mRNA_P-lacustris_contig10.78.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig10.78.1
Unique NamemRNA_P-lacustris_contig10.78.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig10.78.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig10contigP-lacustris_contig10:132608..137489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-18_001080.1
Exons5
Model size477
Cds size477
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig10.78.1prot_P-lacustris_contig10.78.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig10 132608..137489 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815257.2074504-CDS-P-lacustris_contig10:132607..1327481622815257.2074504-CDS-P-lacustris_contig10:132607..132748Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig10 132608..132748 -
1693493434.5897436-CDS-P-lacustris_contig10:132607..1327481693493434.5897436-CDS-P-lacustris_contig10:132607..132748Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig10 132608..132748 -
1622815257.2202249-CDS-P-lacustris_contig10:134364..1344491622815257.2202249-CDS-P-lacustris_contig10:134364..134449Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig10 134365..134449 -
1693493434.60466-CDS-P-lacustris_contig10:134364..1344491693493434.60466-CDS-P-lacustris_contig10:134364..134449Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig10 134365..134449 -
1622815257.2340062-CDS-P-lacustris_contig10:135717..1358221622815257.2340062-CDS-P-lacustris_contig10:135717..135822Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig10 135718..135822 -
1693493434.6245344-CDS-P-lacustris_contig10:135717..1358221693493434.6245344-CDS-P-lacustris_contig10:135717..135822Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig10 135718..135822 -
1622815257.2475133-CDS-P-lacustris_contig10:136730..1368351622815257.2475133-CDS-P-lacustris_contig10:136730..136835Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig10 136731..136835 -
1693493434.6542482-CDS-P-lacustris_contig10:136730..1368351693493434.6542482-CDS-P-lacustris_contig10:136730..136835Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig10 136731..136835 -
1622815257.2613652-CDS-P-lacustris_contig10:137448..1374891622815257.2613652-CDS-P-lacustris_contig10:137448..137489Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig10 137449..137489 -
