mRNA_P-lacustris_contig100.110.1 (mRNA) Pleurocladia lacustris SAG_25_93
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-lacustris_contig100.110.1 vs. uniprot
Match: A0A6H5KSG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG6_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 1.230e-13 Identity = 53/135 (39.26%), Postives = 72/135 (53.33%), Query Frame = 3 Query: 372 GYAPIHVAARHGKTEILQHLLLKGS*-QRHDGRSRDDSSLPCTFLW*PFPAAQALLAAGADVNLRCGQYKDSVMHLAARKGHVETLRAMVRHGADVEAGDVDGNTALDVAAEYNRAAAIDDVLVEAGANIKATNR 773 G+ P+H+AA G +++ +L +G+ D + R AAGAD++LR G +S + AA G V+ +RAMVRHG DV A D G TAL AE N+A AID LVEAGA++ A R Sbjct: 2 GHTPLHLAAGLGCDDMMPLILQQGAVVDALDNQRRXXXXXXXXXXX--XXXXXXXXAAGADLSLRSGDNNESALETAAINGDVDVVRAMVRHGVDVNARDSQGLTALHAVAESNQAGAID-ALVEAGAHVNARGR 133
BLAST of mRNA_P-lacustris_contig100.110.1 vs. uniprot
Match: A0A8C4AC72_9TELE (Ankyrin repeat and SOCS box containing 10 n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4AC72_9TELE) HSP 1 Score: 80.1 bits (196), Expect = 6.420e-13 Identity = 65/202 (32.18%), Postives = 98/202 (48.51%), Query Frame = 3 Query: 381 PIHVAARHGKTEILQHLLLKGS*QR---------HDG--------------------RSRDDSSLP---CTFLW*PFPAAQALLAAGADVNLRCGQYKDSVMHLAARKGHVETLRAMVRHGADVEAGDVDGNTALDVA----------AEYNRAAAIDDVLVEAGANIKATNRDDETPLRRAAFSVRSKAVVALLKHGARVN 860 P+H+ A G TE L+HLLL+G+ H+ + +D +P CT + A+ LL GADVN R D+ +H+AAR G +E + +R+GA++E + +G T L+ A A Y++ + +LV AGAN+K ++ D++TPL A SV V LL+HGA VN Sbjct: 119 PLHITASRGFTECLRHLLLRGANVNLAPGGTTALHEACEECQAESXXXXXXXXXXANAADEDGHMPLHLCTNVD-SLECAKYLLQFGADVNGRSLDEDDAPLHVAARHGLLEHVSLYLRYGANLEHRNDEGATPLNAACSQPQEPPSLARYHQ---VCHLLVSAGANVKTSDADNQTPLHMACKSVNPDVVELLLQHGASVN 316
BLAST of mRNA_P-lacustris_contig100.110.1 vs. uniprot
Match: A0A8C4ADW0_9TELE (Ankyrin repeat and SOCS box containing 10 n=2 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4ADW0_9TELE) HSP 1 Score: 80.1 bits (196), Expect = 7.180e-13 Identity = 65/202 (32.18%), Postives = 98/202 (48.51%), Query Frame = 3 Query: 381 PIHVAARHGKTEILQHLLLKGS*QR---------HDG--------------------RSRDDSSLP---CTFLW*PFPAAQALLAAGADVNLRCGQYKDSVMHLAARKGHVETLRAMVRHGADVEAGDVDGNTALDVA----------AEYNRAAAIDDVLVEAGANIKATNRDDETPLRRAAFSVRSKAVVALLKHGARVN 860 P+H+ A G TE L+HLLL+G+ H+ + +D +P CT + A+ LL GADVN R D+ +H+AAR G +E + +R+GA++E + +G T L+ A A Y++ + +LV AGAN+K ++ D++TPL A SV V LL+HGA VN Sbjct: 167 PLHITASRGFTECLRHLLLRGANVNLAPGGTTALHEACEECQAXXXXXXXXXXXXANAADEDGHMPLHLCTNVD-SLECAKYLLQFGADVNGRSLDEDDAPLHVAARHGLLEHVSLYLRYGANLEHRNDEGATPLNAACSQPQEPPSLARYHQ---VCHLLVSAGANVKTSDADNQTPLHMACKSVNPDVVELLLQHGASVN 364
BLAST of mRNA_P-lacustris_contig100.110.1 vs. uniprot
