Homology
BLAST of mRNA_P-lacustris_contig1000.120.1 vs. uniprot
Match:
D7G824_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G824_ECTSI)
HSP 1 Score: 81.6 bits (200), Expect = 1.630e-13
Identity = 41/62 (66.13%), Postives = 48/62 (77.42%), Query Frame = 1
Query: 184 GPALEKLLAHDFSSPRGRSVAEKNAHIPVRKRKFQFAAAVFLLPRPTMLKGLAGQSVLSVND 369
G LEKLLAHDFSSPRGRS AEKNA++ +RKRKF+ AAAVFLLPRP M+K ++ V D
Sbjct: 1864 GQRLEKLLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAAAVFLLPRPAMVKEALQVILMHVKD 1925
BLAST of mRNA_P-lacustris_contig1000.120.1 vs. uniprot
Match:
A0A6H5K928_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K928_9PHAE)
HSP 1 Score: 80.1 bits (196), Expect = 5.440e-13
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 1
Query: 184 GPALEKLLAHDFSSPRGRSVAEKNAHIPVRKRKFQFAAAVFLLPRPTMLKGLAGQSVLSVND 369
G LEKLLAHDFSSPRGRS AEKNA++ +RKRKF+ A AVFLLPRP M+K ++ V D
Sbjct: 1955 GQRLEKLLAHDFSSPRGRSAAEKNAYVLLRKRKFKSAVAVFLLPRPAMVKEALQVILMHVKD 2016
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1000.120.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.63e-13 / Id = 66.13 Expect = 5.44e-13 / Id = 64.52 Sequence D7G824_ECTSI A0A6H5K928_9PHAE
Match Name E-value Identity Description
D7G824_ECTSI 1.630e-13 66.13 PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more] A0A6H5K928_9PHAE 5.440e-13 64.52 PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 82.4 Seed ortholog evalue 2.1e-13 Seed eggNOG ortholog 2880.D7G824 Hectar predicted targeting category mitochondrion EggNOG free text desc. vacuolar proton-transporting V-type ATPase complex assembly EggNOG OGs KOG1064@1,KOG1064@2759 COG Functional cat. U Best tax level Eukaryota Best eggNOG OG NA|NA|NA Exons 3 Model size 884 Cds size 477 Stop 1 Start 0
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815268.6286154-CDS-P-lacustris_contig1000:44305..44388 1622815268.6286154-CDS-P-lacustris_contig1000:44305..44388 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1000 44306..44388 + 1693493440.0411181-CDS-P-lacustris_contig1000:44305..44388 1693493440.0411181-CDS-P-lacustris_contig1000:44305..44388 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1000 44306..44388 + 1622815268.6405303-CDS-P-lacustris_contig1000:45419..45503 1622815268.6405303-CDS-P-lacustris_contig1000:45419..45503 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1000 45420..45503 + 1693493440.055292-CDS-P-lacustris_contig1000:45419..45503 1693493440.055292-CDS-P-lacustris_contig1000:45419..45503 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1000 45420..45503 + 1622815268.6517708-CDS-P-lacustris_contig1000:46000..46310 1622815268.6517708-CDS-P-lacustris_contig1000:46000..46310 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1000 46001..46310 + 1693493440.0635126-CDS-P-lacustris_contig1000:46000..46310 1693493440.0635126-CDS-P-lacustris_contig1000:46000..46310 Pleurocladia lacustris SAG_25_93 CDS P-lacustris_contig1000 46001..46310 +
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815268.6750252-UTR-P-lacustris_contig1000:46310..46716 1622815268.6750252-UTR-P-lacustris_contig1000:46310..46716 Pleurocladia lacustris SAG_25_93 UTR P-lacustris_contig1000 46311..46716 + 1693493440.0720866-UTR-P-lacustris_contig1000:46310..46716 1693493440.0720866-UTR-P-lacustris_contig1000:46310..46716 Pleurocladia lacustris SAG_25_93 UTR P-lacustris_contig1000 46311..46716 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1000.120.1
