mRNA_P-lacustris_contig10.80.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig10.80.1 vs. uniprot
Match: D8LHY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHY9_ECTSI) HSP 1 Score: 873 bits (2256), Expect = 1.090e-264 Identity = 822/2182 (37.67%), Postives = 1043/2182 (47.80%), Query Frame = 2
Query: 1853 ETGRAVPSRRASAGFFRPSSEIRNEGSIPDSIDYDKVEATLSLIELANRTAGPDAGRQMLQALEDLDKIHQRVSDEKKVAPAQEPQ-----RRDG---VAERASVYHVVQRSGGASCC---APDGSTASNEGEPVGEECAGLTEEREVFNVSSQGAAERPTTRAATGSDSLDVNGPHEGGPSSASTGNVPRSDGEEDCLGVELEGETSLTSSERLSRNFSLAVSSSSEDSAGSHASSAGIIQTIGKWLWSNKAATDSLESTKSSHAEYAAGGDSNGQGRVGASLLVQPRDSNAT*ANILRRTESRWRFRSRRRTPTTHHPEA**IAGVTSPDRVVKHQ*NP*ECWSWGSSTQGKGYQSDQGCRLEPLPEKRASSISSRPITETVTP--MQNRDTENGKDEGSRLDEKDARHSPAQRPAGRRARSSSEADKPVGLPQLAAEIAWAEDSLLGRGNGHRETPAGRPVSVDVQQPDHDENRTSSAPQVSLESVNNEELNASKVFRRSEANANKAIVASEKGNTG-PSKGAVQDEQPEGRQDNRREAAHRISPPPPASPSKVPTSGQ-IEAETPSEDQDHDGSRVIEPRANESGHKNEM-RHRVIVMEGGNTPVERKGVGCDATSIC--TSSAPFLHRESRISVSTRPWRRNNDAVSEETCSLTMDRNKDDPSTPMLSGERGDISTPATTEMANTGSGALSDSNGYMQVPPKACVEFVWPKPGRAVAPKRLRPPGASKENVTSAPSRGAPGIVRRSPLIDALHPEVARQRKFQKELRQTRRRDSAASCSANANKIADSAEVETATAANTKPRTQP---EPGTTYVGRTATDANGPPAERSPQALAGDAKRNPTKKHGDATTATAPVVLDASRGNPVAPKGRRRR-RSLWAEPVPLPMAXXXXXXXXXXXSPVRKPSRPSLVPNGFAAAFGEGTIISGDVDSVTNAVSGAGSLSDFQRECVAEWVAQARRSLGPKVWTCIGLSNAFHRARDRINRSIVVPRGGTCQTADPGGR-------PGWSITPVAEALSSGRATSNGGRGKKNDGGKENASQNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXASR*LGPVLV*ESSPGHRHRDLDNRNGAGTKSNLCGHR*SSQQQ*SQQQRHKPMGRRRQRNGSMADGSQEGEGVLSPCRD*SVGRFRTGGGVGTSNLD----------ASSTKVRQELLPHRRGFCLGCGRRSCLQAVGRD*TLDGARSAALTRGHHRD---SPGEREEGAVRCTTTPK--------VKPGTAHGTRPSVLQKLCEAVGCSDPARYGDIHPPAHARLCRKHRLDGMVDVGSRRCARPNCGRLAAGAGGSTPATAVSLCSLHALEGRVDVEGLAFVLLALSQARYTRTSRRPTTITGGTIVGEGCRALSARDGELAAAES-ATLHASAVRNVLLAITKQPLMLDAPTVGQEHLAEAAKQGHSAYGLPNN---IVRPSNEGELLDRRVSTPMNFVNTPGSGGSPAAACTSTSVSGSRXXXXXXXPPRRGSRRASCSGNKYEDEGGHAACFSV-----GGRRQSHLPRDGASSEDGGESCAQKGGGERLKRR-HHAIEASEKAGGVGKHGQHGRVVHLVQNQEYQRDQGSTGFSTEYSGGSDGGHRCGDDDQHSAVGAKQSRRSPGSTGAGDVPVALAQSLDTAVGSGAHDGL-RRGGIDEVLELNATSLKSIFGTFSRQPAGCRSGTAR-MKLPDILRFCDSFELRPGLVSTKEIVDSYKEVAFPGVRGLKDDDIGFSDAGGKSEVGQSERLPHRG------------SAAAQQTVRHCKPSSASDSCRADCAGDFSMSDEKGSSEPFAMADATALDATKRGDSALDDSLTSRDATLQGLAKDTGVAVA--ASGISPEEGR-KTTKTVREGESRRGSRCSRGTIHGESDEKGEVSRRGKTQQEDNECSLYIRSRSGLEATEGYRMQSPSRRMSPSGGGVRGG-----RGRRPVYLGRTQAFSLRRVESNLAVDARGFGLSGVCPDKALAGDVRASEHTAQESSSSRSGKSTRRTSDVNERGGKILTDCAGDAAGEPLAPETSGLTEAQFFQWLKLVAAKSKALPAKRTFGRSLTPPNSRPGSSIGRGKVESDDAVPRRGGRREKDRTNRQNTARAVVLMQWMEVSRGMRTREKRRIPPFKLSSCL----PLPSG 8140
+ R RRASAG FRPS + R S PD+IDYD VEATLSLIELA R AGPDAG+QMLQALEDLDKIHQRVSDEK P + + + DG + + + V +GG+ AP STA EG PVG E + + + QGA RA T + L+ NG + G A G+V + E L E T +S R FSLA SS +ED+ G D + + AE+ + + G + LL + ++ T S EA I V P +T+ G + + EP PE+ ++ R ET P +Q+ E+ + EGS +DE++AR +Q PA RRAR SSE DKP GLP LAAE+A E+S+ R N + PA SS PQVS ++N E A +NKA VA E+ N G S G V + +P R + E A SPP + K PT Q I TP+ED D + EPRA G K+ + +HR G+ VE G +A + S+ +HR+S +SV TRP R N+A ++ R P+T + +G G +T ATT+ GS A+ A+K++ S APGIVRRSPLIDALHPEVARQR+FQ + R R+RD+A S K A+VE T A+ P +A G+AK TKK DATTA VV S A + RRRR RSLWAE P A SP + SR +LVP AAF EG I +VDS T+ S AG L+ Q E V EW+A+A RSLGPKVWTC+G AF R RI RSI+V GGT T D PG S+ P GG G+ +E + P R G V + S DL R T++ + +++++ R NG+ A + EG + + G+ GG G +D A++T++R L RR F + + D L R + R D SP AV C K V G A + QK+CEAVGCSDPARYGDI P A ARLCRKHR +GMVDVGSRRC RP+CGRLA GA T A A SLC+LHA RVDVEG+AFVLL LS+AR+TR + + GE +A SAR+ ELAAA + A L+ASAVRNVLLA+T+QPL +PTVG+E L A +Q A+G N +V P ELL+RR++TP + V+ P +A ++ + R +RGS V GR+QSH P + GG+ C +K GE + HHA AS++ H Q + L + D GS G GGS HR GD+DQH +QSR GS G G++P LAQ+LD AV G G RR G+ EVLE NA SL +++ F+RQ GC GT M L D++RFCDSFELRPGLVST+EI+D+YK +AFPGV GL D+DIG+S+ GG S +++ P +G SA+ + R KPSSAS AD AG + D KG E D LDA + SA + R TLQ LA A + A ++ G K +EG TQQ+D+ECSLY RS SG E GYRM SPSRR RG+R VYLGRTQAF LRRVESNLAVDARGFGLSGVCP++A+AGD + Q+ +S T RTSD+ E GG I + AG A GEP PE SGLTEAQFFQW+K VA + KAL K+ FG SLT P S+ G RGK ES DA+P +++ + RQ A AVVL+QWMEVSRGMR + IPPFKLSSCL PLPSG
