mRNA_P-lacustris_contig100.107.1 (mRNA) Pleurocladia lacustris SAG_25_93
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-lacustris_contig100.107.1 vs. uniprot
Match: D7FIK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK1_ECTSI) HSP 1 Score: 388 bits (996), Expect = 1.150e-127 Identity = 213/253 (84.19%), Postives = 230/253 (90.91%), Query Frame = 2 Query: 152 YVVLDYTVPGLGFVAGVLKSFLEWVEENPGLGALAFALVYIFTTVCFIPGSLLTLGAGLVFGRALGTGWGVLVGTVSVMVGATIGAILAFLLGRFVLQEQAKGLFNKFKILKAVNRAIKVQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFKDYAIGCVGFLPGTTAYVFIGTTASGLLGDDDEQEXSESNSS-GTVQLIVGIVGGIATVIAVVLISIYAKRALNKVLEEDRIAQEALEREGGLEGGVSGNGG 907 YV+LDYTVPGLGFVA L SFLEWVE+NPGLGALAFALVY+FTTVCFIPGSLLTLGAGLVFGRALGTG G+LVG+++V+ GAT+G+ILAFLLGRFVLQEQA+GLFNKFK+LKAVNRAIK QGLKLVILLRLSPVVPFSAFNYVMGVTDVFF+DYAIGCVGF+PGT A+VFIGTTASGLLGDD E+ X GTVQLIVGIVGGIATVIAVVLISIYAKRALNKVLEEDR+ QEALE GLE SGNGG Sbjct: 57 YVILDYTVPGLGFVADTLTSFLEWVEDNPGLGALAFALVYVFTTVCFIPGSLLTLGAGLVFGRALGTGLGILVGSLAVLAGATVGSILAFLLGRFVLQEQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFRDYAIGCVGFIPGTVAFVFIGTTASGLLGDDSEEXXXXXXXXXGTVQLIVGIVGGIATVIAVVLISIYAKRALNKVLEEDRVEQEALEM--GLE---SGNGG 304
BLAST of mRNA_P-lacustris_contig100.107.1 vs. uniprot
Match: A0A7S2Y1P9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1P9_9STRA) HSP 1 Score: 274 bits (701), Expect = 8.920e-84 Identity = 150/243 (61.73%), Postives = 192/243 (79.01%), Query Frame = 2 Query: 143 IVVYVVLDYTVPGLGFVAGVLKSFLEWVEENPGLGALAFALVYIFTTVCFIPGSLLTLGAGLVFGRALGTGWGVLVGTVSVMVGATIGAILAFLLGRFVLQEQAKGLFNKFKILKAVNRAIKVQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFKDYAIGCVGFLPGTTAYVFIGTTASGL---LGDDDEQEXSESNSSG--------TVQLIVGIVGGIATVIAVVLISIYAKRALNKVLEE 838 +++YV++DY+VP LG V VL FL WVE+NP G AFA VY+F TV FIPGSLLTLGAGLVFGRALG G GV +G+ +V++GA+IGAI+AF+LGR+VLQ+ A+ LFNKFKI++AV++AI+ QGLKL +LLRLSPVVPF+AFNY+MG+T + KDY IGC+G +PGT AYVFIG++ASG+ G+D+EQ + ++ G TV LIV IVG IATVIAV LIS YAK+ALN++L E Sbjct: 36 LIIYVIVDYSVPSLGNVNIVLSDFLAWVEDNPIEGVFAFACVYMFCTVAFIPGSLLTLGAGLVFGRALGIGRGVALGSFAVILGASIGAIIAFILGRYVLQDTAQVLFNKFKIMRAVDKAIESQGLKLCLLLRLSPVVPFNAFNYIMGLTAISLKDYTIGCLGIIPGTVAYVFIGSSASGIGDMKGNDEEQNDNTKDADGEESSSDNDTVFLIVIIVGAIATVIAVFLISWYAKKALNRILNE 278
BLAST of mRNA_P-lacustris_contig100.107.1 vs. uniprot
