Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | no signal peptide or anchor |
| Exons | 2 |
| Model size | 173 |
| Cds size | 132 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815268.532958-UTR-P-lacustris_contig1000:20231..20272 | 1622815268.532958-UTR-P-lacustris_contig1000:20231..20272 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1000 20232..20272 - |
| 1693493439.957274-UTR-P-lacustris_contig1000:20231..20272 | 1693493439.957274-UTR-P-lacustris_contig1000:20231..20272 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1000 20232..20272 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815268.544766-CDS-P-lacustris_contig1000:20272..20317 | 1622815268.544766-CDS-P-lacustris_contig1000:20272..20317 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1000 20273..20317 - |
| 1693493439.9860482-CDS-P-lacustris_contig1000:20272..20317 | 1693493439.9860482-CDS-P-lacustris_contig1000:20272..20317 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1000 20273..20317 - |
| 1622815268.5564525-CDS-P-lacustris_contig1000:21817..21904 | 1622815268.5564525-CDS-P-lacustris_contig1000:21817..21904 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1000 21818..21904 - |
| 1693493440.0062149-CDS-P-lacustris_contig1000:21817..21904 | 1693493440.0062149-CDS-P-lacustris_contig1000:21817..21904 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1000 21818..21904 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1000.117.1 >prot_P-lacustris_contig1000.117.1 ID=prot_P-lacustris_contig1000.117.1|Name=mRNA_P-lacustris_contig1000.117.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=44bp
GHNFAKEEATATTRLSLERRRVGPSRTPKAPSSTDLFWGQRRR* back to topmRNA from alignment at P-lacustris_contig1000:20232..21904- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-lacustris_contig1000.117.1 ID=mRNA_P-lacustris_contig1000.117.1|Name=mRNA_P-lacustris_contig1000.117.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1673bp|location=Sequence derived from alignment at P-lacustris_contig1000:20232..21904- (Pleurocladia lacustris SAG_25_93)
GGCCATAACTTTGCAAAGGAGGAAGCAACGGCAACAACAAGGCTATCCCT
AGAGAGGCGGAGAGTTGGTCCATCTCGCACGCCCAAGGTGAGGGGCCGTG
GGGTTTTGTGCATGTCGGGGAATATCGTTGAAACTACTCTCTCTCGCAAT
AAGGACCAAACAAAAAAGAGCCGTTTTTGGGACTGCTGAGTGATGTGTAA
CCATTCAAAACGCATGGTAGAGAGAGGCTTTAGGCCAACGATATCCGCAA
ATAGCAGTCACTGGCGTGAGTTCATGAACATGTCCTCTGCACGGGTCGCA
AAAGCAGCGCATATGGTCTAGTTTTGATTGCACACGATGTGCAAATGTGA
ACCGAAGTGTTTTTCGATGTTGACTTTGTGACGTTTGTCTTTTTTTTGTT
GCTCCGGGTGTGGCCACTCGAAAACGCGTCCCAGAGGGAGGCCTTAGCCA
ACGATACCTAGAAACAGCAGTCACTCCTGGTGTGTGGGCATACACATGCC
CTCTGCAGGCAGCTCGAAAACAGGGCGATATGTGTCTTGTCGACCGCGCA
CCAGCCGAAAACGTGAACCGAAGCATTATGTTACCGCTTGAATCAGCCTT
TTTTCACCCTGGAAAAAATGCGCCTCCAGGTCCGTAAGAAGGTCAAACGG
GGCCTGCCGTTCAGATCCCACGAAATAAAATCCATTTCATATTTCCCCAA
ATAAAATCTGAAAATATCCCACCGTAAGAAACGGCCTAATTATTTTTTTG
AGCTGAGGCTTCGCCAGACCTTCAACTAGCTGCGATCTGATACAACCGTC
AAAATACCCGCGCAGAAGCACAGACATTTGTCCAGGTCAGGTGCCTTAAT
CCCCTCGGTTTACCCCCCAACAATGGCGAACCCGCCCCCCACCCGAAATG
TAGGCCGAAGAGTGGTCAAAACCTGAAATTGTCCCTGCGTTAGGGAAAAA
AAAACGAGAAAAATATGCCATCCTCTCCGGTGTATTTCCCCCTGTAGTAG
TGTTTTTCCGACGAGTGCGGCCCGGGGTATCACTAACTTTCATTTCTTTT
GTTATCACTTCGAAGCAAGTGCCCCGCTTCTGACACCAAATACGTCGTTT
CCATTTAGGCACTTAAGAGAGTCTGTGTCTGAGTGTCGACCCTGGTTGAT
CGCAACGCAACTGTGTTTGTGACTGTTTTGCCCTGTTTCGCCATGATGCA
ACCGGTGGTAGGACCTTCTACCTGTTGCCAAGGAATTCTTTGTCGACATC
TCCGGGTATAACCGTCGCCCTAACCGAGTTCATCCCCGCAAACGGCGGCG
ATGACTACAAGAGCGACGACGCCTTGGAACCAAATTTGGATGTAAAGCCT
GGTAATGCGGGGCGACCTTTTCGTCACTCGGCTAAACCTCGCAATCGACG
TTTGTGTGTATGGCATGGAACGGTACGGTAACATTTCGATCTGAAATAAA
TTCAATGTTCTCCGTTCTGCCGCGCATCCACTCAGTCTTCGTCCAGTCTT
CGAGGTAATAAACGTGGACGCCCTCATTAGATTGCGATCCTCACGATGAT
ACCCTCCGCGGCTTGCTGGTTTTAACGTCCCGTACAGGCGCCATCTAGCA
CGGACTTATTTTGGGGGCAACGTCGACGGTGACCCGCGCTAAAGTCTTCA
AACGGACGTGCGGGCGTTCCTCC back to topCoding sequence (CDS) from alignment at P-lacustris_contig1000:20232..21904- >mRNA_P-lacustris_contig1000.117.1 ID=mRNA_P-lacustris_contig1000.117.1|Name=mRNA_P-lacustris_contig1000.117.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=264bp|location=Sequence derived from alignment at P-lacustris_contig1000:20232..21904- (Pleurocladia lacustris SAG_25_93)
GGCCATAACTTTGCAAAGGAGGAAGCAACGGCAACAACAAGGCTATCCCT
AGAGAGGCGGAGAGTTGGTCCATCTCGCACGCCCAAGGGCCATAACTTTG
CAAAGGAGGAAGCAACGGCAACAACAAGGCTATCCCTAGAGAGGCGGAGA
GTTGGTCCATCTCGCACGCCCAAGGCGCCATCTAGCACGGACTTATTTTG
GGGGCAACGTCGACGGTGAGCGCCATCTAGCACGGACTTATTTTGGGGGC
AACGTCGACGGTGA back to top
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