Sbjct: 694 DRARNTSPRRASAGVFRPSPKARKRDSTPDAIDYDTVEATLSLIELATRAAGPDAGKQMLQALEDLDKIHQRVSDEK--GPTENERWILDGKADGETLLGAESGLNAKVGDAGGSDATRPRAPGDSTAKKEGVPVGGENSRTNKASGGLSGGDQGAHAGGAVRAETEVNVLNSNGHNPGRKPDA--GDVQSNTDGESLLAGTKESATLAATSPEPGRKFSLA-SSDAEDANG-----------------------DDTKGQEDGRAEFPSSFE--GSDTDASDLLGKIPGEKVDSSDNHDETTPSEPMASCGGASVRQGGEATVIVTVPEP------------------ATELSGESASRRDSREPPPERSVGVVNDRQGDETEMPNGVQHEAEEDDEVEGSGVDEREARDGQSQTPARRRARRSSEGDKPTGLPHLAAEMARVEESVSAREN-YEGDPA------------------SSVPQVSPVPISNGEFKAG-------TTSNKAAVADEEINAGGASHGTVGEGRPGERHGSEGEKACGNSPPTRVAQPKTPTPPQTISQTTPAEDPWRDEPQTTEPRAEGEGSKDGLLQHRGSTTVSGSAQVESGGGRGEAPGASGNSPSSVLMHRDSWVSVGTRPRRGRNNAAPGQSPPCVEGRTDAPPTTKVSAGRVG-FATQATTKEVGAGSDAI-----------------------------------ANKKDTNSG---RAPGIVRRSPLIDALHPEVARQREFQGKRRHARQRDAAVPAS---EKTIHPADVEAGTTASAIAAAGPGXXXXXXXXXXXXXXXXXXXXXXXXXRAATGNAKS--TKKPRDATTAA--VVAGNSTDTAGASRSRRRRPRSLWAETAHEPAAPLPVSSFRTPPSPAGETSRLTLVPAASGAAFSEGASIPRNVDSPTDDASRAGRLTPKQSERVEEWLARAERSLGPKVWTCLGSGRAFRRTCGRIIRSIIVRGGGTGHTEDRRDLTENRERPPGGSVKPAP-----------GGPGRSRMMAREGRKEAPHKQARKGRAIDRDREEEND---------GGREGGGARVDDRS---WDEDLSERTALVTEAVIW--TIATERERKTACAAIAEARNDNENGNDARERWDEEGKRTDRHPTAWGKG--GGSPGRHTMDIVHDSSAATSAATTELRISLSTARR-FIKRSRLTDGVHVIDADVDLAFKRWEEVERLAGLDQQCSP----TAAVACGEEDKSGRVVSREVGSGLADAVAVPIPQKVCEAVGCSDPARYGDIGPKAKARLCRKHRHNGMVDVGSRRCDRPDCGRLAVGA--HTTAKATSLCTLHARSDRVDVEGMAFVLLMLSKARHTRRRGKAAKTASAAVGGEN-QAQSARNEELAAAANLAALNASAVRNVLLAMTEQPLAPCSPTVGRELLPAAVRQSSEAFGPGTNTGGLVAPD---ELLNRRIATPTDSVSKRAL---PRSAAVASGLDARRKSQH-----QRGSXXXXXXXXXXXXXXXXXXEKDVVEPVSRGRKQSHAPTSEEGTGGGGDPCGRKRSGEGPRSSGHHATGASDEVAAGDGH-QDETELPLDYRAAQRPDLGSAGSP----GGSGIDHRGGDEDQHQVEWVQQSR---GSAGHGEMPGELAQTLDVAVDFGGRGGGGRRSGVHEVLEKNAPSLHAMYSKFARQSTGCERGTVTTMTLCDVIRFCDSFELRPGLVSTREILDAYKTIAFPGVLGLSDEDIGYSNVGGVSNASDTKK-PRKGRKDRRLSASCRASASPEDATRQRKPSSASTFGHADQAGIPASGDSKGVKERVTAEDTETLDAELQSGSAPTEEGKLRALTLQDLATGRPDATSREAEHVAARRGSDKAANAAQEGRGTXXXXXXXXXXXXXXXXXXXXXXXXTTQQDDDECSLYFRSDSGAE---GYRMPSPSRRTXXXXXXXXXXXXXXXRGKRTVYLGRTQAFPLRRVESNLAVDARGFGLSGVCPERAMAGDGSQQQARVQKPPTSSLDGFTERTSDMKEEGGNIFSGSAGGADGEPSVPEASGLTEAQFFQWVKFVAVECKALVTKKAFGNSLTRPRSKSGRGTCRGKAESVDAMP---ANEKENGSRRQGIASAVVLLQWMEVSRGMRAGKGEGIPPFKLSSCLANTMPLPSG 2694
BLAST of mRNA_P-lacustris_contig10.80.1 vs. uniprot
Match: A0A6H5L713_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L713_9PHAE) HSP 1 Score: 598 bits (1541), Expect = 3.550e-171 Identity = 626/1763 (35.51%), Postives = 810/1763 (45.94%), Query Frame = 2
Query: 1853 ETGRAVPSRRASAGFFRPSSEIRNEGSIPDSIDYDKVEATLSLIELANRTAGPDAGRQMLQALEDLDKIHQRVSDEKKVAPAQ-EPQRRDGVAERASVYHVVQ----------RSGGASCCAPDGSTASNEGEPVGEECAGLTEEREVFNVSSQGAAERPTTRAATGSDSLDVNGPHEGGPSSASTGNVPRSDGEEDCLGVELEGETSLTSSERLSRNFSLAVSSSSEDSAGSHASSAGIIQTIGKWLWSNKAATDSLESTKSSHAEYAAGGDSNGQ--GRVGASLLVQPRDSNAT*ANILRRTESRWRFRSRRRTPTT--------------HHPEA**IAGVTSPDRVVKHQ*NP*ECWSWGSSTQGKGYQSDQGCRLEPLPEKRASSISSRPITETVTP--MQNRDTENGKDEGSRLDEKDARHSPAQRPAGRRARSSSEADKPVGLPQLAAEIAWAEDSLLGRGNGHRETPAGRPVSVDVQQPDHDENRTSSAPQVSLESVNNEELNASKVFRRSEANANKAIVASEKGNTGP-SKGAVQDEQPEGRQDNRREAAHRISPPPPASPSKVPTSGQ-IEAETPSEDQDHDGSRVIEPRANESGHKNEM-RHRVIVMEGGNTPVERKGVGCDATSIC--TSSAPFLHRESRISVSTRPWRRNNDAVSEETCSLTMDRNKDDPSTPMLSGERGDISTPATTEMANTGSGALSDSNGYMQVPPKACVEFVWPKPGRAVAPKRLRPPGASKENVTSAPSRGAPGIVRRSPLIDALHPEVARQRKFQKELRQTRRRDSAASCSANANKIADSAEVETATAANTKPRTQPEPGTTYVGRTATDANGPPA---ERSPQALAGDAKRNPTKKHGDATTATAPVVLDASRGNPVAPKGRRRR-RSLWAEPVPLPMAXXXXXXXXXXXSPVRKPSRPSLVPNGFAAAFGEGTIISGDVDSVTNAVSGAGSLSDFQRECVAEWVAQARRSLGPKVWTCIGLSNAFHRARDRINRSIVVPRGGTCQTADPGGR-------PGWSITPVAEALSSGRATSNGGR--GKKNDGGKENASQNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXASR*LGPVLV*ESSPGHR----------HRDLDNRNGAGTKSNLCGHR*SSQQQ*SQQQRHKPMGRRRQRNGSMADGSQEGEGVLSPCRD*SVGRFRTGGGVGTSNLDASSTKVRQELLPHRRGFCLGCGRRSCLQAVGRD*TLDGARSAALTRGHHRD---SPGER----EEGAVRCTTTPKVKPGTAHGTRPSVLQKLCEAVGCSDPARYGDIHPPAHARLCRKHRLDGMVDVGSRRCARPNCGRLAAGAGGSTPATAVSLCSLHALEGRVDVEGLAFVLLALSQARYTRTSRRPTTITGGTIVGEGCRALSARDGELAAAESATLHASAVRNVLLAITKQPLMLDAPTVGQEHLAEAAKQGHSAYGLPNNIVRPSNEGELLDRRVSTPMNFVNTPGSGGSPAAACTSTSVSGSRXXXXXXXPPRRGSRRASCSGNKYEDEGGH--------------------AACF------------------------------SVG----------------GRRQSHLPRDGASSEDGGESCAQKGGGERLKRR-HHAIEASEK-AGGVGKHGQHGRVVHLVQNQEYQR--DQGSTGFSTEYSGGSDGGHRCGDDDQHSAVGAKQSRRSPGSTGAGDVPVALAQSLDTAVGSGAHDGL-RRGGIDEV 6736
