mRNA_P-lacustris_contig1001.126.1 (mRNA) Pleurocladia lacustris SAG_25_93
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1001.126.1 vs. uniprot
Match: D7FXS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS2_ECTSI) HSP 1 Score: 92.0 bits (227), Expect = 4.310e-17 Identity = 56/132 (42.42%), Postives = 73/132 (55.30%), Query Frame = 1 Query: 1468 RCMDAFVVAINQAFDRKGWYTSTAQLQLASLELCVVCRSVSTLHLVVNSKVLLMTRSN-----------KKVNATRVPALCPLKVTWNLRASALSRKRHIFDNVECFTLSDRSNGAVDKVAWPPRLQRLFLG 1830
RC++AF VA+N + D WYTST +LQLASL+ CV CR V +LHL VN+ + N K+ + T VP P +VTW A LS +F VE F + R + VD V WP RL++LF G
Sbjct: 6 RCLEAFAVALNTSCDGNVWYTSTKELQLASLQFCVKCRKVPSLHLAVNNAHVPARLWNDHAATEARTGAKRPSTTPVPVFRPREVTWGRPAWLLSDICLVFAKVERFLV--RQDTVVDDVVWPCRLKKLFFG 135
BLAST of mRNA_P-lacustris_contig1001.126.1 vs. uniprot
Match: A0A6H5KMU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMU8_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 4.320e-17 Identity = 53/126 (42.06%), Postives = 68/126 (53.97%), Query Frame = 1 Query: 1474 MDAFVVAINQAFDRKGWYTSTAQLQLASLELCVVCRSVSTLHLVVNSKVLLMTRSNKKVNATR----------VPALCPLKVTWNLRASALSRKRHIFDNVECFTLSDRSNGAVDKVAWPPRLQRL 1821
DA +A+NQ GWYTS QLQLASL+LC+ CR V T HL V VL + + ATR VPAL P KVTWNL ++ F++V+ D + VD+V WPP L++L
Sbjct: 16 QDALDIALNQVSGVNGWYTSKLQLQLASLQLCLACRRVPTSHLTVERDVLALLWPHSAAEATRSRLVSLGQSRVPALRPRKVTWNLATLSMRHCGDAFESVDVLVFGDSFDYRVDRVTWPPGLKKL 141
BLAST of mRNA_P-lacustris_contig1001.126.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 6.630e-15 Identity = 52/139 (37.41%), Postives = 82/139 (58.99%), Query Frame = 1 Query: 1435 LLSCDPGPDARRCMDAFVVAINQAFDRKGWYTSTAQLQLASLELCVVCRSVSTLHLVVNSKV--LLMTRSN------KKVNATRVPALCPLKVTWNLRASALSRKRHIFDNVECFTLSDRS--NGAVDKVAWPPRLQRL 1821
++ C PGP + C++A VA+ + D K WYTST +LQLASLE C+ CR+ TLHL+V+ ++ +L+ ++ K+++ RVP L VTWN+ +A R IF ++ L S G+++ V WP RL+ +
Sbjct: 24 IVYCSPGPTSNTCLNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGPPQHPKRLSRRRVPRLRARHVTWNMPTAAELRSP-IFALMDLDHLDFGSAFEGSLEAVTWPRRLESI 161
BLAST of mRNA_P-lacustris_contig1001.126.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 8.580e-15 Identity = 55/168 (32.74%), Postives = 88/168 (52.38%), Query Frame = 1 Query: 1351 SISPRVSDKYSGHNA--SLTSPGNHRVPDGLLSCDPGPDARRCMDAFVVAINQAFDRKGWYTSTAQLQLASLELCVVCRSVSTLHLVVNSKV---LLMTRSN-----KKVNATRVPALCPLKVTWNLRASALSRKR-HIFDNVECFTLSDRSNGAVDKVAWPPRLQRL 1821
S P + + SG +A + + G P +L GP + C++A +VA+N+ D K WYTST +LQLASL+ C+ CR+ T+HL V+ ++ LL + K++ TRVP L +VTWN+ +A R ++E D +++ V WP L+ +
Sbjct: 9 SARPGIRNSVSGSDARKNRRNGGVLMRPSTILRVQKGPTRKFCLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPPHPKRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPEHLRTM 176
BLAST of mRNA_P-lacustris_contig1001.126.1 vs. uniprot
Match: D7FH81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI) HSP 1 Score: 82.8 bits (203), Expect = 7.150e-14 Identity = 46/126 (36.51%), Postives = 70/126 (55.56%), Query Frame = 1 Query: 1471 CMDAFVVAINQAFDRKGWYTSTAQLQLASLELCVVCRSVSTLHLVVNSKV---LLMTRSN-----KKVNATRVPALCPLKVTWNLRASA-LSRKRHIFDNVECFTLSDRSNGAVDKVAWPPRLQRL 1821
C+ + +VA+N+ D WYTST +LQ ASLE C+ CR+ +HL V+ ++ LL K++ TRVP L VTWN+RA+A L +V+C +G+++ V WP RL+ +
Sbjct: 14 CLSSLIVALNETCDGTSWYTSTKELQRASLEFCIACRNYPIMHLKVDPQIPRNLLAAADAPPPHPKRLCWTRVPRLRARSVTWNMRAAAELGNPIFAITDVDCLEFGGTFDGSLEAVTWPRRLKMI 139
BLAST of mRNA_P-lacustris_contig1001.126.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE) HSP 1 Score: 87.8 bits (216), Expect = 8.140e-14 Identity = 50/136 (36.76%), Postives = 73/136 (53.68%), Query Frame = 1 Query: 1441 SCDPGPDARRCMDAFVVAINQAFDRKGWYTSTAQLQLASLELCVVCRSVSTLHLVVNSKV--LLMTRSN------KKVNATRVPALCPLKVTWNL-RASALSRKRHIFDNVECFTLSDRSNGAVDKVAWPPRLQRL 1821
SC GP C+ VA+N+ D K WYTST +LQLASLELC+ CR TLHL V++ L+ ++ K++ TRVP L + TWN+ AS + +V+ +G++D + WP RL+ +
