mRNA_P-lacustris_contig1.19.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1.19.1
Unique NamemRNA_P-lacustris_contig1.19.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1.19.1 vs. uniprot
Match: D8LNJ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNJ5_ECTSI)

HSP 1 Score: 537 bits (1384), Expect = 1.310e-182
Identity = 342/538 (63.57%), Postives = 385/538 (71.56%), Query Frame = 1 
Query:   13 QEPSFKDRFNKLGAGVGERFAAFGNIIQDHSSKNVASVSTPTSKVAESFSSAEPPRETALIAPQGGAATSGPSTVGSRQRPAMEYFQEYEVTFSSKPKFSLVEGANGKGAVVSWDASSGDAGSALGSADGGGEH--VPSSGAAVVAVSGESVVDKKLVDVLALLSXXXXXXXXXXXAD--KDDGE-ISGKVPPDSTDGD--AFVVRFREKMKPQQETGSAGGEVFRNRMKAMATGLGNLFQVKETAGSVVRDGSVGDPVGGAGGAASAAASE--VPDAFVLTFSAESGTIEDLPFTMAEVVGGAGVIVSAVRDDHAQFLIAPEEAGVVTAVTAGVAAAGIKDGV---SGRNDGPDVNAGVLAPGSLILRVAGQSVEGKELERVKKVLETAAAEHSAVKILFRRAPSIYRARIAAELALEQSKMPQVHVGTWQPLLKRRAGVSL---GXXXXXXXXXXXVISLGYGGEEWEDVQTTMARAHRFVNGFRSVGIRVDV--LSMQTVSLPRNVKSAYAGTFEGRPSSFQQAVRLWFSFPDER 1575
            +EPSFKDRFNKLGAGVGERFAAFG+IIQ+H SK+ A+  +PTS VAE FS+ +   E A +APQGG A++GP      Q+ AMEYFQEYEVTF++KP FSLVEGA+G+GAVVSWD      G+A  SAD GG    VP SGAAV+AVSGESV +KKL DVL LL             D  KD+G+ +S +VPPD         VVRFREKMKPQ ETGSAGGEVFRN+MKAMATG+GNLFQ KETAGS VRDGS     GGAG +A        VPDAF LTFS  S T+EDLPFTMAEVVGG GVIV+AVRDD+A+ LI  EEAGVV+A TAGVA            GRNDGP+   G+L PG+LILRVAGQ+VEGK + RV+K LETAA EHSAVKILFRRAP IYRA +AAELALEQSK+PQVHVGTWQPLLKRRAGV++   G   XXXXXXXX+I LGY                    G R VG R         TV+LPRNVKSAYAGTFEGRPSSFQQA RLWFSFP ER
Sbjct:   66 EEPSFKDRFNKLGAGVGERFAAFGHIIQEHGSKSAAASGSPTSGVAEKFSAPDATSELAQVAPQGGTASAGPPASEHPQQQAMEYFQEYEVTFTTKPTFSLVEGADGRGAVVSWDT-----GTAPPSADSGGAPAPVPPSGAAVIAVSGESVAEKKLADVLELLEAAGKDLDTGREEDPAKDNGDKLSVEVPPDPAGXXXXGLVVRFREKMKPQHETGSAGGEVFRNKMKAMATGIGNLFQAKETAGSAVRDGS-NVSAGGAGPSAXXXXXXXAVPDAFPLTFSTGSETVEDLPFTMAEVVGGLGVIVAAVRDDYAEHLIVAEEAGVVSAGTAGVAXXXXXXXXXXXGGRNDGPEE--GLLVPGALILRVAGQNVEGKGMGRVRKALETAAVEHSAVKILFRRAPPIYRASVAAELALEQSKVPQVHVGTWQPLLKRRAGVTMSGDGENGXXXXXXXXIIGLGY--------------------GRRGVGGRPGDHGTGAPTVALPRNVKSAYAGTFEGRPSSFQQAARLWFSFPGER 575
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNJ5_ECTSI1.310e-18263.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1contigP-lacustris_contig1:166448..168283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue2.1e-06
Seed eggNOG ortholog36331.EPrPI00000016882
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Source PGD
EggNOG OGs1MHF2@121069,2CUJ5@1,2S4E6@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_000440.1
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons2
