mRNA_P-lacustris_contig1001.128.1 (mRNA) Pleurocladia lacustris SAG_25_93
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-lacustris_contig1001.128.1 vs. uniprot
Match: A0A6H5KMU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMU8_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 2.150e-13 Identity = 41/88 (46.59%), Postives = 54/88 (61.36%), Query Frame = 1 Query: 64 GWYTSTAQLQLASLELCVVCRSVSTLHLVVDSKDMFVRLLDDASPSETRSNK-KVNATRVPALCPLKVTWNLRASALSQKRHIFDSVE 324 GWYTS QLQLASL+LC+ CR V T HL V+ +D+ L ++ TRS + +RVPAL P KVTWNL ++ F+SV+ Sbjct: 31 GWYTSKLQLQLASLQLCLACRRVPTSHLTVE-RDVLALLWPHSAAEATRSRLVSLGQSRVPALRPRKVTWNLATLSMRHCGDAFESVD 117
BLAST of mRNA_P-lacustris_contig1001.128.1 vs. uniprot
Match: D7FXS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS2_ECTSI) HSP 1 Score: 72.0 bits (175), Expect = 3.900e-13 Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 1 Query: 67 WYTSTAQLQLASLELCVVCRSVSTLHLVVDSKDMFVRLLDDASPSETRSN-KKVNATRVPALCPLKVTWNLRASALSQKRHIFDSVECF 330 WYTST +LQLASL+ CV CR V +LHL V++ + RL +D + +E R+ K+ + T VP P +VTW A LS +F VE F Sbjct: 24 WYTSTKELQLASLQFCVKCRKVPSLHLAVNNAHVPARLWNDHAATEARTGAKRPSTTPVPVFRPREVTWGRPAWLLSDICLVFAKVERF 112
BLAST of mRNA_P-lacustris_contig1001.128.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 3.740e-11 Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 1 Query: 61 KGWYTSTAQLQLASLELCVVCRSVSTLHLVVDSKDMFVRLLDDASPSETRSNKKVNATRVPALCPLKVTWNLRASA 288 K WYTST +LQLASLE C+ CR+ TLHL+VD + R+L A+ + K+++ RVP L VTWN+ +A Sbjct: 51 KSWYTSTKELQLASLEFCMACRAYQTLHLIVDVR--IPRMLLAAADGPPQHPKRLSRRRVPRLRARHVTWNMPTAA 124
BLAST of mRNA_P-lacustris_contig1001.128.1 vs. uniprot
Match: A0A6H5JG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG83_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 4.870e-11 Identity = 42/102 (41.18%), Postives = 53/102 (51.96%), Query Frame = 1 Query: 61 KGWYTSTAQLQLASLELCVVCRSVSTLHLVVDS---KDMFVRLLDDASPSETRSNKKVNA-----TRVPALCPLKVTWNLRASALSQ-KRHIFDSVECFTLS 339 K WY ST QLQLAS+E CV CRSVSTLHL V+ + ++ D S RVP P +VTWNL S LS+ + F ++EC + S Sbjct: 11 KQWYISTVQLQLASVEFCVACRSVSTLHLTVEEGTPRHLWADTWSDQSDXXXXXXXXXXXGRSVLVRVPPFRPREVTWNLPPSMLSEASKDAFKNLECMSFS 112
BLAST of mRNA_P-lacustris_contig1001.128.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE) HSP 1 Score: 66.2 bits (160), Expect = 2.370e-10 Identity = 38/88 (43.18%), Postives = 53/88 (60.23%), Query Frame = 1 Query: 61 KGWYTSTAQLQLASLELCVVCRSVSTLHLVVDSKDMFVRLLDDASPSETRSNKKVNATRVPALCPLKVTWNLRASALSQKRHIFDSVE 324 K WYTST +LQLASLELC+ CR TLHL VD+ R L A+ + + K++ TRVP L + TWN+ +A + IF +++ Sbjct: 151 KSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTP--RRLLAAADAPSPHPKRLCGTRVPRLRARRATWNV-PTASGMRTSIFATMD 235
BLAST of mRNA_P-lacustris_contig1001.128.1 vs. uniprot
Match: D7FT95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT95_ECTSI) HSP 1 Score: 64.3 bits (155), Expect = 6.960e-10 Identity = 38/75 (50.67%), Postives = 42/75 (56.00%), Query Frame = 1 Query: 67 WYTSTAQLQLASLELCVVCRSVSTLHLVVDSKDMFVRLLDDASPSETRSNKKVNATRVPALCPLKVTWNLRASAL 291 WYTST QLQLASLELC CRS+ L L V A+ ETRS K+ N TRVP + VTW L AL Sbjct: 28 WYTSTMQLQLASLELCASCRSMHLLKLNVQHGTPTRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGLAL 102
