mRNA_P-lacustris_contig1.13.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1.13.1 vs. uniprot
Match: D8LNZ7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNZ7_ECTSI) HSP 1 Score: 763 bits (1970), Expect = 1.020e-260 Identity = 526/764 (68.85%), Postives = 585/764 (76.57%), Query Frame = 3
Query: 531 MRGTRDA-AGGGLFSPGVLQHLNKENVINTPARTPDRKRKLGSAARS---------GFEVVDRESEDSTRLSAAVQERPQVSQLAADLSRAESEAARFKEEARQIQRALDDRNELVRQLQAIKASTKQRYAALLQSHEEVNKELALLRTQQLEDEISDTRGSGSLEQLKATVENLETNNELLREERGSLQTRLAKRDAAVTAMKADLAVAAKRDEGLREEVNRLQRELDTASREAAALAAANGASAQWSLEKEALEARISELESQAASSGRRCVELVAERDEIAEESACREKEHGLAVTALRNEIQGLHRRTTADLGDWRQRYRHEVWARKALEGQIERLVGASESVTRVIEKHAVLEASLQEACGLLSQAVLDEERGRGERGIEEDSSAERIVEGVLEHLLGRVFQATLASGVHKE---DEEGRREREADRGLSREASANLGEELERLTADMKTLRSFGLDEAQTFLEQAKSLEAELEVVREQHAASVSELEAARAKSEQEVGRLASLLERGHMEREELKLRLETAANELAXXXXXXXXXXXXXXXXXXXXXXDAEARRAAAEKQRMEXXXXXXXXXXXXXXSGRRAYAQKAEALEEENRXXXXXXXGLSAQASALKARAAAREAASPTPRSPVLPAIPVISVQEWEAKEQQLKDMETRLSEVVSENQELEKKIEIATAEGQQPSPRSEERQARLVALETEASRPILAFRLRQNVSAERERVARAKEAERLMKKYALRNSTLCEKKVKDLQRRLAKATGQAAT 2783
M G RDA +GGGLFSPGVLQ L+KENV+NTPARTPDR+RKLGSA R GF+V ++ E STR S A QE SQLA DLSRAESE AR KEEARQ +RALD+RNE+V QL+A KA+TKQRY ALLQSHEE NKEL LLRTQ+L+ S GSG +EQL+ATVENLETNNELLREERGSLQTRLAKRDAAV+AMKADLA A +RD+ LR++ +RL+ ELD AAA A+ GA AQW L+KEALEARI ELE+QAASSGRRCVELVAERD +AEESA REKEH V +LR+E+QGLHRRTTADLGDWRQRYR EV A++ALEGQ+ERLV ASESVTRVIEKHAVLEASLQEA GLLSQAVL EERG A R+VEGVLEHLLGRVFQAT SG +E DEEGR+EREADR LS+EAS NLGEELE+LTADM+ LRSFGLDEA TFLEQAKSLE ELE VRE+HAASVS+LEAARA SE+EV RLA +LERG EREELKLRLETAANEL XXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXX RRAYAQKAEA+E ENR GL+ QASALKA+AAAREA SP P +SV +WEAK+Q+L++ME RLS VVS+NQELE+K+E AEGQ+ S SEERQA++ ALE EAE LMKKYALRNSTLCEKKVKDLQRRLAKATG+AAT
Sbjct: 1 MPGARDAGSGGGLFSPGVLQQLDKENVVNTPARTPDRRRKLGSAIRGTSSAAAAGVGFKVFQQQGEASTRTSVAGQE---ASQLATDLSRAESELARLKEEARQARRALDERNEMVEQLKASKANTKQRYTALLQSHEEANKELELLRTQKLDS--SGDSGSGIVEQLRATVENLETNNELLREERGSLQTRLAKRDAAVSAMKADLAAATQRDDALRQKADRLREELD-----AAAAASKAGAQAQWDLDKEALEARIGELETQAASSGRRCVELVAERDLLAEESARREKEHASTVASLRSEMQGLHRRTTADLGDWRQRYRQEVGAKRALEGQLERLVAASESVTRVIEKHAVLEASLQEAYGLLSQAVLAEERGXXXXXX----XAARVVEGVLEHLLGRVFQATATSGDEEEEGEDEEGRKEREADRRLSKEASDNLGEELEKLTADMEALRSFGLDEAHTFLEQAKSLETELEAVREKHAASVSDLEAARAHSEREVERLAGMLERGQGEREELKLRLETAANELVINVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRAYAQKAEAMEGENRALHEKLEGLATQASALKAKAAAREATSP----------PSVSVTDWEAKQQELEEMEARLSTVVSKNQELERKVETVKAEGQEASLGSEERQAQVAALEAXXXXXXXXXXXXXXXXXX------XXEAEWLMKKYALRNSTLCEKKVKDLQRRLAKATGKAAT 734 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1.13.1 >prot_P-lacustris_contig1.13.1 ID=prot_P-lacustris_contig1.13.1|Name=mRNA_P-lacustris_contig1.13.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=883bp MNLMQYAVCNPIIKESLTERRLEKLDEIQKGRRERMRASSATDAEQAWRSback to top mRNA from alignment at P-lacustris_contig1:88394..98190- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1.13.1 ID=mRNA_P-lacustris_contig1.13.1|Name=mRNA_P-lacustris_contig1.13.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=9797bp|location=Sequence derived from alignment at P-lacustris_contig1:88394..98190- (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1:88394..98190- >mRNA_P-lacustris_contig1.13.1 ID=mRNA_P-lacustris_contig1.13.1|Name=mRNA_P-lacustris_contig1.13.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=5298bp|location=Sequence derived from alignment at P-lacustris_contig1:88394..98190- (Pleurocladia lacustris SAG_25_93)back to top |