Match: A0A7S3YEX9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEX9_HETAK) HSP 1 Score: 244 bits (622), Expect = 3.520e-72 Identity = 138/245 (56.33%), Postives = 174/245 (71.02%), Query Frame = 2 Query: 143 IVVYVVLDYTVPGLGFVAGVLKSFLEWVEENPGLGALAFALVYIFTTVCFIPGSLLTLGAGLVFGRALGTGWGVLVGTVSVMVGATIGAILAFLLGRFVLQEQAKGLFNKFKILKAVNRAIKVQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFKDYAIGCVGFLPGTTAYVFIGTTASGLLGD-DDEQEXSESNSSGT-----------VQLIVGIVGGIATVIAVVLISIYAKRALNKVLEED 841 I++YVVLDYT+P LG V +L SFL WVEE+PG G +AFA VY+ TTV FIPGS+LTLGAGLVFGRAL +AFLLGR+VLQ+ A+ LFNKF +LKAV++AI+ +GL+LVILLRLSPV+PFSAFNYVMG+T V F+ Y +GCVG LPGT AYVFIGT+A+GLLGD DD + SE V ++V +VG ATV+AVVLI++ ++RAL +VL ++ Sbjct: 60 IIIYVVLDYTLPSLGHVNRILTSFLLWVEEHPGEGVVAFASVYVLTTVLFIPGSILTLGAGLVFGRALXXXXXXXXXXXXXXXXXXXXXXIAFLLGRYVLQDSAQKLFNKFSVLKAVDKAIENEGLRLVILLRLSPVIPFSAFNYVMGLTRVMFRQYVLGCVGMLPGTVAYVFIGTSAAGLLGDADDGSQESEXXXXXXXXXXXXXXXRLVNIVVLVVGAAATVLAVVLITVASRRALRRVLMKE 304
BLAST of mRNA_P-lacustris_contig100.107.1 vs. uniprot
Match: A0A7S4JVV3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JVV3_9STRA) HSP 1 Score: 205 bits (521), Expect = 9.570e-58 Identity = 115/247 (46.56%), Postives = 165/247 (66.80%), Query Frame = 2 Query: 146 VVYVVLDYTVPGLGFVAGVLKSFLEWVEENPGLGALAFALVYIFTTVCFIPGSLLTLGAGLVFGRALGTGWGVLVGTVSVMVGATIGAILAFLLGRFVLQEQAKGLFNKFKILKAVNRAIKVQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFKDYAIGCVGFLPGTTAYVFIGTTASGLLGDDDEQEXSESNSSGTVQLIVGIVGGIATVIAVVLISIYAKRALNKVLEEDRIAQEALEREGGLEG 886 +V+V++D T G ++ +++FL W+EENP G F VY+ TV F+PG +LTLGAG VF A GTG G+ VGT+SV VGA++G++LAFL+ R++L+E A GL KF I +A+++A++ +GLK++ILLRLSPV+PF+A NYV GVT V FKDY++ LPGT YVF+G +A L S S + + +VG + ++AV L S YAK+ LNK+L+++ +EA ER G EG Sbjct: 29 IVFVIIDSTTNG--YIKDGIQTFLRWIEENPIEGFFMFMGVYVLATVLFVPGLILTLGAGYVFSNAFGTGLGLFVGTISVFVGASLGSMLAFLISRYILREWAVGLTEKFPIFRAIDQALEEKGLKIIILLRLSPVIPFNALNYVCGVTAVSFKDYSLALFAMLPGTILYVFLGASAQSLA------TIGSSTDSKALTISTVVVGVVLGIVAVALSSRYAKKELNKILDQE---EEANERIAGGEG 264
BLAST of mRNA_P-lacustris_contig100.107.1 vs. uniprot