1693493434.6775923-CDS-P-lacustris_contig10:137448..1374891693493434.6775923-CDS-P-lacustris_contig10:137448..137489Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig10 137449..137489 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig10.78.1

>prot_P-lacustris_contig10.78.1 ID=prot_P-lacustris_contig10.78.1|Name=mRNA_P-lacustris_contig10.78.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=159bp
MHLMGMINDEILTRCIILAERIEGCVAADGSGRGSLSPEQIGAIFMVNRH
PNQHEDAAAKEAKAELQAWAKGRGLILTVPVNLRGATSKAASYHLHQMTN
TLKDQKEEKAREVPYFDFMSSVKGGILSDICVPEGQRLTLGRTHPMSIPK
ASHRDRHV*
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mRNA from alignment at P-lacustris_contig10:132608..137489-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig10.78.1 ID=mRNA_P-lacustris_contig10.78.1|Name=mRNA_P-lacustris_contig10.78.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4882bp|location=Sequence derived from alignment at P-lacustris_contig10:132608..137489- (Pleurocladia lacustris SAG_25_93)
ATGCATCTCATGGGAATGATCAACGACGAAATTCTCACGAGGTGCTCTCT
TAATGCGCAAGAAGTAATGCCTTACCGTACACCACCACGCACTTCATTAT
ATATATATATATATATATATATATATATATATATATATAATATGTTGCTC
AATGCACGCGCCGGCTAAACGGTAGTTGTATGTGCGACAGCCTGGGGCCC
ACCAATTGCAATTGTCGCAACCAGTTGATGCAAGGCAGGTGTAAGCAGGC
GGTGGATCGAAAATTCCAGCTGCTATGTAACACTAACACTTGTGTCTCGA
AAATACCTTCAATTGGAGCGCGGGGTTCGAAGCAACTCGTTTGCAGCAGC
GAGTTGCCTCACTATTGTTTACCGGCACCGGGTTAGCGTTACCGTTAGGA
TTGTGGCTAGTCAGCGTTTGGGTTGGGGCAGGGAAAGGGTTGGGCGTTTC
TCTATTTTCAAGCGCACGCATATATTTATGTGTGCCGTGTCCTGGTGCGA
CTATTCTTGCCTCATCACGAGGCATGACCCCCGATATTCAAGAACAATAA
CGCCTCCGGACAATCCGACGGTTTCAATAATCAACGATTTGTCCTACCTA
CTTCGTCTCTGAACAAACCTGCCCGTTCGGCAAAACTACACTGCACCTCC
GAAGATGTATCATCCTTGCGGAGCGCATCGAAGGCTGTGTTGCCGCGGAT
GGAAGCGGTCGTGGCTCCCTCTCCCCTGAACAAATCGGGGCGATCTTCAT
GGTAAACAGGTGACACGGATTCATTAGTCTTTGCGGAGGTCAGTGTGTGC
AGCTGAGTGGTATGTTAATGTGTCGCACGCGCCATGTCCGGTCCCTATCA
GACGGTACACAATTTTTTGCACAACTCCACCTTGACTGCTTTTGTTTGGT
CCAAGCGAACGCTGGAGAGCGATCGCTTTCCTTTTGGATTGCTACGTGAG
GTTAACTTTGGTTAACCTTAACCTTGCTCAATGATTTCATCACTTCCACA
TCGGTGGGGTGGGGTGAATTTGAAGGTGTGCCCGCACCTCACACAAAACT
CTGCTTCAATTCCTCTCTCTTTTTTGTCATTTCTTTTTTTGCTTTTTTCC
GGGAGTACCACGGCCGATTTGAGGGGGGTAGAAAGCCTCAGTGGTCTAGC
GGTTACCCTGTTGAACCTACTAGCGGCAAGTCTGGAGTTCGATTCCCTCT
GTGGGTGATCTTTTCTACCAAATTTGCAGTAGAAGGCGAATAATTCGTGA
GTAAAAAAATTCGATTAATTTCGACGAGGGAAAGGGACAGCTGAACCCTT
CTCGCGATAAAAAATTAAGGCATGTACCGCAGGAGGACGAGCGGGGGCCT
CAGGGAGAGGGAACCTCTTGTGTGACCCCGGCTAGGTGCCACCCTCCACA
TCACCGAGGTGTAGAGGAGGCTAGCACCCAGAATAAATGAGAGGTAAAAA
AAAAAAAAACACTACCGGATCCGAAGCAAAAAAGTGCAGGCAGCAATGGC