Model size1575
Cds size1575
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815249.8646553-CDS-P-lacustris_contig1:166447..1668581622815249.8646553-CDS-P-lacustris_contig1:166447..166858Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1 166448..166858 -
1693493429.3274355-CDS-P-lacustris_contig1:166447..1668581693493429.3274355-CDS-P-lacustris_contig1:166447..166858Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1 166448..166858 -
1622815249.875309-CDS-P-lacustris_contig1:167119..1682831622815249.875309-CDS-P-lacustris_contig1:167119..168283Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1 167120..168283 -
1693493429.353831-CDS-P-lacustris_contig1:167119..1682831693493429.353831-CDS-P-lacustris_contig1:167119..168283Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1 167120..168283 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1.19.1prot_P-lacustris_contig1.19.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1 166448..168283 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1.19.1

>prot_P-lacustris_contig1.19.1 ID=prot_P-lacustris_contig1.19.1|Name=mRNA_P-lacustris_contig1.19.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=525bp
MFAIQEPSFKDRFNKLGAGVGERFAAFGNIIQDHSSKNVASVSTPTSKVA
ESFSSAEPPRETALIAPQGGAATSGPSTVGSRQRPAMEYFQEYEVTFSSK
PKFSLVEGANGKGAVVSWDASSGDAGSALGSADGGGEHVPSSGAAVVAVS
GESVVDKKLVDVLALLSGGGGGRPSSAAADKDDGEISGKVPPDSTDGDAF
VVRFREKMKPQQETGSAGGEVFRNRMKAMATGLGNLFQVKETAGSVVRDG
SVGDPVGGAGGAASAAASEVPDAFVLTFSAESGTIEDLPFTMAEVVGGAG
VIVSAVRDDHAQFLIAPEEAGVVTAVTAGVAAAGIKDGVSGRNDGPDVNA
GVLAPGSLILRVAGQSVEGKELERVKKVLETAAAEHSAVKILFRRAPSIY
RARIAAELALEQSKMPQVHVGTWQPLLKRRAGVSLGGGGENGGGGGGVIS
LGYGGEEWEDVQTTMARAHRFVNGFRSVGIRVDVLSMQTVSLPRNVKSAY
AGTFEGRPSSFQQAVRLWFSFPDER
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mRNA from alignment at P-lacustris_contig1:166448..168283-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1.19.1 ID=mRNA_P-lacustris_contig1.19.1|Name=mRNA_P-lacustris_contig1.19.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1836bp|location=Sequence derived from alignment at P-lacustris_contig1:166448..168283- (Pleurocladia lacustris SAG_25_93)
ATGTTTGCCATCCAGGAGCCTTCCTTCAAGGACCGGTTCAATAAGCTCGG
GGCGGGGGTCGGCGAGAGGTTCGCCGCTTTCGGAAACATTATCCAAGATC
ATAGCAGCAAGAACGTGGCATCAGTCTCAACACCGACCTCCAAGGTAGCA
GAGAGCTTCTCCTCCGCGGAGCCTCCGAGAGAAACGGCACTGATTGCACC
GCAGGGTGGTGCTGCTACTTCCGGCCCATCCACCGTCGGAAGCCGCCAAC
GGCCAGCGATGGAGTACTTCCAGGAGTACGAGGTAACTTTTTCGAGCAAG
CCCAAGTTTTCCCTTGTGGAAGGGGCCAACGGGAAGGGGGCTGTGGTGTC
ATGGGACGCGAGCAGCGGTGACGCCGGTTCTGCGCTCGGCTCTGCGGACG