Match: A0A6H5JID7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JID7_9PHAE) HSP 1 Score: 200 bits (509), Expect = 4.190e-55 Identity = 105/227 (46.26%), Postives = 159/227 (70.04%), Query Frame = 2 Query: 203 LKSFLEWVEENPGLGALAFALVYIFTTVCFIPGSLLTLGAGLVFGRALGTGWGVLVGTVSVMVGATIGAILAFLLGRFVLQEQAKGLFNKFKILKAVNRAIKVQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFKDYAIGCVGFLPGTTAYVFIGTTASGLLGDDDEQEXSESNSSGTVQLIVG----IVGGIATVIAVVLISIYAKRALNKVLEEDRIAQEALERE 871 L++ EW+E+NP G + FAL++ +T+ F+PG LLT+GAG+ FGRALG G+GVL G+V+V++GA + ++AF LGR+VL EQA+ +++IL AVN AI+ G+K++ILLRLSP+VPFS FN++ G+T V +DY +G VG +PGT A+V+IG + +G + +EQE S + + I+ IVG +A V+A+V ++IYA+RAL + L E + A + E Sbjct: 93 LETSFEWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTM---NEQEAMNSGEADRTECIIRMATLIVGAVAAVLAIVAVTIYARRALKQALVESELDANADKEE 316
BLAST of mRNA_P-lacustris_contig100.107.1 vs. uniprot
Match: A0A7S2A6Q3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6Q3_TRICV) HSP 1 Score: 195 bits (496), Expect = 1.410e-53 Identity = 102/234 (43.59%), Postives = 159/234 (67.95%), Query Frame = 2 Query: 143 IVVYVVLDYTVPGLGFVAGVLKSFLEWVEENPGLGALAFALVYIFTTVCFIPGSLLTLGAGLVFGRALGTGWGVLVGTVSVMVGATIGAILAFLLGRFVLQEQAKGLFNKFKILKAVNRAIKVQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFKDYAIGCVGFLPGTTAYVFIGTTASGLLGDDDEQEXSESNSSGTVQLIVGIVGGIATVIAVVLISIYAKRALNKVLEEDR 844 ++V++++D G FV G ++ L+W+EENP G F VY TV F+PGSLLTLG+G VF + G G+GVL+ T++V VGAT+GA++AF+LGR++L++ + L K+ + +A+++A++ +GL+++ILLRLSP++PF+A NY+ GVT V FK YA LPGT +VF+G +A L+ D ++ ++VG+V G VIA+ L S YAK+ LNK+LE+++ Sbjct: 56 LIVFIIVDSVTHG--FVKGAIEGLLQWIEENPIRGLFVFMAVYFVATVLFVPGSLLTLGSGFVFAESFGLGFGVLLATLAVFVGATLGALVAFILGRYLLRDWVENLTKKYNVFRAIDKALEEKGLRIMILLRLSPIIPFNALNYICGVTSVSFKHYAWANFAILPGTILFVFLGASAGSLV---DSGNGGDTPVVTIATIVVGVVFG---VIAIALTSRYAKKELNKILEQEK 281
BLAST of mRNA_P-lacustris_contig100.107.1 vs. uniprot
Match: W7TSR1_9STRA (SNARE associated Golgi protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSR1_9STRA) HSP 1 Score: 189 bits (481), Expect = 2.390e-51 Identity = 112/252 (44.44%), Postives = 165/252 (65.48%), Query Frame = 2 Query: 143 IVVYVVLDYTVPGLGFVAGVLKSFLEWVEENPGLGALAFALVYIFTTVCFIPGSLLTLGAGLVFGRALGTGWGVLVGTVSVMVGATIGAILAFLLGRFVLQEQAKGLFNKFKILKAVNRAIKV-QGLKLVILLRLSPVVPFSAFNYVMGVTDVFFKDYAIGCVGFLPGTTAYVFIGTTASGLLGDDDEQEXSESNSSGTVQLIVGIVGGIATVIAVVLISIYAKRALNKVLEEDRIAQ-EALEREGGLEGGV 892 +V+ + +DY+ G VA VL +FLEWV +P GA+AFA VY + V F+PG+ LTLG G +FG+ALG G G + +++V VGA+ GA+ AF LGR++L E A+ N++ IL+A++ ++ +GLK+V+LLRLSP+VPF+A