Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 183 |
| Cds size | 183 |
| Stop | 1 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815268.5888073-CDS-P-lacustris_contig1000:27166..27259 | 1622815268.5888073-CDS-P-lacustris_contig1000:27166..27259 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1000 27167..27259 - |
| 1693493440.020053-CDS-P-lacustris_contig1000:27166..27259 | 1693493440.020053-CDS-P-lacustris_contig1000:27166..27259 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1000 27167..27259 - |
| 1622815268.5988138-CDS-P-lacustris_contig1000:28742..28832 | 1622815268.5988138-CDS-P-lacustris_contig1000:28742..28832 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1000 28743..28832 - |
| 1693493440.0307417-CDS-P-lacustris_contig1000:28742..28832 | 1693493440.0307417-CDS-P-lacustris_contig1000:28742..28832 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1000 28743..28832 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1000.118.1 >prot_P-lacustris_contig1000.118.1 ID=prot_P-lacustris_contig1000.118.1|Name=mRNA_P-lacustris_contig1000.118.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=61bp
QGCEYRQLYVNICETVPAPAQGHATPSLPGGSRGDRRGLLLMLCATKPSP
AARQLANGEW* back to topmRNA from alignment at P-lacustris_contig1000:27167..28832- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-lacustris_contig1000.118.1 ID=mRNA_P-lacustris_contig1000.118.1|Name=mRNA_P-lacustris_contig1000.118.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1666bp|location=Sequence derived from alignment at P-lacustris_contig1000:27167..28832- (Pleurocladia lacustris SAG_25_93)
CAAGGTTGCGAATATCGTCAGCTATATGTAAACATTTGTGAAACGGTCCC
AGCTCCAGCCCAAGGACACGCGACGCCTTCTTTACCTGGGGCGAGCCGTG
AGACATGGGGAAAATGTCAAGGCGGTGGCCTGACGACAAGGGGGGACACA
TATCGCACAAATACGTGTGGTCATCGGTATTCGATATTCGGTTACGTGTA
CGTGGCGTACGGCTGGACGGTATGCTGTGTTTGCTCAAGGCTTTAAATCC
GAATCCGCACCATGCTACTACTGTATCCCACATTTCGAGGAATTTGCTAG
TGTCTGGCCACAACTAATACACTGGTCGATACGTGTTTACTTGGTCAGCT
GCCCATGCGTGCTGCGCGGACCGCATGAGCTTGAAGTACATCCCTTGGAG
TGCTTTCAAGTCAGCCCGCGTAAATAACCATGCGAAGTGTTCCATCCGAA
CACAATGCAGCTGAAAATAGCAGCCATGGCGTTATAATTTTAATTAGCAT
GTGTGTGAGACGTAGCTGTCTCGCAAGGTTCGCGCTGCGGCAAGGTTCTT
CTTCTTGTTGCCGCCAAGCACTCAAACACGCGAAGACGTCGATGATGGGA
CGGCGTATAGCCTGTACCGCAGCGTTAACCACTGAGGCCAATTGTGAGAC
GTAGCTGTCTCGCAAGGCTCGCGCTGCGGCAAGGTTCTTCGCGTATGTGC
GGCGTGAAGGACACGCCGGGGTCACCCTCTCGCGAGAGAGGGAGAACCGA
GGTCGGACGGAAAGAGAGTAACGACAGGGGTGAGAGAGACGAGGGGGCGA
CGCAGGAACTCGGAGAGTTCCGCGCCGTACTCTCTCCATCTGTCCAGCCA
GCGGGATCGTCTTCAAGTCCATGCAGATCCTTGGAGAACCCAAGGGTTCT
GTATGGGGACCCGGGGATTCTATGGTGGCATTCACATGTGAGAAAAAGCA
ATCATTCGCAGAGTGCGGGTGTTCACTCGATTTTCGTCTGCCAGAAGAAA
AGAGAGCCAGACTGATAGACATAATAGGTATTCGCAGCACGTGTAGGTAT
ATGTTGTAAATCTGGGTCCGTTCTCAGGAACATTCTTATTATGGTTCTAT
TCGGGGATTTGGTTCTCGGGGCATTATCTGGTCATAGGTTATGTGTCCCG
GCATGTTTTGTATGCGTGGCGACCCCATGCGTTCAGTTGGTGTTGGTGTT
GGTTTGTTTCGTGCGGTTCCACCATCTCCGTGTCCTCGTTGGTGCACGTT
CATAAGAAGTGTATAAACCCAAAGAACCCATAAGACTTCTTCCCTACAGC
AGCAAGGCGCGGCCCCTGCAGTAGATCACGTCCACACAGAAAAGACAGCA
TGTTTTTTCATGTGTTTGCCTCTCATTTTCGCGGAGGCAAACCCCTGCAG
GCACGAAAAACATTCAACACTCAGAAATCAAGTAGTCTACACTTCTGATG
AGGGGCGGCTGCAGGGTCGGGGTCAACTGCAGATTGATGCACAAGGAATG
ATCGAGCATGCCCTATTGTCGAAGTAGGATGTGGGAGGGCCTTCATAGGG
CCGGGTTTTCATCTTACTTGAAGGGCAGCCGTGGCGACCGGCGCGGACTG
CTGCTCATGCTTTGCGCGACAAAACCCAGCCCAGCAGCACGACAACTCGC
CAACGGAGAATGGTGA back to topCoding sequence (CDS) from alignment at P-lacustris_contig1000:27167..28832- >mRNA_P-lacustris_contig1000.118.1 ID=mRNA_P-lacustris_contig1000.118.1|Name=mRNA_P-lacustris_contig1000.118.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=366bp|location=Sequence derived from alignment at P-lacustris_contig1000:27167..28832- (Pleurocladia lacustris SAG_25_93)
CAAGGTTGCGAATATCGTCAGCTATATGTAAACATTTGTGAAACGGTCCC
AGCTCCAGCCCAAGGACACGCGACGCCTTCTTTACCTGGGCAAGGTTGCG
AATATCGTCAGCTATATGTAAACATTTGTGAAACGGTCCCAGCTCCAGCC
CAAGGACACGCGACGCCTTCTTTACCTGGGGGCAGCCGTGGCGACCGGCG
CGGACTGCTGCTCATGCTTTGCGCGACAAAACCCAGCCCAGCAGCACGAC
AACTCGCCAACGGAGAATGGTGAGGCAGCCGTGGCGACCGGCGCGGACTG
CTGCTCATGCTTTGCGCGACAAAACCCAGCCCAGCAGCACGACAACTCGC
CAACGGAGAATGGTGA back to top
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