GTGGCGGCGAACATGTCCCTTCATCCGGCGCCGCTGTCGTTGCCGTGTCT
GGCGAGTCGGTGGTTGACAAGAAGCTAGTAGACGTGCTCGCTCTCCTGTC
GGGCGGCGGCGGAGGGAGGCCGTCAAGCGCAGCCGCCGACAAGGACGACG
GTGAGATTTCGGGGAAAGTTCCTCCGGATTCGACAGACGGCGATGCGTTT
GTTGTTCGCTTCAGGGAAAAGATGAAGCCGCAGCAAGAGACGGGCTCGGC
TGGCGGGGAAGTCTTCCGCAACAGGATGAAGGCCATGGCCACGGGACTCG
GCAACCTGTTCCAGGTGAAGGAGACCGCCGGTAGCGTTGTGAGGGATGGA
TCCGTCGGCGATCCCGTCGGCGGCGCCGGCGGCGCTGCTTCTGCAGCGGC
GTCAGAGGTGCCCGATGCTTTCGTCCTAACGTTTTCTGCCGAGAGCGGCA
CGATAGAGGACTTGCCGTTCACGATGGCCGAGGTTGTCGGTGGTGCTGGA
GTAATCGTGTCGGCGGTGAGAGACGACCACGCGCAGTTCTTGATTGCCCC
AGAAGAGGCCGGGGTTGTGACTGCGGTGACGGCGGGTGTGGCCGCAGCAG
GGATCAAGGATGGGGTATCGGGGCGAAATGACGGGCCTGATGTGAATGCG
GGTGTGCTGGCTCCTGGCTCGTTGATACTGCGGGTTGCGGGTCAAAGCGT
GGAGGGAAAGGAGCTGGAGCGAGTGAAGAAGGTGTTGGAGACGGCGGCGG
CGGAGCACTCGGCGGTGAGCGTGAAGTGTTGCGCCTTGATGGACGTAGTG
AGTTATCGTTGAGAGTTGGCGGGTGATTGGCGGACGTTTTGAAAGAGCCT
TGTCCTCAGGCGCACTTCCCAGCGTTTGCAACGCTGCCTTACACCCGACA
CGCATAAGCTCTTGATTCAGCTGAACCTCCGTCTCACGTTTCTCACGTGC
TGAGTGCCGACCTTCGTTTCCCGCCCCCCCTTCCCCCCCTGCGTGCCTGA
CCGCCTGCTTCCCCGACCGTATCAGGTAAAAATTCTCTTCAGGCGCGCCC
CCTCGATCTACCGAGCAAGGATCGCAGCCGAGCTGGCGTTGGAACAGTCC
AAGATGCCTCAGGTTCACGTCGGAACGTGGCAACCTCTGCTAAAGCGCCG
CGCAGGCGTTTCGCTAGGCGGGGGTGGGGAGAACGGTGGTGGCGGCGGCG
GCGTTATTAGCCTTGGTTACGGCGGGGAGGAGTGGGAAGACGTACAGACT
ACCATGGCGCGGGCGCATCGTTTCGTGAACGGGTTCCGATCGGTCGGGAT
TCGCGTGGACGTGCTGAGTATGCAGACGGTGTCCTTGCCGCGCAATGTCA
AGTCGGCGTACGCGGGAACGTTCGAGGGCCGGCCATCGTCTTTCCAGCAG
GCGGTCCGACTGTGGTTTTCATTCCCCGACGAGCGA
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Coding sequence (CDS) from alignment at P-lacustris_contig1:166448..168283-

>mRNA_P-lacustris_contig1.19.1 ID=mRNA_P-lacustris_contig1.19.1|Name=mRNA_P-lacustris_contig1.19.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=3150bp|location=Sequence derived from alignment at P-lacustris_contig1:166448..168283- (Pleurocladia lacustris SAG_25_93)
ATGTTTGCCATCCAGGAGCCTTCCTTCAAGGACCGGTTCAATAAGCTCGG
GGCGGGGGTCGGCGAGAGGTTCGCCGCTTTCGGAAACATTATCCAAGATC
ATAGCAGCAAGAACGTGGCATCAGTCTCAACACCGACCTCCAAGGTAGCA
GAGAGCTTCTCCTCCGCGGAGCCTCCGAGAGAAACGGCACTGATTGCACC
GCAGGGTGGTGCTGCTACTTCCGGCCCATCCACCGTCGGAAGCCGCCAAC
GGCCAGCGATGGAGTACTTCCAGGAGTACGAGGTAACTTTTTCGAGCAAG
CCCAAGTTTTCCCTTGTGGAAGGGGCCAACGGGAAGGGGGCTGTGGTGTC
ATGGGACGCGAGCAGCGGTGACGCCGGTTCTGCGCTCGGCTCTGCGGACG
GTGGCGGCGAACATGTCCCTTCATCCGGCGCCGCTGTCGTTGCCGTGTCT
GGCGAGTCGGTGGTTGACAAGAAGCTAGTAGACGTGCTCGCTCTCCTGTC
GGGCGGCGGCGGAGGGAGGCCGTCAAGCGCAGCCGCCGACAAGGACGACG
GTGAGATTTCGGGGAAAGTTCCTCCGGATTCGACAGACGGCGATGCGTTT
GTTGTTCGCTTCAGGGAAAAGATGAAGCCGCAGCAAGAGACGGGCTCGGC
TGGCGGGGAAGTCTTCCGCAACAGGATGAAGGCCATGGCCACGGGACTCG
GCAACCTGTTCCAGGTGAAGGAGACCGCCGGTAGCGTTGTGAGGGATGGA
TCCGTCGGCGATCCCGTCGGCGGCGCCGGCGGCGCTGCTTCTGCAGCGGC
GTCAGAGGTGCCCGATGCTTTCGTCCTAACGTTTTCTGCCGAGAGCGGCA
CGATAGAGGACTTGCCGTTCACGATGGCCGAGGTTGTCGGTGGTGCTGGA
GTAATCGTGTCGGCGGTGAGAGACGACCACGCGCAGTTCTTGATTGCCCC
AGAAGAGGCCGGGGTTGTGACTGCGGTGACGGCGGGTGTGGCCGCAGCAG
GGATCAAGGATGGGGTATCGGGGCGAAATGACGGGCCTGATGTGAATGCG
GGTGTGCTGGCTCCTGGCTCGTTGATACTGCGGGTTGCGGGTCAAAGCGT
GGAGGGAAAGGAGCTGGAGCGAGTGAAGAAGGTGTTGGAGACGGCGGCGG
CGGAGCACTCGGCGATGTTTGCCATCCAGGAGCCTTCCTTCAAGGACCGG
TTCAATAAGCTCGGGGCGGGGGTCGGCGAGAGGTTCGCCGCTTTCGGAAA
CATTATCCAAGATCATAGCAGCAAGAACGTGGCATCAGTCTCAACACCGA
CCTCCAAGGTAGCAGAGAGCTTCTCCTCCGCGGAGCCTCCGAGAGAAACG
GCACTGATTGCACCGCAGGGTGGTGCTGCTACTTCCGGCCCATCCACCGT
CGGAAGCCGCCAACGGCCAGCGATGGAGTACTTCCAGGAGTACGAGGTAA
CTTTTTCGAGCAAGCCCAAGTTTTCCCTTGTGGAAGGGGCCAACGGGAAG
GGGGCTGTGGTGTCATGGGACGCGAGCAGCGGTGACGCCGGTTCTGCGCT
CGGCTCTGCGGACGGTGGCGGCGAACATGTCCCTTCATCCGGCGCCGCTG
TCGTTGCCGTGTCTGGCGAGTCGGTGGTTGACAAGAAGCTAGTAGACGTG
CTCGCTCTCCTGTCGGGCGGCGGCGGAGGGAGGCCGTCAAGCGCAGCCGC
CGACAAGGACGACGGTGAGATTTCGGGGAAAGTTCCTCCGGATTCGACAG
ACGGCGATGCGTTTGTTGTTCGCTTCAGGGAAAAGATGAAGCCGCAGCAA
GAGACGGGCTCGGCTGGCGGGGAAGTCTTCCGCAACAGGATGAAGGCCAT
GGCCACGGGACTCGGCAACCTGTTCCAGGTGAAGGAGACCGCCGGTAGCG
TTGTGAGGGATGGATCCGTCGGCGATCCCGTCGGCGGCGCCGGCGGCGCT
GCTTCTGCAGCGGCGTCAGAGGTGCCCGATGCTTTCGTCCTAACGTTTTC
TGCCGAGAGCGGCACGATAGAGGACTTGCCGTTCACGATGGCCGAGGTTG
TCGGTGGTGCTGGAGTAATCGTGTCGGCGGTGAGAGACGACCACGCGCAG
TTCTTGATTGCCCCAGAAGAGGCCGGGGTTGTGACTGCGGTGACGGCGGG
TGTGGCCGCAGCAGGGATCAAGGATGGGGTATCGGGGCGAAATGACGGGC
CTGATGTGAATGCGGGTGTGCTGGCTCCTGGCTCGTTGATACTGCGGGTT
GCGGGTCAAAGCGTGGAGGGAAAGGAGCTGGAGCGAGTGAAGAAGGTGTT
GGAGACGGCGGCGGCGGAGCACTCGGCGGTAAAAATTCTCTTCAGGCGCG
CCCCCTCGATCTACCGAGCAAGGATCGCAGCCGAGCTGGCGTTGGAACAG
TCCAAGATGCCTCAGGTTCACGTCGGAACGTGGCAACCTCTGCTAAAGCG
CCGCGCAGGCGTTTCGCTAGGCGGGGGTGGGGAGAACGGTGGTGGCGGCG
GCGGCGTTATTAGCCTTGGTTACGGCGGGGAGGAGTGGGAAGACGTACAG
ACTACCATGGCGCGGGCGCATCGTTTCGTGAACGGGTTCCGATCGGTCGG
GATTCGCGTGGACGTGCTGAGTATGCAGACGGTGTCCTTGCCGCGCAATG
TCAAGTCGGCGTACGCGGGAACGTTCGAGGGCCGGCCATCGTCTTTCCAG
CAGGCGGTCCGACTGTGGTTTTCATTCCCCGACGAGCGAGTAAAAATTCT
CTTCAGGCGCGCCCCCTCGATCTACCGAGCAAGGATCGCAGCCGAGCTGG
CGTTGGAACAGTCCAAGATGCCTCAGGTTCACGTCGGAACGTGGCAACCT
CTGCTAAAGCGCCGCGCAGGCGTTTCGCTAGGCGGGGGTGGGGAGAACGG
TGGTGGCGGCGGCGGCGTTATTAGCCTTGGTTACGGCGGGGAGGAGTGGG
AAGACGTACAGACTACCATGGCGCGGGCGCATCGTTTCGTGAACGGGTTC
CGATCGGTCGGGATTCGCGTGGACGTGCTGAGTATGCAGACGGTGTCCTT
GCCGCGCAATGTCAAGTCGGCGTACGCGGGAACGTTCGAGGGCCGGCCAT
CGTCTTTCCAGCAGGCGGTCCGACTGTGGTTTTCATTCCCCGACGAGCGA
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