>prot_P-lacustris_contig1000.120.1 ID=prot_P-lacustris_contig1000.120.1|Name=mRNA_P-lacustris_contig1000.120.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=159bp
LQLEGRSHARGWRSSWRPPPFCRTRTSCWPDTLPALCSNVICRGTQKRKR back to top mRNA from alignment at P-lacustris_contig1000:44306..46716+
Legend: polypeptide CDS UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1000.120.1 ID=mRNA_P-lacustris_contig1000.120.1|Name=mRNA_P-lacustris_contig1000.120.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2411bp|location=Sequence derived from alignment at P-lacustris_contig1000:44306..46716+ (Pleurocladia lacustris SAG_25_93)CTCCAACTGGAAGGGAGATCACATGCCAGAGGGTGGCGGAGTTCGTGGCG
TCCACCACCTTTCTGCAGGACAAGGACCTCATG GCGGTGAGGGGATTGGT
CTTTAGGGACGTTGTGTCCCCGACAGCTGGCGACTCGTTGGACTTTTTCT
CTGCCCGGGTCGGGCAGGTATGCTCCTTCCCGTAGAGCCGGTAACAGGGG
GTGTGAGATTTGCTGAAGGGGGCTTGTGTTTGATTCTGGGCTGTTTCGGA
GCTCCTGTAGTAGGCCAGGCTCTGTCGTGTATTGAAGGCGAGTAAAATAC
GCGACGCATGTAGACTACTACTGCTGCTGCTGCTGCAGTTGCCAAGTGTT
GTTTTCCCACCGCCCCGCCTGTTTGCCCAGTTCCAAGCGTGCAAATTGGT
TGCCCCACTGATCTTTAGCGGAGCTGACACCTGCCTACCCGTTGCCGCCT
GGCCTTGTGTATCGCAACGCCTTGTGTCTTTTTGTGTCTGGCGTAGACTA
GGCTGCCATGTTCTTCGCGGCACTCGGCAAGGAGAAGAAGCGCTTGGGCC
AGAAGGGCGGACACAAAAATTGAAAATGCAGACTGCAGCAGTAGTGCATG
CAATCACCGTTCGAAGCAAACGCAGCCTAGTGACATGCTCGCGAAAAGAA
CGTGTCGATCGGTAGCGATGCGAGACCGCAAATGCATGTAGCACGACCTT
CGTTGCTTGCCTCCCTGCAACCATCATGGCGTACCCATTGTTTATTTTTT
CCTCTTCATCTGTTTCACACGCTGTTCACACACGCAAGGAACTACCCTTG
CCGCATTTCGTGTGCCACACTCACATGAGCTTCCTCCTCTTTCTCTTTTG
CGTGCCACGACATATTGCGTGTGAAAGAAGTGCAGGAAGGGTGTCCGGCC
AGCTTCAACCAAGATCAAGAAAAGCGACCAGCTCGTCAAAACCGTCATGG
TTTTGACATATTACGTTGGAAAAAAGTGCAGGAAGTGTGTCCGGCCAGCT
TCAACCAAGATCAAGAAAAGCGACCAGCCTTTCAAAACCATCATGGTTTT
GACGAGCTCATGGTTTTGACGATGGTTTTGACGAGCTGGTCGCTTTTCTT
GATCTTGGTTGAAGCTGGCCGGACACACTTCCTGCACTTTGTTCCAACGT
AATATGTCGTGGCACGCAAAAAAGGAAAAGAAAGGGGACGAAGTTCAT GT
GAGTGTGGCACACGAAATGCGGCAAGGGTAGTTAAGGGCGGACACAGGGT
TCGTGGGGCAGCGGAATATCAGCGGCGGGGAGGGCGACATCAACTCCGCC
AGTTGTGAGGCTGAACGGGAGGTGCCGTGGCTCGTGCCGGGTGCGGGCAG
GAAATGGTTAGGGTTAAATCGTGCCGGATCCTGTTGTCTTGAAGCTACGG
ATGCGGCCGCTAGTTAACTTGAGTCAAAAGAAGCATCGTTGCTGAGGTGA
AAATGAGAACGGTACACTGAAAGCAGCGTTTTTGTTTCGTCGCCGTCAGT
TCAAGGTGTGCGATACCGCGGTTAGACAAACAAAGAACGGCCCTTTAATT
ATTCGCGTTTCATATCGTCAAGACTACACCCACAAAAACAATCCCTAGCT
TGCTTAGAAGGCGTATTGACGGAGAGCTTCAGTCACTCTCATGGATGTAC
TTGATATTCTGTCCCTGCACCGCTCTCTTGCCGACTGCCACGCAGCCCAA
CGTGCAACCCAGGGCCAGCGCTGGAGAAGCTCCTCGCACACGACTTCAGC
TCCCCTCGGGGGCGATCGGTGGCCGAGAAGAACGCCCACATCCCCGTCAG
GAAGAGGAAGTTCCAGTTCGCCGCCGCTGTCTTCCTGCTGCCGCGGCCCA
CAATGCTCAAAGGCCTTGCAGGTCAGAGTGTACTTAGCGTAAACGACACG
AGGAAGCACACCCCCAAGGTGACAGCACGAGGAAGCACACCGGGTGACAG
TTTTTTTGGGCCAGAAACACGTGACCGAAAAACAAAATACTCTTCGACCA
AGTAG TAGTGGTGACACAAGATAGCAAACCCCTCGCGATAATGCACTCCG
TGTGATGAAGCTGTTTAGACCAAAATCGTATGACAAGGGTGTGCTTTCTT
GTGTCGTTTACGGTAGTCTGGCCTTGGCGAAGGCGGGGGCGGGGGATGGA
ACTCGAGTCCACGAGTAAATATCATCGTAGCTAGTCGTAGAAGCACGACA
ACCCTCTTCGGAGGATTAGCGTGTCTGCAACAGCAGTCTCGCTCGAAAGT
TTTTTTTTCTGTAGGTTGGACGTGGACTGCTGACAATATGCGATGAAAAA
AGTACTAAGCAATGCTTGTACCGCAGGAGGAGGGGTGGGGGGCCTCGGGG
ATAGGAAACCTTCTGTGTGACCCCGGCCGGGTGCCACCCTCCACATCACC
GACAGGTGTAA back to top Coding sequence (CDS) from alignment at P-lacustris_contig1000:44306..46716+
>mRNA_P-lacustris_contig1000.120.1 ID=mRNA_P-lacustris_contig1000.120.1|Name=mRNA_P-lacustris_contig1000.120.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=954bp|location=Sequence derived from alignment at P-lacustris_contig1000:44306..46716+ (Pleurocladia lacustris SAG_25_93) back to top