Homology
BLAST of mRNA_P-lacustris_contig1002.131.1 vs. uniprot
Match:
A0A6H5JEB8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEB8_9PHAE)
HSP 1 Score: 289 bits (740), Expect = 1.280e-87
Identity = 170/268 (63.43%), Postives = 198/268 (73.88%), Query Frame = 2
Query: 56 MASNSWRLHVGGVRLLISVLLLFSKPQATH--TAAEPTAHHNQLKK------------DTPAERRSGAAEPAVAVGATALPSGESAKGSTAAEVKMFDFSFSPVGPHGLQDTYAKAAAGAGDGDVEQEPHSAAAVPPSALSLRECSLGDVGVAEFARSPWVCGRTGVRALSLRQNQVTAVGMRALMESLRSSTDS-DRLACLELDFNPIGDAGAQPLPAYLKERAERGGGGLEELSLRFCDIGPAGCRYLSSALLKSATAAKIADNSD 814
MAS + L+ GG++LL SVLL S P+A H T+A T+HH++L DT + R AEPA+++ A+P E G+T EV+M DFSFSP+GP GLQDT AA +G + P + + PPSALSLRECSLGD+GVAE ARSPWV G+ GVRALSLRQNQVTA G+RAL++SLRS+ DS DRLACLELDFNPIGDAGAQPLPAYLKERA RGGGGLEELSLRFCDIGPAGCRYLSSALLKSA AAKI+ N D
Sbjct: 1 MASKASVLNGGGLKLLTSVLLAISTPRAIHCGTSAGSTSHHDRLATAAAPPGDMTPPADTSSRSR---AEPALSI---AIPPREPVTGNTPLEVQMLDFSFSPLGPRGLQDTDIDAAGVVEEGQHHRYPDTNS--PPSALSLRECSLGDLGVAEVARSPWVRGKAGVRALSLRQNQVTAAGVRALLDSLRSAADSGDRLACLELDFNPIGDAGAQPLPAYLKERAARGGGGLEELSLRFCDIGPAGCRYLSSALLKSAAAAKISANDD 260
BLAST of mRNA_P-lacustris_contig1002.131.1 vs. uniprot
Match:
D8LLY3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLY3_ECTSI)
HSP 1 Score: 257 bits (657), Expect = 9.440e-72
Identity = 146/200 (73.00%), Postives = 162/200 (81.00%), Query Frame = 2
Query: 218 AEPAVAVGATALPSGESAKGSTAAEVKMFDFSFSPVGPHGLQDTYAKAAAGAGDGDVEQEPHSAAAVPPSALSLRECSLGDVGVAEFARSPWVCGRTGVRALSLRQNQVTAVGMRALMESLRSSTDS-DRLACLELDFNPIGDAGAQPLPAYLKERAERGGGGLEELSLRFCDIGPAGCRYLSSALLKSATAAKIADNSD 814
AEP++AV A+P E A G+ EV+M DFSFSP+GP GLQDT AA +G + P++ PPSALSLRECSLGD+GVAE ARSPWV G+ GVRALSLRQNQVTA G+RAL++SLRS+TDS DRLACLELDFNPIGDAGAQPLPAYLKERA RGGGGLEELSLRFCDIGPAG YLSSALLKSA AAKIA N D
Sbjct: 13 AEPSLAV---AIPPHEPATGNAPLEVQMLDFSFSPLGPRGLQDTDIDAAGVVEEGQQHRHPNTNP--PPSALSLRECSLGDLGVAEVARSPWVRGKAGVRALSLRQNQVTAAGVRALLDSLRSATDSGDRLACLELDFNPIGDAGAQPLPAYLKERAARGGGGLEELSLRFCDIGPAG--YLSSALLKSAAAAKIAANDD 205
BLAST of mRNA_P-lacustris_contig1002.131.1 vs. uniprot
Match:
A0A835Z931_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z931_9STRA)
HSP 1 Score: 115 bits (289), Expect = 9.360e-24
Identity = 76/166 (45.78%), Postives = 91/166 (54.82%), Query Frame = 2
Query: 296 KMFDFSFSPVGPHGLQDTYAKAAAGAGDGDVEQEPHSAAAVPPSALSLRECSLGDVGVAEFARSPWVCGRTGVRALSLRQNQVTAVGMRALMESLRSSTDSDRLACLELDFNPIGDAGAQPLPAYLKERAERGGGGLEELSLRFCDIGPAGCRYLSSALLKSATAA 793
+ D SFS VGP G + + S A+ PS L L+ECSLGD G + S V GV LSLR N + VG R+L++ LR T DRL L LDFN IGDAG QPLPA LK+ + G LE LSLRFC I AGCR ++SAL K+ A
Sbjct: 53 QFIDLSFSHVGPVGASEVLSGL--------------SEASAAPSGLLLQECSLGDRGALDVVSSTLVSSPEGVGVLSLRHNHIGRVGSRSLLQHLR--TAPDRLQTLVLDFNLIGDAGLQPLPALLKDSSN---GRLESLSLRFCGISAAGCRSIASALSKAQVNA 199
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1002.131.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 1.28e-87 / Id = 63.43 Expect = 9.44e-72 / Id = 73.00 Expect = 9.36e-24 / Id = 45.78 Sequence A0A6H5JEB8_9PHAE D8LLY3_ECTSI A0A835Z931_9STRA back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 260.4 Seed ortholog evalue 1e-66 Seed eggNOG ortholog 2880.D8LLY3 Hectar predicted targeting category signal peptide EggNOG free text desc. interleukin-8 biosynthetic process EggNOG OGs KOG4308@1,KOG4308@2759 Ec32 ortholog description Hypothetical leucine rich repeat protein Ec32 ortholog Ec-14_002100.1 COG Functional cat. S Best tax level Eukaryota Best eggNOG OG NA|NA|NA Exons 3 Model size 1535 Cds size 888 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815269.437565-UTR-P-lacustris_contig1002:36931..37523 1622815269.437565-UTR-P-lacustris_contig1002:36931..37523 Pleurocladia lacustris SAG_25_93 UTR P-lacustris_contig1002 36932..37523 - 1693493440.5155897-UTR-P-lacustris_contig1002:36931..37523 1693493440.5155897-UTR-P-lacustris_contig1002:36931..37523 Pleurocladia lacustris SAG_25_93 UTR P-lacustris_contig1002 36932..37523 - 1622815269.4806106-UTR-P-lacustris_contig1002:39511..39566 1622815269.4806106-UTR-P-lacustris_contig1002:39511..39566 Pleurocladia lacustris SAG_25_93 UTR P-lacustris_contig1002 39512..39566 - 1693493440.5683463-UTR-P-lacustris_contig1002:39511..39566 1693493440.5683463-UTR-P-lacustris_contig1002:39511..39566 Pleurocladia lacustris SAG_25_93 UTR P-lacustris_contig1002 39512..39566 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815269.447666-CDS-P-lacustris_contig1002:37523..37713 1622815269.447666-CDS-P-lacustris_contig1002:37523..37713 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1002 37524..37713 - 1693493440.5272663-CDS-P-lacustris_contig1002:37523..37713 1693493440.5272663-CDS-P-lacustris_contig1002:37523..37713 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1002 37524..37713 - 1622815269.4591568-CDS-P-lacustris_contig1002:38054..38266 1622815269.4591568-CDS-P-lacustris_contig1002:38054..38266 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1002 38055..38266 - 1693493440.5434334-CDS-P-lacustris_contig1002:38054..38266 1693493440.5434334-CDS-P-lacustris_contig1002:38054..38266 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1002 38055..38266 - 1622815269.468998-CDS-P-lacustris_contig1002:39025..39511 1622815269.468998-CDS-P-lacustris_contig1002:39025..39511 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1002 39026..39511 - 1693493440.5556183-CDS-P-lacustris_contig1002:39025..39511 1693493440.5556183-CDS-P-lacustris_contig1002:39025..39511 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1002 39026..39511 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1002.131.1
>prot_P-lacustris_contig1002.131.1 ID=prot_P-lacustris_contig1002.131.1|Name=mRNA_P-lacustris_contig1002.131.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=296bp
MASNSWRLHVGGVRLLISVLLLFSKPQATHTAAEPTAHHNQLKKDTPAER back to top mRNA from alignment at P-lacustris_contig1002:36932..39566-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1002.131.1 ID=mRNA_P-lacustris_contig1002.131.1|Name=mRNA_P-lacustris_contig1002.131.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2635bp|location=Sequence derived from alignment at P-lacustris_contig1002:36932..39566- (Pleurocladia lacustris SAG_25_93)TTTCGCCGCTCGCCGCCCCGCCGACTTTGACAAACTGAGCACGACATGCA