Sbjct: 126 SCTLGPTRSSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTI 261
BLAST of mRNA_P-lacustris_contig1001.126.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI) HSP 1 Score: 84.3 bits (207), Expect = 3.850e-13 Identity = 51/134 (38.06%), Postives = 77/134 (57.46%), Query Frame = 1 Query: 1399 LTSPGNHRVPDGLLSCDPGPDARRCMDAFVVAINQAFDRKGWYTSTAQLQLASLELCVVCRSVSTLHLVVNSKV--LLMTRSN------KKVNATRVPALCPLKVTWNLRASA-LSRKRHIFDNVECFTLSDRS 1773
++P VP LL PGP C++A V+A+N+ + + WYTST +LQLASLE CV CR+ TLHL V++++ L+ R++ + + TRVP L +VTW +R +A LS +V+C + S
Sbjct: 91 FSAPAFPAVP--LLPTMPGPSRSSCLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLARADAPPPHPELLCRTRVPRLRARRVTWGMRKAAELSIPIFAMTDVDCLKFGETS 222
BLAST of mRNA_P-lacustris_contig1001.126.1 vs. uniprot
Match: A0A6H5JG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG83_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 2.530e-11 Identity = 55/137 (40.15%), Postives = 71/137 (51.82%), Query Frame = 1 Query: 1486 VVAINQAFDRKGWYTSTAQLQLASLELCVVCRSVSTLHLVVNS----KVLLMTRSNK--------------KVNATRVPALCPLKVTWNLRASALSR-KRHIFDNVECFTLSD---RSNGAVDKVAWPPRLQRLFLG 1830
+VA+N+ + K WY ST QLQLAS+E CV CRSVSTLHL V + T S++ + RVP P +VTWNL S LS + F N+EC + SD RS + D VA P L+ + G
Sbjct: 1 MVALNETYGGKQWYISTVQLQLASVEFCVACRSVSTLHLTVEEGTPRHLWADTWSDQSDXXXXXXXXXXXGRSVLVRVPPFRPREVTWNLPPSMLSEASKDAFKNLECMSFSDAVERSGDSFDGVALPRGLKSVVFG 137
BLAST of mRNA_P-lacustris_contig1001.126.1 vs. uniprot
Match: A0A6H5L1V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 4.810e-11 Identity = 51/131 (38.93%), Postives = 71/131 (54.20%), Query Frame = 1 Query: 1465 RRCMDAFVVAINQAFD--RKGWYTSTAQLQLASLELCVVCRSVSTLHLVVNSKVLLMTRSNKKVN-----ATRVPALCPLKVTWNLRASAL--SRKRHIFDNVECFTLS-DRSNGAVDKVAWPPRLQRLFL 1827
RRC+DAFVVA++Q ++ K WYTST QLQLASLE C CRS LH+ V+++ S + N +TRVPA+ + +TW + S ++ +E L +D V WP LQRL +
Sbjct: 7 RRCLDAFVVALSQCYEGGEKRWYTSTLQLQLASLEFCGACRSTPMLHVYVDAETPPTLWSLGQANPTAGTSTRVPAVQAVGLTWARPTESPLGSASSELWTRLESLQLQVSLCTANLDSVVWPQGLQRLVM 137
BLAST of mRNA_P-lacustris_contig1001.126.1 vs. uniprot
Match: D7FT95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT95_ECTSI) HSP 1 Score: 75.9 bits (185), Expect = 6.000e-11 Identity = 53/133 (39.85%), Postives = 69/133 (51.88%), Query Frame = 1 Query: 1468 RCMDAFVVAINQAFDRKGWYTSTAQLQLASLELCVVCRSVSTLHLVVN----------SKVLLMTRSNKKVNATRVPALCPLKVTWNLRASALSRKR-HIFDNVECFTLSDRSNGAVDK-VAWPPRLQRLFLG 1830
RC+DA ++A+NQA + WYTST QLQLASLELC CRS+ L L V + TRS K+ N TRVP + VTW L AL + V F+L + + + + WP +L L LG
Sbjct: 11 RCLDALIIALNQASGGE-WYTSTMQLQLASLELCASCRSMHLLKLNVQHGTPTRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGLALRNMTGDAWSEVTTFSLGPGFDDDLPRGIQWPEKLTLLGLG 142 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1001.126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1001.126.1 >prot_P-lacustris_contig1001.126.1 ID=prot_P-lacustris_contig1001.126.1|Name=mRNA_P-lacustris_contig1001.126.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=405bp MDAFVVAINQAFDRKGWYTSTAQLQLASLELCVVCRSVSTLHLVVNSKVLback to top mRNA from alignment at P-lacustris_contig1001:41167..46162+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1001.126.1 ID=mRNA_P-lacustris_contig1001.126.1|Name=mRNA_P-lacustris_contig1001.126.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4996bp|location=Sequence derived from alignment at P-lacustris_contig1001:41167..46162+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1001:41167..46162+ >mRNA_P-lacustris_contig1001.126.1 ID=mRNA_P-lacustris_contig1001.126.1|Name=mRNA_P-lacustris_contig1001.126.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2430bp|location=Sequence derived from alignment at P-lacustris_contig1001:41167..46162+ (Pleurocladia lacustris SAG_25_93)back to top |