Match: D7FHH2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH2_ECTSI) HSP 1 Score: 80.5 bits (197), Expect = 7.430e-13 Identity = 56/124 (45.16%), Postives = 74/124 (59.68%), Query Frame = 3 Query: 528 ALLAAGADVNLRCGQYKD-SVMHLAARKGHVETLRAMVRHGADVEAGDVDGNTALDVAAEYNRAAAIDDVLVEAGANIKA---TNRDDETPLRRAAFSVRSKAVVALLKHGARVNPQNSTVAHG 887 ALL AG D + R G+ K S + LAAR+GHVE ++A++RHG DV A D +G TAL AA + AI+ L+EAGA I A T TPL A+ SKA ++L+KHGA V+ + G Sbjct: 160 ALLDAGGDSSFRYGKDKAFSALSLAARRGHVEVMQALIRHGVDVNAPDSNGCTALHSAAMGDTVGAIN-ALIEAGAKINAQGGTYGKRYTPLHMASERGSSKAALSLVKHGADVHRSGKVCSFG 282
BLAST of mRNA_P-lacustris_contig100.110.1 vs. uniprot
Match: A0A091GA79_9AVES (Ankyrin repeat and SOCS box protein 10 (Fragment) n=2 Tax=Cuculus canorus TaxID=55661 RepID=A0A091GA79_9AVES) HSP 1 Score: 77.0 bits (188), Expect = 6.060e-12 Identity = 62/213 (29.11%), Postives = 96/213 (45.07%), Query Frame = 3 Query: 381 PIHVAARHGKTEILQHLLLKG-----------------------------S*QRHDGRSRDDSSLPCTFLW*P--FPAAQALLAAGADVNLRCGQYKDSVMHLAARKGHVETLRAMVRHGADVEAGDVDGNTALDVAA-------EYNRAAAIDDVLVEAGANIKATNRDDETPLRRAAFSVRSKAVVALLKHGARVNPQN---STVAHGSIQ 896 P+H+ A G T+ LQ LLL+G S +D P P Q LL GA VN R D+ +H+AAR G V+ ++ ++RHGA++EA + +G T L+ A + +R + +LVE+GA++ A +RD + PL A+ + ++ LL GA VN N +T H ++Q Sbjct: 82 PLHITASRGYTDCLQLLLLRGAAVDFAPGGKTAXXXXXXXXXXXXXXXXXSCGADPEAISEDGYRPLHLCKSPDSIRCVQQLLQHGASVNSRTDTEDDTALHVAARHGLVDHVQLLLRHGAELEAKNNEGQTPLNAACAQPHQPQDMDRFYLVCRLLVESGASVNAADRDRQHPLHLASKNANAQIAELLLARGANVNVMNYSGNTALHNALQ 294
BLAST of mRNA_P-lacustris_contig100.110.1 vs. uniprot
Match: A0A6H5JFR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR1_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 8.230e-12 Identity = 46/112 (41.07%), Postives = 68/112 (60.71%), Query Frame = 3 Query: 384 IHVAARHGKTEILQHLLLKG---S*QRHDGRSRDDSSLPCT-----FLW*PFPAAQALLAAGADVNLRCGQYKDSVMHLAARKGHVETLRAMVRHGADVEAGDVDGNTALDV 695 +H A R+G E++ +LL G S + G + + CT L+ +A+AL+AAGA++N+RCG K +V+ LAA KG V+ LRA+V++GADV A D D + AL V Sbjct: 5 LHAAVRYGYAEVVTNLLEHGACVSIKDARGSTPLQVAAECTPLFGALLFGHLTSARALMAAGAEINVRCGLSKRTVLSLAAEKGDVDILRALVKNGADVTAVDNDRDMALHV 116
BLAST of mRNA_P-lacustris_contig100.110.1 vs. uniprot
Match: D7FKL4_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI) HSP 1 Score: 70.9 bits (172), Expect = 5.750e-10 Identity = 45/110 (40.91%), Postives = 66/110 (60.00%), Query Frame = 3 Query: 546 ADVNLRCGQYKDSVMHLAARKGHVETLRAMVRHGADVEAGDVDGNTALDVAAEYNRAAAIDDVLVEAGANIKATNRDDETPLRRAAFS-VRSKA--VVALLKHGARVNPQ 866 AD+N R G + S + + A +GHV+ +R ++ HGADV+A + G AL A N+ A+D VL+ AGAN ++ + T L AA + R++A + LLKHGA VN Q Sbjct: 150 ADINRRYGDREISALDIGAGEGHVDFIRTLIEHGADVDATNYGGVAALHHATANNKVEAMD-VLLRAGANARSMSESGHTVLHMAAITRTRTEAATLAVLLKHGADVNAQ 258
BLAST of mRNA_P-lacustris_contig100.110.1 vs. uniprot
Match: D7G744_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G744_ECTSI) HSP 1 Score: 68.2 bits (165), Expect = 7.150e-9 Identity = 52/119 (43.70%), Postives = 70/119 (58.82%), Query Frame = 3 Query: 549 DVNLRCGQYKD-SVMHLAARKGHVETLRAMVRHGADVEAGDVDGNTALDV----------AAEYNRAAAIDDVLVEAGANIKATNR--DD--ETPLRRAAFSVRSKAVVALLKHGARVN 860 D +LRCG+ + S + LAAR GHVE ++A++RHGADV A D +G TAL AA ++ AID L+EAGANI DD TPL A+ S+A ++L+KH A V+ Sbjct: 115 DPSLRCGKDEAFSTLGLAARGGHVEVMQALIRHGADVNAPDSNGCTALHTXXXXXXXXXSAAIGDKVGAID-TLIEAGANINVQGGKYDDARSTPLHMASKKGSSEAALSLVKHRADVH 232
BLAST of mRNA_P-lacustris_contig100.110.1 vs. uniprot
Match: L8GQ59_ACACA (MYND finger domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GQ59_ACACA) HSP 1 Score: 63.9 bits (154), Expect = 1.760e-7 Identity = 53/160 (33.12%), Postives = 76/160 (47.50%), Query Frame = 3 Query: 375 YAPIHVAARHGKTEILQHLLLKGS*Q---RHDGRSRDDSSLPCTFLW*PFPAAQALLAAGADVNL--------RCG---------QYKDSVMHLAARKGHVETLRAMVR--HGADVEAGDVDGNTALDVAAEYNRAAAIDDVLVEAGANIKATNRDDETP 788 + P+H AA HG I+Q L K R+DG++ D + L FL AL+ DV + R G Q K+S++HLAA V+ LR ++ HGADV+A D +GNTAL +A + A+ + AG + +A N TP Sbjct: 338 HTPLHAAASHGHLLIVQMLYQKADKSKNVRYDGQADDGAVLSPAFL--------ALMNEHYDVAMWLVRAEDKRLGKESDPQAVRQLKESLLHLAAMLDSVDVLRLLIEGVHGADVDARDSEGNTALHLAYQVGNDDAVAYLRDRAGCDAEAVNHRGLTP 489
BLAST of mRNA_P-lacustris_contig100.110.1 vs. uniprot
Match: D8LL12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL12_ECTSI) HSP 1 Score: 62.0 bits (149), Expect = 4.450e-7 Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 3 Query: 546 ADVNLRCGQYKDSVMHLAARKGHVETLRAMVRHGADVEAGDVDGNTA 686 ADVN+RCG K +V+ LAA KGHV+ LRA+V+HGADV A D D +TA Sbjct: 166 ADVNVRCGLLKRTVLSLAAEKGHVDILRALVKHGADVTAVDNDRDTA 212 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig100.110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig100.110.1 >prot_P-lacustris_contig100.110.1 ID=prot_P-lacustris_contig100.110.1|Name=mRNA_P-lacustris_contig100.110.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=105bp MHLAARKGHVETLRAMVRHGADVEAGDVDGNTALDVAAEYNRAAAIDDVLback to top mRNA from alignment at P-lacustris_contig100:163732..164768+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig100.110.1 ID=mRNA_P-lacustris_contig100.110.1|Name=mRNA_P-lacustris_contig100.110.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1037bp|location=Sequence derived from alignment at P-lacustris_contig100:163732..164768+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig100:163732..164768+ >mRNA_P-lacustris_contig100.110.1 ID=mRNA_P-lacustris_contig100.110.1|Name=mRNA_P-lacustris_contig100.110.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=630bp|location=Sequence derived from alignment at P-lacustris_contig100:163732..164768+ (Pleurocladia lacustris SAG_25_93)back to top |