-lacustris_contig1004.147.1 vs. uniprot
Match: A0A103YFE7_CYNCS (Plastid lipid-associated protein/fibrillin conserved domain-containing protein n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A103YFE7_CYNCS) HSP 1 Score: 68.9 bits (167), Expect = 4.120e-9 Identity = 66/242 (27.27%), Postives = 106/242 (43.80%), Query Frame = 1 Query: 199 PDFENAPAGKFGFSLANEL------LQTVLSGVGEGYIPYSEADKSAIEELVVELETSPGQGTEVEFPRDLDRLDGRWRLI----FTNNLVG-------LGKFSPVELRDVYQVVDSSAGLVNNVVYATMSPPLFSETWGKLGERVAGLAKTIEERITFPVDFNIQHNFEVSSRSKPAQIELVQKELKLMNAEDDAKRSVALPAL----QPLAKAAAGRFDTTYLDQDIRISRGRFGELRVF 861
P E +P+ GF L + L T +SG+ +G + SE D + ELE++ G V+ DLD+L GRW+LI F++ +G +G+ P+ L V+Q +D+ + +N+V + P W V T+ + I+ FE ++ + + S+ +P L +P +G F+ TYLD D+RI+RG GELRVF
Sbjct: 54 PVSEPSPSSYTGFQLPGTVQSLKLKLVTAVSGLNKG-LAASEEDLKKADFAAKELESAGGP---VDLSADLDKLQGRWKLIYSSAFSSRTLGGSRPGPPIGRLLPITLGQVFQRIDTVSKDFDNIVELQLGTP-----WPLQPVEVTA---TLAHKFEIIGSCLIRITFEKTTVKTTGNLSQLP--------------SLEVPQLPEQFRPSTNRGSGEFEVTYLDSDLRITRGDRGELRVF 269
BLAST of mRNA_P-lacustris_contig1004.147.1 vs. uniprot
Match: A0A067L8C6_JATCU (PAP_fibrillin domain-containing protein n=1 Tax=Jatropha curcas TaxID=180498 RepID=A0A067L8C6_JATCU) HSP 1 Score: 68.9 bits (167), Expect = 4.950e-9 Identity = 67/222 (30.18%), Postives = 100/222 (45.05%), Query Frame = 1 Query: 256 LQTVLSGVGEGYIPYSEADKSAIEELVVELETSPGQGTEVEFPRDLDRLDGRWRLI----FTNNLVG-------LGKFSPVELRDVYQVVDSSAGLVNNVVYATMS-----PPLFSETWGKLGER--VAGLAKT--IEERITFPVDFNIQHNFEVSSRSKPAQIELVQKELKLMNAEDDAKRSVALPALQPLAKAAAGRFDTTYLDQDIRISRGRFGELRVF 861
L +V+SG+ G + SE D + ELE + GQ V+ P D+D+L GRW+LI F++ +G G+ P+ L V+Q +D + +N+V + PPL E L + + G AK E+ T N+ S+ P +I + AL+P + +G F+ TYLD D RI+RG GELRVF
Sbjct: 94 LLSVVSGLNRG-LAASEDDLQKADAAAKELEAAGGQ---VDLPNDIDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDVLSKDFDNIVELELGAPWPLPPL--EVTSTLSHKFELIGSAKIKITFEKTTVKTTGNL-------SQLPPFEIPRIP------------------DALRPPSNTGSGEFEVTYLDADTRITRGDRGELRVF 284 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1004.147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1004.147.1 >prot_P-lacustris_contig1004.147.1 ID=prot_P-lacustris_contig1004.147.1|Name=mRNA_P-lacustris_contig1004.147.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=292bp MRLQACLAAVAATANICGAFVPALLRCRDDVRGESSVLVPSSCRANASPLback to top mRNA from alignment at P-lacustris_contig1004:30090..38992+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1004.147.1 ID=mRNA_P-lacustris_contig1004.147.1|Name=mRNA_P-lacustris_contig1004.147.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=8903bp|location=Sequence derived from alignment at P-lacustris_contig1004:30090..38992+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1004:30090..38992+ >mRNA_P-lacustris_contig1004.147.1 ID=mRNA_P-lacustris_contig1004.147.1|Name=mRNA_P-lacustris_contig1004.147.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1752bp|location=Sequence derived from alignment at P-lacustris_contig1004:30090..38992+ (Pleurocladia lacustris SAG_25_93)back to top |