NY+M VT V K Y +G VG +P AY F+GTTA GL + ES+ V++ + +VG +A V AV ++S +A+ L K+ +E A+ E + EGG EG V Sbjct: 61 VVILIAVDYSPAGHRHVARVLSTFLEWVGRHPLRGAMAFAAVYALSVVFFVPGAALTLGGGFLFGQALGVGPGTVFASLAVFVGASAGAVAAFSLGRWLLHETAQSTLNRYTILRALDASLHGHRGLKIVLLLRLSPLVPFTALNYMMSVTSVSLKTYTLGLVGMVPAVVAYSFLGTTAGGLT----REAGGESSVERGVKIAMYVVGAVALVAAVGVLSRFAREELRKIQDEGEGARGEGRDVEGGGEGEV 308
BLAST of mRNA_P-lacustris_contig100.107.1 vs. uniprot
Match: A0A7S1DCG4_CYCTE (Hypothetical protein n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DCG4_CYCTE) HSP 1 Score: 187 bits (476), Expect = 2.230e-50 Identity = 104/248 (41.94%), Postives = 158/248 (63.71%), Query Frame = 2 Query: 146 VVYVVLDYTVPGLGFVAGVLKSFLEWVEENPGLGALAFALVYIFTTVCFIPGSLLTLGAGLVFGRALGTGWGVLVGTVSVMVGATIGAILAFLLGRFVLQEQAKGLFNKFKILKAVNRAIKVQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFKDYAIGCVGFLPGTTAYVFIGTTASGLLGDDDEQEXSESNSSGTVQLIVGIVGGIATVIAVVLISIYAKRALNKVLEEDRIAQEALEREGGLEGG 889 +VYV++D G V ++ SFLEW+E+NP G AF +VY T+ F+PGS+LTLG+G VF A G G GVL+G++SV GA+ GAI++FLLGR++L+E KGL K+ I +A++ A++ +G +++ LLRLSP++PF+A NY+ GVT + Y + + LPGT YVF+G +A L + + S ++ TV +IV VG + A+ L S YAK+ LN+V++ + + G +E G Sbjct: 94 IVYVIVDSITTGN--VRSIIGSFLEWIEDNPIPGFFAFMIVYFVATILFVPGSILTLGSGFVFANAFGLGPGVLIGSLSVFFGASSGAIVSFLLGRYLLREWVKGLTKKYAIFEALDVALEEKGFRIMALLRLSPIIPFNAINYIGGVTALSLYAYTLALIAILPGTVLYVFLGASAGSLA------DSASSGNNATVTIIVVAVGCVFGFAAIFLTSYYAKKELNRVIDAREATNSSEDERGDVESG 333
BLAST of mRNA_P-lacustris_contig100.107.1 vs. uniprot
Match: A0A0G4EY60_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EY60_VITBC) HSP 1 Score: 186 bits (472), Expect = 5.320e-50 Identity = 113/244 (46.31%), Postives = 159/244 (65.16%), Query Frame = 2 Query: 143 IVVYVVLDYTVPGLGFVAGVLKSFLEWVEENPGLGALAFALVYIFTTVCFIPGSLLTLGAGLVFGRALGTGWGVLVGTVSVMVGATIGAILAFLLGRFVLQEQAKGLFNKFKILKAVNRAIKVQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFKDYAIGCVGFLPGTTAYVFIGTTASGLLGDDDEQEXSESNSSGTVQLIVGIVGGIATVIAVVLISIYAKRALNKVLEEDRIAQEALEREG 874 I+VY+++D T VA L F EWV++NP G LA+ VY+ TV FIPGS+LTLGAG F A G G G+ G +V+VGA +GA LAF GRF+ + +GL +KFK+++A+++ + QGLKL ILLRLSPVVPFSAFNY+MG T ++DYAIG +G +PGT YV+IG + G + + S V L VG+V AT IAV +++ +A++AL ++ E++ A EA + +G Sbjct: 65 IIVYIIIDSTTGQR--VAEGLDIFKEWVQDNPATGILAYMAVYMVCTVAFIPGSILTLGAGFTFVCAFGNGPGMAAGIGAVLVGAFVGAQLAFFCGRFLFKSWVQGLTDKFKVMRAIDKVFETQGLKLNILLRLSPVVPFSAFNYIMGGTRTRYRDYAIGTLGIIPGTALYVYIGAIPA-FAGACSGKAEGSGHWSQWVFLAVGLV---ATFIAVFIVTWFARKALREITEKE--AAEASKADG 300
