mRNA_P-lacustris_contig100.116.1 (mRNA) Pleurocladia lacustris SAG_25_93
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-lacustris_contig100.116.1 vs. uniprot
Match: D8LEF4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF4_ECTSI) HSP 1 Score: 898 bits (2321), Expect = 2.220e-279 Identity = 871/1751 (49.74%), Postives = 969/1751 (55.34%), Query Frame = 2 Query: 800 LRRLQGDTEPSFPSRDGSTPAAESPLFSLPHMGPSRSPSVGSRGEGRRETRRRECPLETMSGDIGSYSARAGT---GETEGEAXXXXXELPAGSGSLLELRDALRSREKDLLRLKRDVAVVRTSAGSFKHLAASLGSSDADRPES----QWRRNGSELFRTGFDE----------------DGTSGAGEGRWAENDEPAAFRSHQSKQDATLGGLLLQRHSVDSALAGTASLFGTTSTGPPQTDSELARSRQVMPXXXXXXXXLTAASKGSAVVAVSGSPLVVSAHEGLRQMRAVLEQRALEAGRAKNNSKEMIKSLNDVSARLRRSESKRNAQAAELAEARAEAHAAKAELSRVLLRHRAKEKAALAAQQEKIRDKAVAARKEAAAAAPTGLLAAPEQQRQLRERDAEISRLRDRLETATGELSEEQGSNASLRARLEASEREIRRVRERAVAAEEEAEVAAAAKVAXXXXXXXXXXXXXXXXXXXXXXXXXXXEGRRQAREAMRARE-----------------SLKAEREGTARLALELEAAVRERTQAVEKQAEAEAEAGRLHVKLSSVSATAEENQALRRERDTARESLRTAEMELANVTAALVLAREGQEEERSRFDRESKRATALGEELVASEARRQVQEEEIALVRKQVSRLDAKIEGDMSRSKAKSDATARATAAVAEREANSLRADLREAKAELAASREXXXXXXXXXXXSLKAELVVAKEAAERXXXXXXXXXXXXXXXXXXXXAQARKLQRAAQAAQEDKDTLKRGLVASQTACAELRAERSRLLSELEHAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDAAAAANVLRTRTDLEGRLALALAESTEARAELKRLKRKVE-ICDREHRGTTA---LGTARRTRR---SGGETGDEDDGEFSVDGSRSHRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSGDRGSSSGLDDPRWPFGGRATRRKGGAAANERHNSIAAAPRTQGSGRGRIGRRRRAFSMDSTRSRVGDAGDRDHSHNSLGDFSDSGEDDSRVVSRAAIREASERLRFGAARLLDVRKEERKMAEDKVARLRQDLRDSESREADVTARLEESRELSREQTGFVEGVWKERHRLESELAARCEEVKRLRSSEDVARTAATTLGGKVEDLSAALKQEQARAKREAEAAVAAEARDAMDALRGQLNDLRREVDRTKQGQEHARSGGVGGGSGGSFRAAEGSVAAGVAFNSGNGGSRRKENFSSLNDAGSGVRGKEWRRGSLANAQGVVASPSSPSLVALEGEFQRLRIKYEKAKGRIVALEELVAASRRVSTQARREFQGALEALKLSQELLLKIHRQRQSRDDAVFVGPNDVTTSTPQPTAAPALSHP-QSGTTTHESRLETAGCTVDAGAGAGFTPSGGTA--ADPNGERPTSAATPA-STDVHVQELAAQASKLRGMSGNVKQLLQLAVGEVQGALEDTRESLGAA-AAAAEAGTQTVEGIC-LTKESFEALEQDLGETKATARALEAEKSRLDGELSAAFEELAKVQDLLREKAAEVLVLEAQVARLETERREAHAVASAA-NSRLAEAQLAERELSDTRVRLHAALATQGELRGRCAELSLASSAFASEVAKQKEERAKSQERARLAAEASAIEXXXXXXXXXXXXXXXXXXXXAERGRLERELAATRAEAREIDSDVAQVLDALASSEKERCRLEVELDRQTNIARAAR 5890
L RL+GD EPS P+ T +AE L P + S S SV G+G E+ RRE + SGD S S AGT G +G XXX A SG L ELRDALRSRE+DLLRLKRDV+VV TSA F+HL+ASLGS + +R S + R +G + D+ DG+ G G N+E AFR H +GG+LL+R DSAL GTA F T +T +D+ELA SR++ XXXX SKG+A++A SGSPLV SAHEGL++MRAVLEQRALE GRA ++SKEM SLNDVSARLRRSE KRNAQAAELA + K +D A G LA E ++ RLRDRLETATGE AS++E RR RERA AAEEEA A A XXXXXXXXXXXXXXX R REA + E A AEAEAGRLH ++RRERD ++ E+AN+TAALVLAREGQE ER RFDRESKRA ALGEELVASEARR+VQEEEI+LVRKQVSRLDAKIEGDMSR KA SDATARATAA AEREANSLRA XXXXXXX SLKAEL A+EA XXXX RAA+AAQ DKDT LSELEHAA+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +R R DLEGRLALA+AE+ E+RAE +RLKRK++ + DRE GT A +G + RT+R GG G +DD F +DG R HR+ G G S LDDPRW FG R RAFS+DS RS VGDA R + G D RVVSRA +RE +ERLRF AARLL VRKEERK A D VA LR+DLRDSESREA+VTARLEESRELSREQTGFVEGVWKERHRL +RLR+SED ARTAAT L GKV DLSAAL+QEQARAKREAEAAVAAEARDAM+ALR QL+DLR+ EGEFQRLR KYEKAKGRIVALEELVAASRRVS QARREF+GALEALKLSQELLL+IHRQRQ+ P D T T P AAPA H Q T ES G + TPS A A GERPTSAAT + STD HV ELAAQASKLRGMSGNVK+LLQLA GEVQGALEDTR+SLG A AAAA GTQT EG+ T+ E LEQ + KA +A EAEK RL GELSAA EL K+Q LL +K +E +VLEA VARLETER EA ASAA N LAEA E LSDT+ RL AALATQ ELR RCAELSLAS AFASEVAKQKEERA+SQERARLA E AER RLEREL ATRAEAR+ID+DVAQVLDALASSEKER RLE EL RQT AR R