+ R RRASAG FRPS + R S +SIDYD VEATLSLIELA R AGPDAG+QMLQALEDLDKIHQRVS+EK P + E DG A+ ++ RS AP TA E PVG E + T+ + QG + RA T ++L+ N + GG A G+V + E L E E + +S R FSLAVSSSSE+S GS ASS GI+Q+IG WLWSN + S ++++SS AE A G DS GQ GR + D++A+ ++L ++ S + TT H EA VT P+ + + + Y+ D CR EP PE+ ++ R E P +Q+ E + EGS +DE++AR +Q PA RRAR SSE DKP GLP LAAE+A E+S+ R N +D + SS QVS E +++ E A NKA +A E+ N G S V + +P R + E A SPP +P K PT Q + TP+ED D ++ +PRA G K+E+ +HR +GG+ VE G +AT + S+ +HR+S +SV TRP R N+A ++ ++ D P T +S R +++ T+ GS A+++ G APGIVRRSPLIDALHPEVARQR+FQ + RQ RRRD++ S KI A+VET T A+T P TT R A DA P + +A G+AK TKK D TA V+ S A + RRRR RSLWAE P A SP + SR +LVP AA EG IS +VD+ + S AG L+ Q + V EW+A+A RSLGPKVWTC+G AF R RI RSI+V G D G PG S+ P A R T+ GGR G K+ A XXXXXXXXXXXXX + V+ ++ R H + +N N A + + G+ G RQ + G G + D S A++T++R L RR F + + D L R + R D SP EE + +V G A + QK+CEAVGCSDPARYGDI P A ARLCRKHR GMVDVGSRRC RP+CGRLA GA + T SLC+ HA RV VEG+AFVLL LS+AR+TR + + GE +L+ + AAA + L+ASAVRNVLLA+T+QPL APTVG+E L A +QG YG N P ELL R++TPMN V+ S S A A + GS+ R SR A+ + + DE G AA S+G GR+QSH P + GG+ C + GE L+ HHA AS++ A G G + L N R + GS GF GGS HR GD+DQH A G +QSR GS G G +P +AQ+LD V G G RR G+ EV
Sbjct: 692 DRARNTSPRRASAGVFRPSPKARKRDSTLESIDYDTVEATLSLIELATRAAGPDAGKQMLQALEDLDKIHQRVSEEK--GPTENERWILDGKADGETLLGAESGLNAEIGDAGRSDATRPRAPGDPTAKKEDVPVGGERSRTTKASGDLSGRDQGTHAGGSVRAETEVNALNSNDHNRGGNPDA--GDVQSNTDGESLLDGTKESEMLVATSPERGRKFSLAVSSSSEESTGSQASSVGILQSIGNWLWSNTPPSRSRQNSQSSDAEDAIGDDSKGQEEGRAEFPSSFEMSDTDAS--DLLEKSPGEMVDSSEKHDDTTPSEPLASGGGASVRHSGEA--TESVTVPEPATE-------------LSVDRAYRQD--CR-EPPPERSVGFVNDRQDDEKEMPNGVQHGHQEKDEVEGSGMDEREARDGRSQAPARRRARRSSEGDKPTGLPHLAAEMARVEESVSAREN-------------------YDGDPASSVLQVSPEPISHGEFKAG-------TTPNKAALADEEINAGTASHETVGEGRPRERHGSEGEKACGSSPPACVAPPKTPTPSQTVPQTTPAEDPWRDDPQITKPRAEGEGSKDELLQHRDSTTDGGSAQVESGGGRGEATGASGNSPSSVLMHRDSWVSVGTRPRRDRNNAAPGQSPPC-VEGCTDAPPTTKVSAGRVGVTSQGITKEVGAGSDAIANEKGR------------------------------------------APGIVRRSPLIDALHPEVARQREFQGKRRQARRRDASLPAS---EKIVHPADVETGTTASTIAAAGPSASTTDAERRAADARTSPIGAPNAAARAAIGNAKS--TKKPRDGITAA--VIASNSTDTTGASQSRRRRPRSLWAEKAHEPAAPLPVSSFRTPPSPAGETSRLTLVPAASGAALSEGASISRNVDNADDDASRAGRLTPEQSDRVEEWLARAERSLGPKVWTCLGSGRAFRRTCGRIIRSIIVRGGCIGHAGDRRGGMENCECPPGGSVEPAPGAPGRSRRTARGGRKEGPHKQARKDRAIDRXXXXXXXXXXXXXXARVDGRGWDEDLSERTALVTEAVIWTIATEREREAACAAIVEAHNENENGNDARERWDEEGN-----------------GTDRQATAWVKGGGSPGPQTIDIVHDSSAA------------TSAATTELRISLSTARR-FIKRSRLTDGIHVIDADVDLAFKRWEDVERLAGLDQQCSPTAAAACGEEDTSGRVVSREVGSGLADAAAVPIPQKVCEAVGCSDPARYGDIGPKAMARLCRKHRYSGMVDVGSRRCERPDCGRLAVGANATAKTT--SLCTRHARSDRVGVEGMAFVLLILSKARHTRRRGNAAKTSSAAVGGENQASLARNEVVAAAANLSALNASAVRNVLLAMTEQPLAPCAPTVGRELLPAAVRQGSETYGPGTNTGGPVTPAELLHCRIATPMNSVSKRTSPRSAAVASALDARRGSQHQ-------RHRSRGATSNSSGASDERGDWGPILTPDGFRTTVPTRRPSAAXXXXXXXXXXXXXXXXXXXXXXXSPSVAPLSRSIGSGAQLEENSVVEPVSRGRKQSHAPMGEEGTGGGGDPCRRTRSGEGLRSSGHHATGASDEVAAGDGYQDE----TELPLNCRVARRPEMGSAGFP----GGSGIDHRGGDEDQHRAEGVQQSR---GSAGHGAMPGEMAQTLDVEVDFGGRGGGGRRSGVHEV 2304 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig10.80.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig10.80.1 >prot_P-lacustris_contig10.80.1 ID=prot_P-lacustris_contig10.80.1|Name=mRNA_P-lacustris_contig10.80.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=833bp MVDVGSRRCARPNCGRLAAGAGGSTPATAVSLCSLHALEGRVDVEGLAFVback to top mRNA from alignment at P-lacustris_contig10:152891..167107- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig10.80.1 ID=mRNA_P-lacustris_contig10.80.1|Name=mRNA_P-lacustris_contig10.80.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=14217bp|location=Sequence derived from alignment at P-lacustris_contig10:152891..167107- (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig10:152891..167107- >mRNA_P-lacustris_contig10.80.1 ID=mRNA_P-lacustris_contig10.80.1|Name=mRNA_P-lacustris_contig10.80.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=4998bp|location=Sequence derived from alignment at P-lacustris_contig10:152891..167107- (Pleurocladia lacustris SAG_25_93)back to top |