prot_P-wetherbeei_contig16320.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig16320.1.1
Unique Nameprot_P-wetherbeei_contig16320.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length257
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16320.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 165..255
e-value: 4.9E-25
score: 90.6
coord: 60..164
e-value: 1.7E-16
score: 62.6
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 121..161
e-value: 0.0016
score: 18.4
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 169..217
e-value: 3.0E-13
score: 49.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 171..204
e-value: 1.6E-6
score: 25.9
coord: 206..240
e-value: 1.0E-8
score: 32.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 204..238
score: 11.169622
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 98..132
score: 8.659485
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 169..203
score: 11.39981
NoneNo IPR availablePANTHERPTHR47942TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 71..249

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16320contigP-wetherbeei_contig16320:502..1272 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16320.1.1mRNA_P-wetherbeei_contig16320.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig16320 334..1286 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig16320.1.1 ID=prot_P-wetherbeei_contig16320.1.1|Name=mRNA_P-wetherbeei_contig16320.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=257bp
MSVCGPTARLLAGRSSVIRSFLSHGYSHQRPFSDGAAAAATPVIDEAVAP
AAPVFPERPQPRRTPAWQIEIGALCRDGRWDGVLAALRECRPGESPPTVS
AFLFALRAAADAGRAAEAVVLLDEMRSRGRRPNVYAYTAAIKACGRGGAP
DRALMLLGSMWETDGVMADVVCYNACLGALARAGDAAAALALLREMQRGG
VAPTVVTYSTCIDACARRGDAAGARALLQEMQAAGIVPNTFVFTAVIKVS
AVTMQY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat