mRNA_P-lacustris_contig1.25.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1.25.1
Unique NamemRNA_P-lacustris_contig1.25.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1.25.1 vs. uniprot
Match: A0A6H5JNZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNZ6_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 5.590e-32
Identity = 88/177 (49.72%), Postives = 106/177 (59.89%), Query Frame = 1 
Query:  376 ETARKSSHLAPPILDMDKQSGVTTVSLVEQVGE-SSLDRSGQGPIASGGQEEEDXXXXEGTVDGXXXXXXXXQEKLKPE------------RRGTQRFARQNTGIGLKAGVLTGDRKKKETPFHVPRTMYMGHPVGSSAAELLERQQHRLGEVKIRQKEVSRLLELVMKHNALSSGS 867
            E     S L PP L+MDK SG+TT SL+ Q  E SSLD S  G  A  G E+ED    +G  DG        QE    E            RRGT+RF RQ TGI +  GV    +KKK+ PFHVP TMYMGHPVGS AAE LERQ+HRL +VK R++EV+ LL+LV+ HN  ++GS
Sbjct:  182 EAVPAKSQLPPPTLEMDKHSGMTTFSLMRQDEEGSSLDASDAGKAAVRG-EQEDGQYNKG--DGAVEILAQEQEGFDGEGESEEPVGTTFARRGTRRFVRQGTGISMADGVSPEGKKKKKAPFHVPPTMYMGHPVGSMAAEFLERQKHRLVDVKNRREEVAGLLKLVVDHNPRNTGS 355
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JNZ6_9PHAE5.590e-3249.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1contigP-lacustris_contig1:242217..243085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size870
Cds size867
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815246.656321-CDS-P-lacustris_contig1:242216..2430831622815246.656321-CDS-P-lacustris_contig1:242216..243083Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1 242217..243083 +
1693493427.0174317-CDS-P-lacustris_contig1:242216..2430831693493427.0174317-CDS-P-lacustris_contig1:242216..243083Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1 242217..243083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1.25.1prot_P-lacustris_contig1.25.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1 242217..243083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1.25.1

>prot_P-lacustris_contig1.25.1 ID=prot_P-lacustris_contig1.25.1|Name=mRNA_P-lacustris_contig1.25.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=289bp
HPEWRLVFSTGMAKVVPTDGSKDGESAKGGKDSHLRKPPEGQPVDCCDTD
GATDQEANNGVSLGGVVGTTDIAAVSPAKPADSEEKVPADTIKVAKPPSG
EDEELKRQDSPAVLIMAEGGGGGGLETARKSSHLAPPILDMDKQSGVTTV
SLVEQVGESSLDRSGQGPIASGGQEEEDEEENEGTVDGQEKGEEGGQEKL
KPERRGTQRFARQNTGIGLKAGVLTGDRKKKETPFHVPRTMYMGHPVGSS
AAELLERQQHRLGEVKIRQKEVSRLLELVMKHNALSSGS
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mRNA from alignment at P-lacustris_contig1:242217..243085+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1.25.1 ID=mRNA_P-lacustris_contig1.25.1|Name=mRNA_P-lacustris_contig1.25.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=869bp|location=Sequence derived from alignment at P-lacustris_contig1:242217..243085+ (Pleurocladia lacustris SAG_25_93)
CACCCAGAGTGGAGGCTCGTGTTTTCGACTGGCATGGCCAAAGTAGTGCC
AACGGACGGGAGCAAGGACGGTGAATCTGCGAAAGGAGGCAAAGATTCCC
ATTTACGCAAGCCGCCAGAAGGTCAGCCCGTGGACTGCTGTGATACCGAT
GGAGCAACTGATCAAGAGGCGAACAATGGTGTGTCTCTCGGAGGAGTCGT
CGGTACCACGGACATCGCTGCTGTAAGCCCTGCCAAACCCGCGGATAGTG
AGGAGAAAGTGCCGGCGGACACCATAAAAGTTGCAAAACCCCCTAGCGGT
GAGGATGAGGAGTTGAAGCGGCAGGATTCACCGGCGGTACTGATTATGGC
GGAAGGAGGAGGAGGAGGAGGGTTGGAAACAGCACGTAAGAGCTCGCATC
TCGCACCACCCATCTTAGACATGGACAAGCAAAGCGGGGTGACGACCGTT
TCACTAGTGGAGCAAGTTGGGGAGTCGAGCCTGGACAGGTCTGGTCAGGG
CCCAATCGCAAGCGGCGGGCAAGAAGAAGAAGACGAGGAAGAAAACGAAG
GTACGGTAGACGGACAAGAGAAAGGCGAGGAAGGAGGTCAAGAAAAATTA
AAGCCTGAGCGGCGAGGCACGCAAAGGTTTGCTCGTCAAAACACCGGCAT
CGGCTTGAAGGCTGGTGTGTTGACGGGGGACCGAAAGAAGAAAGAAACAC
CGTTTCATGTACCGCGGACCATGTACATGGGACACCCCGTGGGGAGCTCA
GCGGCGGAGTTGTTGGAACGACAGCAGCACAGGCTGGGAGAAGTAAAGAT
CAGGCAGAAGGAAGTGTCCAGGTTGTTGGAGCTGGTCATGAAGCACAACG
CTCTTAGCAGCGGTTCGGC
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Coding sequence (CDS) from alignment at P-lacustris_contig1:242217..243085+

>mRNA_P-lacustris_contig1.25.1 ID=mRNA_P-lacustris_contig1.25.1|Name=mRNA_P-lacustris_contig1.25.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1734bp|location=Sequence derived from alignment at P-lacustris_contig1:242217..243085+ (Pleurocladia lacustris SAG_25_93)
CACCCAGAGTGGAGGCTCGTGTTTTCGACTGGCATGGCCAAAGTAGTGCC
AACGGACGGGAGCAAGGACGGTGAATCTGCGAAAGGAGGCAAAGATTCCC
ATTTACGCAAGCCGCCAGAAGGTCAGCCCGTGGACTGCTGTGATACCGAT
GGAGCAACTGATCAAGAGGCGAACAATGGTGTGTCTCTCGGAGGAGTCGT
CGGTACCACGGACATCGCTGCTGTAAGCCCTGCCAAACCCGCGGATAGTG
AGGAGAAAGTGCCGGCGGACACCATAAAAGTTGCAAAACCCCCTAGCGGT
GAGGATGAGGAGTTGAAGCGGCAGGATTCACCGGCGGTACTGATTATGGC
GGAAGGAGGAGGAGGAGGAGGGTTGGAAACAGCACGTAAGAGCTCGCATC
TCGCACCACCCATCTTAGACATGGACAAGCAAAGCGGGGTGACGACCGTT
TCACTAGTGGAGCAAGTTGGGGAGTCGAGCCTGGACAGGTCTGGTCAGGG
CCCAATCGCAAGCGGCGGGCAAGAAGAAGAAGACGAGGAAGAAAACGAAG
GTACGGTAGACGGACAAGAGAAAGGCGAGGAAGGAGGTCAAGAAAAATTA
AAGCCTGAGCGGCGAGGCACGCAAAGGTTTGCTCGTCAAAACACCGGCAT
CGGCTTGAAGGCTGGTGTGTTGACGGGGGACCGAAAGAAGAAAGAAACAC
CGTTTCATGTACCGCGGACCATGTACATGGGACACCCCGTGGGGAGCTCA
GCGGCGGAGTTGTTGGAACGACAGCAGCACAGGCTGGGAGAAGTAAAGAT
CAGGCAGAAGGAAGTGTCCAGGTTGTTGGAGCTGGTCATGAAGCACAACG
CTCTTAGCAGCGGTTCGCACCCAGAGTGGAGGCTCGTGTTTTCGACTGGC
ATGGCCAAAGTAGTGCCAACGGACGGGAGCAAGGACGGTGAATCTGCGAA
AGGAGGCAAAGATTCCCATTTACGCAAGCCGCCAGAAGGTCAGCCCGTGG
ACTGCTGTGATACCGATGGAGCAACTGATCAAGAGGCGAACAATGGTGTG
TCTCTCGGAGGAGTCGTCGGTACCACGGACATCGCTGCTGTAAGCCCTGC
CAAACCCGCGGATAGTGAGGAGAAAGTGCCGGCGGACACCATAAAAGTTG
CAAAACCCCCTAGCGGTGAGGATGAGGAGTTGAAGCGGCAGGATTCACCG
GCGGTACTGATTATGGCGGAAGGAGGAGGAGGAGGAGGGTTGGAAACAGC
ACGTAAGAGCTCGCATCTCGCACCACCCATCTTAGACATGGACAAGCAAA
GCGGGGTGACGACCGTTTCACTAGTGGAGCAAGTTGGGGAGTCGAGCCTG
GACAGGTCTGGTCAGGGCCCAATCGCAAGCGGCGGGCAAGAAGAAGAAGA
CGAGGAAGAAAACGAAGGTACGGTAGACGGACAAGAGAAAGGCGAGGAAG
GAGGTCAAGAAAAATTAAAGCCTGAGCGGCGAGGCACGCAAAGGTTTGCT
CGTCAAAACACCGGCATCGGCTTGAAGGCTGGTGTGTTGACGGGGGACCG
AAAGAAGAAAGAAACACCGTTTCATGTACCGCGGACCATGTACATGGGAC
ACCCCGTGGGGAGCTCAGCGGCGGAGTTGTTGGAACGACAGCAGCACAGG
CTGGGAGAAGTAAAGATCAGGCAGAAGGAAGTGTCCAGGTTGTTGGAGCT
GGTCATGAAGCACAACGCTCTTAGCAGCGGTTCG
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