TGTAG ATGGCTTCGAACTCATGGAGACTACATGTTGGTGGAGTAAGGCTG
CTAATTTCCGTGCTTCTGCTGTTCTCGAAGCCCCAAGCAACCCACACAGC
TGCAGAACCGACCGCACATCATAATCAACTCAAGAAGGATACTCCAGCGG
AAAGGAGAAGCGGCGCTGCCGAGCCGGCCGTGGCTGTCGGGGCGACTGCT
TTGCCGTCTGGCGAGTCCGCCAAGGGAAGCACAGCAGCGGAGGTCAAAAT
GTTCGACTTCTCCTTCAGCCCCGTCGGGCCTCACGGCCTGCAAGACACCT
ACGCCAAAGCAGCAGCAGGAGCAGGAGACGGAGATGTTGAACAAGAGCCG
CACTCCGCAGCGGCGGTTCCACCTTCCGCCCTCAGCCTCCGGGAGTGTTC
CCTCGGGGACGTGGGGGTCGCAGAGTTTGCGAGATCCCCGTGGGTGTGTG
GCAGAACGGGAGTGAGGGCATTGTCGCTGCGGCAGAACCAG GTACGGAGC
TCACCACCAGCAGGTGCTTAATTAACACGTGGGTGCAGTGCGTGATCTCA
AAACAGCCAACATGTTTGCGCGTTAACGATCCCAAGAAGTGTTCTAGCAG
CACATAGGAGCGGCAGCAGCACAACAGCCCGCCGGGCGTGCGTGCGTTTC
CATTGTCTGTAACTATATTGTAGGCTGGGTTCTAATCACAGCGGAAAGTG
TGTAGCTTAATTGCAATCATGTACAACTGAGCGTTGTGCAACACACAACG
GTTTCAAGCAGACGTAACCGTCGTTGGGTTTTGCTTTTCTTCCCTCTAGT
TCTTTGTCCTCGGTGGTGCGTACGTCGTGTGTAGCATCAATGCACGAAGG
AAACTCTTCGATAACTCCTCATTACTGTAGTGTACAAGCGTTCTCTACTC
GTGGCAGTTACAGTACCCCTCTTGCTGGCGTGACCACCGTTGTGGCCTCG
GCAGAGCTGGTGCGGCTGTCCCGGTATCATGCATACAGCAGCAGCGATCG
ATAAGCGGCGTCGTTAGTCTGAAACGCCGTTCTTGCCATGTGGAAGAACG
GCAGCCTCGATAGGAACCTGTCGTTGCTGTCTGGCGACAATCTACGTACC
GAGGTCGTGTATATCAGCTGGTACATTTGCGGGATTTGTCCTCCTACGCG
AAAAACTACAAGCCATGGAGACCACACGCGCCTTTCACAACAAACGGCCC
GCCGCCCCCCTATCCGCCACCCCTACCACGGTCATCTCCCGCGAGAGCAG
GTGACAGCGGTCGGCATGCGAGCGCTGATGGAGTCCCTCCGCTCTTCGAC
CGACTCCGACAGGTTAGCCTGCCTCGAGCTCGACTTCAATCCTATTGGGG
ATGCGGGCGCGCAGCCCCTGCCGGCTTACCTGAAAGAGCGCGCAGAGAGG
GGGGGCGGCGGGCTGGAGGAGCTGTCGCTGCGGTTTTGCGACATCGGGCC
GGCGGGATGCAG GTTGGCTTTGGCCCGGTCTAGCTACAGTCGAGAGGGAC
AGCGAAGAGTTGGGTTATTTGTCGGGGTGGCACTCGACAGGCGCCAGGAC
AACATGCGCGTGATCGTGAGCATGCGCATGAAGGGAAGGGACGAAGCGGG
TGTTTTGTTCCCCGAAAGTCCGGCCGGCCGGAACCTGCCGATCCTCCGAT
CGTGCTGCGTTTGTTGTCGAGATAGGTCCTACTCGACTCGACACGAAAAA
TAACGACTACTGTCATCACGATCAACGCAAAGGAACCACAGCAGCATCGC
CAGCCAGAACTCACGCTCTTCCTCTCTCCCTCACTCCGTGTACCCTGTAT
CAGGTACCTCTCATCGGCGCTCTTGAAGAGCGCGACCGCCGCAAAGATTG
CCGATAACAGCGACACTGGCACTGACAACGACAACGATAACCAACCGATT
GGTGGGGTTTCTACCGAGCGGGGGGAAGACGAGCAGGTGGACGGGGAGAT
GGAGACGGGGGTGATGGAGGGTACTCACTGCCACCCCCCGTAG CTTCCGG
AATTCGACGGCTTCTTTTGACGGGAAATAATCGCCTCGGTGACGCGGGGG
TGAGAGCACTCGCGTCGGCGCTAAAGAAGGACTGTTCTCTCGAAGTTCTG
GACCTTACCAGGTAGTACGGTGTGGAATGCCGAAGTTGTGGTACGTATTT
GTAGCCGGCAGGATTGTTGTTGTTACTGTTGTTGTCGTTGTTGTTTTTGT
TGTCTCGACTCTAATAACCGTTCTGACGTATCCAGACCTCGTCTTCGGTC
CTCTCCAACGGCAGAGAATCGAATCTCGTGGCAATAAGCTAACCTTGGGA
TTGATTGGATACAATGAGTCTGCAGGAGAATGTCCCACCAATGCTGTTAT
CGTGACAAAATAAAGGTTCCTGAGCAGAGGCTGGTTGCGATGCAGGTGCC
GGTTTTTGGTTGTGGTATCTGTTTGAGGGCCACCTTTCGTTCGCTCGTAT
GCACATGCTCCAGTCTCTGTGCCCTTGCGTCCAATTATATAATCCTCCAT
CCGCCGCTTTTTTTAATGCTCGAATTGAAGACTAGAGCCCAGAATAGAAG
GTATGACGACACTCACGTTGATTGAAACTGCCCAG back to top Coding sequence (CDS) from alignment at P-lacustris_contig1002:36932..39566-
>mRNA_P-lacustris_contig1002.131.1 ID=mRNA_P-lacustris_contig1002.131.1|Name=mRNA_P-lacustris_contig1002.131.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1776bp|location=Sequence derived from alignment at P-lacustris_contig1002:36932..39566- (Pleurocladia lacustris SAG_25_93) back to top