mRNA_P-lacustris_contig10.72.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig10.72.1
Unique NamemRNA_P-lacustris_contig10.72.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig10.72.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig10contigP-lacustris_contig10:40441..40938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size498
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig10.72.1prot_P-lacustris_contig10.72.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig10 40454..40828 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815256.0131044-UTR-P-lacustris_contig10:40440..404531622815256.0131044-UTR-P-lacustris_contig10:40440..40453Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig10 40441..40453 +
1693493433.5247316-UTR-P-lacustris_contig10:40440..404531693493433.5247316-UTR-P-lacustris_contig10:40440..40453Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig10 40441..40453 +
1622815256.03945-UTR-P-lacustris_contig10:40828..409381622815256.03945-UTR-P-lacustris_contig10:40828..40938Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig10 40829..40938 +
1693493433.559163-UTR-P-lacustris_contig10:40828..409381693493433.559163-UTR-P-lacustris_contig10:40828..40938Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig10 40829..40938 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815256.027977-CDS-P-lacustris_contig10:40453..408281622815256.027977-CDS-P-lacustris_contig10:40453..40828Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig10 40454..40828 +
1693493433.5497823-CDS-P-lacustris_contig10:40453..408281693493433.5497823-CDS-P-lacustris_contig10:40453..40828Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig10 40454..40828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig10.72.1

>prot_P-lacustris_contig10.72.1 ID=prot_P-lacustris_contig10.72.1|Name=mRNA_P-lacustris_contig10.72.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=125bp
MLDSCFVAPLPKIQESSGTRGHLRALVRRPGSALNRPALGDSIDIPSEKS
SSLARISDRHYSPSSPDSCRLSRFRQRSSQTAGNTPKAEDNTNLKTLQRV
VRQLFFHPSGRAMVPTCKPFRPDS*
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mRNA from alignment at P-lacustris_contig10:40441..40938+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig10.72.1 ID=mRNA_P-lacustris_contig10.72.1|Name=mRNA_P-lacustris_contig10.72.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=498bp|location=Sequence derived from alignment at P-lacustris_contig10:40441..40938+ (Pleurocladia lacustris SAG_25_93)
CCCCCCTCACATCATGCTTGATTCATGTTTCGTGGCCCCCTTACCCAAAA
TTCAAGAGAGCAGCGGCACGAGAGGCCACCTTCGTGCGCTTGTCCGCCGA
CCTGGGAGCGCACTAAATCGACCAGCGCTTGGAGACAGCATAGATATACC
ATCAGAGAAGTCATCCTCACTCGCCCGAATTTCGGATCGGCACTACAGCC
CAAGTTCCCCAGACAGCTGCCGACTGTCTCGTTTCCGCCAGAGATCCTCT
CAGACAGCTGGAAATACCCCCAAAGCTGAAGATAACACCAACTTAAAAAC
ACTTCAGCGCGTTGTCCGCCAACTTTTTTTTCATCCAAGCGGTCGTGCGA
TGGTGCCAACATGTAAGCCATTCCGCCCAGATTCCTGAGCTGCCCGGCCG
AATTTTGGATCACCACTACAGCCGGAGCTGTTGACGAATAACTGCACATC
GCGGTGAGAATCCGGGCCTATGGGGCTCCGCAACATCGTGACGTTTGG
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Coding sequence (CDS) from alignment at P-lacustris_contig10:40441..40938+

>mRNA_P-lacustris_contig10.72.1 ID=mRNA_P-lacustris_contig10.72.1|Name=mRNA_P-lacustris_contig10.72.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=750bp|location=Sequence derived from alignment at P-lacustris_contig10:40441..40938+ (Pleurocladia lacustris SAG_25_93)
ATGCTTGATTCATGTTTCGTGGCCCCCTTACCCAAAATTCAAGAGAGCAG
CGGCACGAGAGGCCACCTTCGTGCGCTTGTCCGCCGACCTGGGAGCGCAC
TAAATCGACCAGCGCTTGGAGACAGCATAGATATACCATCAGAGAAGTCA
TCCTCACTCGCCCGAATTTCGGATCGGCACTACAGCCCAAGTTCCCCAGA
CAGCTGCCGACTGTCTCGTTTCCGCCAGAGATCCTCTCAGACAGCTGGAA
ATACCCCCAAAGCTGAAGATAACACCAACTTAAAAACACTTCAGCGCGTT
GTCCGCCAACTTTTTTTTCATCCAAGCGGTCGTGCGATGGTGCCAACATG
TAAGCCATTCCGCCCAGATTCCTGAATGCTTGATTCATGTTTCGTGGCCC
CCTTACCCAAAATTCAAGAGAGCAGCGGCACGAGAGGCCACCTTCGTGCG
CTTGTCCGCCGACCTGGGAGCGCACTAAATCGACCAGCGCTTGGAGACAG
CATAGATATACCATCAGAGAAGTCATCCTCACTCGCCCGAATTTCGGATC
GGCACTACAGCCCAAGTTCCCCAGACAGCTGCCGACTGTCTCGTTTCCGC
CAGAGATCCTCTCAGACAGCTGGAAATACCCCCAAAGCTGAAGATAACAC
CAACTTAAAAACACTTCAGCGCGTTGTCCGCCAACTTTTTTTTCATCCAA
GCGGTCGTGCGATGGTGCCAACATGTAAGCCATTCCGCCCAGATTCCTGA
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