Sbjct: 262 LLRLRGDREPSLPTAVSRTASAEPLLLLSPLIRSSTSASVLGSGDGAWESFRRE---HSASGDNSSSSGDAGTAVAGTEDGMPAAXXXXXXAESGPLFELRDALRSREEDLLRLKRDVSVVATSARGFRHLSASLGSGNVERSSSFSFQRSRGHGKDASGANTDDSDLPSGNGSAFRGGGSDGSRAGGAGVDKINEE--AFRPHHG---GAVGGVLLRRQPADSALPGTALSFRTAATPGRPSDNELASSRRLXXXXXXQQGSTATVSKGNAIIAASGSPLVASAHEGLQRMRAVLEQRALEVGRAHDDSKEMANSLNDVSARLRRSERKRNAQAAELA--KXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSKDATAARXXXXXXXXXXGSLA--ETAQRXXXXXXXXXRLRDRLETATGEXXXXXXXXXXXXXXXXASDKETRRARERAAAAEEEAGAATA----------------XXXXXXXXXXXXXXXXAERAQREAEASAELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXAEAEAGRLH--------------SVRRERD-------SSVAEVANLTAALVLAREGQEAERGRFDRESKRAAALGEELVASEARRKVQEEEISLVRKQVSRLDAKIEGDMSRVKANSDATARATAAGAEREANSLRASXXXXXXXXXXXXXXXXXXXXNADASLKAELAAAREAEAELAASEARAKXXXX--------------RAARAAQLDKDTXXXXXXXXXXXXXXXXXXXXXXLSELEHAATSAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAF--------------------VRARKDLEGRLALAVAEAAESRAEAQRLKRKLQAVSDREDGGTPAGLGVGFSARTKRRNGGGGTRGKDDDYLFGLDGDRPHREGLQEALRESCGVMERIASALSAAAADRRTSRRPGSDGGSE-LDDPRWAFGRRXXXXXXXXXXXXXXXXXXXXXXX-------XXXXXRAFSVDSNRSGVGDADLRQDGFGDCAESGGEGHDLRRVVSRAEVREVAERLRFEAARLLGVRKEERKAAGDTVASLRRDLRDSESREAEVTARLEESRELSREQTGFVEGVWKERHRLXXXXXXXXXXXERLRASEDAARTAATVLDGKVADLSAALRQEQARAKREAEAAVAAEARDAMEALRQQLDDLRK-----------------------------------------------------------------------------------------EGEFQRLRAKYEKAKGRIVALEELVAASRRVSAQARREFKGALEALKLSQELLLRIHRQRQNN---AVADPTDTATPTTHPAAAPAPKHHHQPDAATRESHP---GAPDE-------TPSAAPADLAATAGERPTSAATSSLSTDAHVHELAAQASKLRGMSGNVKRLLQLAAGEVQGALEDTRDSLGVAGAAAATVGTQTAEGLDGPTRGEVECLEQQVVRMKAEGQAREAEKLRLSGELSAAVGELTKIQGLLEDKMSEAVVLEAHVARLETERNEAREAASAAANDGLAEA---EASLSDTQARLEAALATQRELRSRCAELSLASGAFASEVAKQKEERARSQERARLAT----AELRDLSAKFSRASKTAAADAAAERDRLERELVATRAEARDIDTDVAQVLDALASSEKERRRLEAELHRQTKAARVQR 1812 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig100.116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig100.116.1 >prot_P-lacustris_contig100.116.1 ID=prot_P-lacustris_contig100.116.1|Name=mRNA_P-lacustris_contig100.116.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=316bp MEGDRNLVPAGDGIGCGASRPSNDSFKDDIQAIGRAVERLREGFASTISSback to top mRNA from alignment at P-lacustris_contig100:235665..248987+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig100.116.1 ID=mRNA_P-lacustris_contig100.116.1|Name=mRNA_P-lacustris_contig100.116.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=13323bp|location=Sequence derived from alignment at P-lacustris_contig100:235665..248987+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig100:235665..248987+ >mRNA_P-lacustris_contig100.116.1 ID=mRNA_P-lacustris_contig100.116.1|Name=mRNA_P-lacustris_contig100.116.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1896bp|location=Sequence derived from alignment at P-lacustris_contig100:235665..248987+ (Pleurocladia lacustris SAG_25_93)back to top |