CAACAAGACCCCGTCTAGACAGCGAGCGGAGGCTCCGAGCGAATGCGTTG
AAACCGGCCGTACTGAAAGCGCCCTCGCGTGCAAAAATCTCAGAATATCC
AAGGTGTGCCGACCGCCTGTGTTCAGCCCACCTAAAGTGTTATCTCCTTG
CTGTTCTTCGCTCGCAGGCATCCGAACCAGCACGAGGACGCAGCGGCGAA
AGAAGCCAAAGCAGAGTTGCAAGCTTGGGCAAAGGGAAGAGGCTTGATCC
TAACCGTGCCCGTGAACCTACGGTGGGTATGGAAGGATATATAATTGGCA
TGATCGTGATGTGATCTCTAGCCCCGAAATAGGGAATAATTGCAAGCAGC
GGGTGACTCGATGTTTTGAGCGATCTGGGACGTCCTGTAGATTTTACTTT
GTTTCCCCATGCGCGGTTTCTTGCATCACGCGCCGTTTTTTCTGCGCAAC
ACCTTGTACGGCTTGGCTTGCTTATTCCTTATGCCATGGACGTTGAAGCA
TCATGCGACTGGCGGAATATTGTCGGTGTAACCTCGGGAGTTTTTAACGG
GACATTCGCCTCAATCACCCGACGCTGATGCATACATAGATAGCAGATGC
AGAGCCGTATAAGTATTATATCAAGGTGTTACAGTAGTAAGCCGGCCAGA
CCGCAGTCCTCCGGGCTTACAATATACAATAGTCAACGTTCCGAAGATCG
GAAGCCCTCCCCTCCCGTCTCATCCTATACCACGCACTGCACCCTGGCAC
GGTGCACATATACCACGACGTGGCGTATGCTCATTTTTTCTGGCAGCCTA
GGCCTATGGCTATGGCTGCGGAAATCCGTTCCCAACGGCCTCGGAGTGCC
GAGTGAGACGATACTGGATACAGATGAAGGGCTTCGGTTCAATAACATAA
GCAGCAGCAAGAGCGCAAAAATCTGACAAATACATAGGGTTTTTTACATT
TGTTGCACATTGTCGACGAGGTTGCTCCCTTGTCTGCCTGTGAGGTAACC
TTATCGATATCGCGACATCGTCTGTCCTGCTCATAGAAAATTCCGATCGT
AGCTGAACAGTAGCCGAGACCGAGCCAGACACGACGGCACCATCAGGCAG
GCAACAGAAACATGCGCCAACATCGACACAGCTAGCTCTATGATACTCTA
AGATACACTATGATGCGGACGGCAACAAACAAGGCGGACCGATTTCTCGC
CAGGACCAGAACCAAAAACAATCTGAACCGTATCTACGTGGGTCAAAATT
GGAGAGGGTAACCTTAACCCCGGGATGTTGGGCGGTCAGGAACTTGCAGC
CTGGAAGATAATTATTCTCCTTTCCCTTGGCGTTCTGTTTTCCGTAGGGC
CGGTGTTGGCTCTTGTACCAAGTACTCCGTATTGGGCTATGGGGAATGCC
TTGATTCGTCGCCCGACGAAATAGCAACAGCAACAGCAACGCCGACATTA
CCACTACCAACAACAACAACAACATCGACACGACCAAACCTGAAAGTACT
AGTGCTACGAAAATCGCCAAACTCCGCAATCCATCATCAGGGGAGCCACC
AGCAAAGCAGCATCCTACCACCTTCATCAAATGACTAATACCTTGAAGGA
CCAAAAGGAGGAGAAGGCGCGCGAGGTGCGGATGAAGAAGCCATCCATGT
TGTCTAGTGCGTCACTAAAATTTCCTCTGCGAAGGTCGTAGTTTGTGGTG
TTGAAAATATTACGGAGTTCCTGTCAGCGTTGCATCCTGTCCCTGTGTTT
TGTTCACATGCCGCGTTTTCGTTTTTTTTACTGAACAACCAACCATTTGC
GGGAGAACTATTGAAATACTGAACACGCGATTATCCGCCCTTTCTTCGAT
TACCCCGTGTCGCGGGTCGATTTTTGTTGTCTTGTCACTTTGCAACTCCC
TGGCATCTCTAGTCTATGATGTCCCGAGCCTTCTTTCATTTGGGAGCATT
TTGGACAGATGTCTATCGGCTTTGGGTGAGTACTTGTACCCCAACCAATT
GGACGAAGCGCTTCGGTGCTGCGGCATGCGGACAATGGTGGCGCAAAGCA
CGGAGTAGCTATATATAACCCAAAAGCGTTTTTTGAGCATGCTTTTTGTA
CGAGCCGCGCTCGTCAGGACAAAAACTACTACTGTACGTAGATATACATC
CGCTTCCCACGGAGAATCACGTAGGTACCACGTTAATTGCACCGAGCTGG
CTACACCATTCTACAATCCCCCCACAGGCCAACTTGTTGTAAACTCAATT
GACGTCCGAGGCGCAAGATGAATAAATGCGACTGACTGTGGTTGGTTATC
TACAGGAGATGAATTAATTGTTAATCGCAATTTAACCCGCGATAGCGGCT
GTGGTTGGTTGTTTACAGGAGGAGATGAATTGCCCATTGCAATTGCTCGG