BLAST of mRNA_P-lacustris_contig100.107.1 vs. uniprot
Match: A0A7S4W131_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W131_9STRA) HSP 1 Score: 184 bits (467), Expect = 1.950e-49 Identity = 101/246 (41.06%), Postives = 155/246 (63.01%), Query Frame = 2 Query: 146 VVYVVLDYTVPGLGFVAGVLKSFLEWVEENPGLGALAFALVYIFTTVCFIPGSLLTLGAGLVFGRALGTGWGVLVGTVSVMVGATIGAILAFLLGRFVLQEQAKGLFNKFKILKAVNRAIKVQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFKDYAIGCVGFLPGTTAYVFIGTTASGLLGDDDEQEXSESNSSGTVQLIVGIVGGIATVIAVVLISIYAKRALNKVLEEDRIAQEALEREGGLE 883 ++YV++D ++ FL+W+E+NP G AF VYI ++ FIPG +LTLGAG VF ALG G G+ + TV+V GA GA +FL+GR++L++ L K I +A++ A+K +GL+++ILLR+SP+VPF+ FNYV GVT + +DYAIG +G LPGT Y+ +G++A L+ + S S + TV++I ++G + V+ V + YAK+ LNK+L + R A EG ++ Sbjct: 40 IIYVIIDLATTKNTM--RIVADFLDWIEDNPAAGVFAFIGVYIIASIFFIPGLILTLGAGFVFANALGLGVGIFLATVAVFFGAFFGACASFLIGRYLLRDCVGKLTKKRVIFEAIDAALKDKGLRIMILLRVSPLVPFNVFNYVAGVTSISLRDYAIGMIGILPGTLLYILLGSSAGSLV------DSSSSGNDSTVRIISIVLGIVFAVLGVYATTYYAKKELNKILSQRREVNAAASTEGDVD 277 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig100.107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig100.107.1 >prot_P-lacustris_contig100.107.1 ID=prot_P-lacustris_contig100.107.1|Name=mRNA_P-lacustris_contig100.107.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=330bp MDNETESGTTALVNSVNDDSAMPPTKQQKIIKAGLLLLLLAIVVYVVLDYback to top mRNA from alignment at P-lacustris_contig100:138657..142076- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig100.107.1 ID=mRNA_P-lacustris_contig100.107.1|Name=mRNA_P-lacustris_contig100.107.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=3420bp|location=Sequence derived from alignment at P-lacustris_contig100:138657..142076- (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig100:138657..142076- >mRNA_P-lacustris_contig100.107.1 ID=mRNA_P-lacustris_contig100.107.1|Name=mRNA_P-lacustris_contig100.107.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1980bp|location=Sequence derived from alignment at P-lacustris_contig100:138657..142076- (Pleurocladia lacustris SAG_25_93)back to top |