BLAST of mRNA_P-lacustris_contig1001.128.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE) HSP 1 Score: 63.2 bits (152), Expect = 2.720e-9 Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 1 Query: 61 KGWYTSTAQLQLASLELCVVCRSVSTLHLVVDSKDMFVRLLDDASPSETRSNKKVNATRVPALCPLKVTWNLRASA 288 K WYTST +LQLASL+ C+ CR+ T+HL VD + R L ++ + K++ TRVP L +VTWN+ +A Sbjct: 66 KSWYTSTKELQLASLDFCIACRNCQTVHLNVD--EQIPRRLLASADAPPPHPKRLCWTRVPRLRSRRVTWNMPTAA 139
BLAST of mRNA_P-lacustris_contig1001.128.1 vs. uniprot
Match: D7FH81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI) HSP 1 Score: 61.6 bits (148), Expect = 3.490e-9 Identity = 34/74 (45.95%), Postives = 45/74 (60.81%), Query Frame = 1 Query: 67 WYTSTAQLQLASLELCVVCRSVSTLHLVVDSKDMFVRLLDDASPSETRSNKKVNATRVPALCPLKVTWNLRASA 288 WYTST +LQ ASLE C+ CR+ +HL VD + R L A+ + K++ TRVP L VTWN+RA+A Sbjct: 31 WYTSTKELQRASLEFCIACRNYPIMHLKVDPQ--IPRNLLAAADAPPPHPKRLCWTRVPRLRARSVTWNMRAAA 102
BLAST of mRNA_P-lacustris_contig1001.128.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI) HSP 1 Score: 62.4 bits (150), Expect = 4.980e-9 Identity = 42/92 (45.65%), Postives = 54/92 (58.70%), Query Frame = 1 Query: 61 KGWYTSTAQLQLASLELCVVCRSVSTLHLVVDSKDMFVRLLD--DASPSETRSNKKVNATRVPALCPLKVTWNLRASA-LSQKRHIFDSVEC 327 + WYTST +LQLASLE CV CR+ TLHL VD++ + RLL DA P + + TRVP L +VTW +R +A LS V+C Sbjct: 128 ESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQ-IPRRLLARADAPPPHP---ELLCRTRVPRLRARRVTWGMRKAAELSIPIFAMTDVDC 215
BLAST of mRNA_P-lacustris_contig1001.128.1 vs. uniprot
Match: A0A6H5JYF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF0_9PHAE) HSP 1 Score: 56.2 bits (134), Expect = 7.320e-7 Identity = 36/84 (42.86%), Postives = 45/84 (53.57%), Query Frame = 1 Query: 61 KGWYTSTAQLQLASLELCVVCRSVSTLHLVVDSKDMFVRLLDDASPSETRSNKKVNATRVPALCPLKVTWNLRASALSQKRHIF 312 K WYTST +LQ ASLE C+ CR TL L VD + L +PS +K+ TRVP L +V WN+ +A K IF Sbjct: 5 KRWYTSTKELQQASLEFCIACRKYQTLRLRVDVQTPRTLLAAVDAPSP--HSKRPCRTRVPRLRARRVIWNM-PTATELKSPIF 85 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1001.128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1001.128.1 >prot_P-lacustris_contig1001.128.1 ID=prot_P-lacustris_contig1001.128.1|Name=mRNA_P-lacustris_contig1001.128.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=113bp SRCTSLHGRFCRGHQPGVRPKGWYTSTAQLQLASLELCVVCRSVSTLHLVback to top mRNA from alignment at P-lacustris_contig1001:74343..74681+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1001.128.1 ID=mRNA_P-lacustris_contig1001.128.1|Name=mRNA_P-lacustris_contig1001.128.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=339bp|location=Sequence derived from alignment at P-lacustris_contig1001:74343..74681+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1001:74343..74681+ >mRNA_P-lacustris_contig1001.128.1 ID=mRNA_P-lacustris_contig1001.128.1|Name=mRNA_P-lacustris_contig1001.128.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=678bp|location=Sequence derived from alignment at P-lacustris_contig1001:74343..74681+ (Pleurocladia lacustris SAG_25_93)back to top |