GTTATGCACAGGGGAAAAAAGGCACGACTAGAACCCGATGCACAAACGAT
CTATCTATCTATCTATCTATATTGTTTGACGCCCTCTTCCGCAGTAACCT
GCCATGCAGGTCGTGGAAGCTGCGCTGTATTGGTCGTCTAGAAGAAGAGC
AGAAGAATTAATTGAACATGGAGGTTTATCGCGAGTTATTTGACATCATC
AAATAAATGTTTTGACCCACGTGTGCCTGACCCAGTATTCATTGAGGATG
ACAACTTGTTGTAACTCATGACGTCCGAGGCCACGGTCTTGAAAGCGGTC
TTGAAAGCGGGCACACAAGTGAATCTAATGTTGTTTGGTCGGCAGCCTCA
TTTTCGTTCACGACGCAAAGCAGACTTGCGAGATCCGAATGATGAGTTGG
CACATGCTCGAGCAGAAAGAAGCTACAGCAGAAGAATTCAACATGGAATT
ACGAATTGAATTGAGCGTGCGCCAATTGGCCAACTGATTGATTATGTTCG
GATTCCGCGGGCGACTAGGTCACCACCACCACCACGCCGTCGTTGGTATT
GTAGCATAAGCACAAAATAATGAGTAGAGGTTGCATTTGCTCCGAGTGCG
GCCGCTATAAAACAACGGCTAGAGAGAGACGAGGACACGTGATGTGCGGG
AAAACATCAGATAGTGTCGTATGCGCTATCCTGTCGCATCAGTTTAGCGA
TAATCCTACACCTCCCTGTACACTACACACTTGGGGCCGAAACCTGTCAC
TTCAGATTCAAAGGAAATTTTTCTGGCCGAAAATCATCTCGCTCTCCTCC
CGTCACCAACACCGATACTAGTCCGTACGCCGTCAACGCAGGTGCCCTAC
TTCGACTTCATGAGCTCCGTGAAGGGGGGAATCCTGTCGGACATATGCGT
TCCTGAAGGCCAGAGATTGACTTTGGGTCGAACGCATCCCATGTCTATTC
CCAAGGCATCTCACCGAGATAGACACGTCTGA
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Coding sequence (CDS) from alignment at P-lacustris_contig10:132608..137489-

>mRNA_P-lacustris_contig10.78.1 ID=mRNA_P-lacustris_contig10.78.1|Name=mRNA_P-lacustris_contig10.78.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=954bp|location=Sequence derived from alignment at P-lacustris_contig10:132608..137489- (Pleurocladia lacustris SAG_25_93)
ATGCATCTCATGGGAATGATCAACGACGAAATTCTCACGAGATGCATCTC
ATGGGAATGATCAACGACGAAATTCTCACGAGATGTATCATCCTTGCGGA
GCGCATCGAAGGCTGTGTTGCCGCGGATGGAAGCGGTCGTGGCTCCCTCT
CCCCTGAACAAATCGGGGCGATCTTCATGGTAAACAGATGTATCATCCTT
GCGGAGCGCATCGAAGGCTGTGTTGCCGCGGATGGAAGCGGTCGTGGCTC
CCTCTCCCCTGAACAAATCGGGGCGATCTTCATGGTAAACAGGCATCCGA
ACCAGCACGAGGACGCAGCGGCGAAAGAAGCCAAAGCAGAGTTGCAAGCT
TGGGCAAAGGGAAGAGGCTTGATCCTAACCGTGCCCGTGAACCTACGGCA
TCCGAACCAGCACGAGGACGCAGCGGCGAAAGAAGCCAAAGCAGAGTTGC
AAGCTTGGGCAAAGGGAAGAGGCTTGATCCTAACCGTGCCCGTGAACCTA
CGGGGAGCCACCAGCAAAGCAGCATCCTACCACCTTCATCAAATGACTAA
TACCTTGAAGGACCAAAAGGAGGAGAAGGCGCGCGAGGGGAGCCACCAGC
AAAGCAGCATCCTACCACCTTCATCAAATGACTAATACCTTGAAGGACCA
AAAGGAGGAGAAGGCGCGCGAGGTGCCCTACTTCGACTTCATGAGCTCCG
TGAAGGGGGGAATCCTGTCGGACATATGCGTTCCTGAAGGCCAGAGATTG
ACTTTGGGTCGAACGCATCCCATGTCTATTCCCAAGGCATCTCACCGAGA
TAGACACGTCTGAGTGCCCTACTTCGACTTCATGAGCTCCGTGAAGGGGG
GAATCCTGTCGGACATATGCGTTCCTGAAGGCCAGAGATTGACTTTGGGT
CGAACGCATCCCATGTCTATTCCCAAGGCATCTCACCGAGATAGACACGT
CTGA
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