mRNA_P-wetherbeei_contig16320.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16320.1.1
Unique NamemRNA_P-wetherbeei_contig16320.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16320.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16320contigP-wetherbeei_contig16320:334..1286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size953
Hectar predicted targeting categorymitochondrion
Exons1
Cds size771
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186083.4159317-UTR-P-wetherbeei_contig16320:333..5011683186083.4159317-UTR-P-wetherbeei_contig16320:333..501Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16320 334..501 +
1683186083.4471345-UTR-P-wetherbeei_contig16320:1272..12861683186083.4471345-UTR-P-wetherbeei_contig16320:1272..1286Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig16320 1273..1286 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186083.43699-CDS-P-wetherbeei_contig16320:501..12721683186083.43699-CDS-P-wetherbeei_contig16320:501..1272Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16320 502..1272 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16320.1.1prot_P-wetherbeei_contig16320.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16320 502..1272 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16320.1.1

>prot_P-wetherbeei_contig16320.1.1 ID=prot_P-wetherbeei_contig16320.1.1|Name=mRNA_P-wetherbeei_contig16320.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=257bp
MSVCGPTARLLAGRSSVIRSFLSHGYSHQRPFSDGAAAAATPVIDEAVAP
AAPVFPERPQPRRTPAWQIEIGALCRDGRWDGVLAALRECRPGESPPTVS
AFLFALRAAADAGRAAEAVVLLDEMRSRGRRPNVYAYTAAIKACGRGGAP
DRALMLLGSMWETDGVMADVVCYNACLGALARAGDAAAALALLREMQRGG
VAPTVVTYSTCIDACARRGDAAGARALLQEMQAAGIVPNTFVFTAVIKVS
AVTMQY*
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mRNA from alignment at P-wetherbeei_contig16320:334..1286+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16320.1.1 ID=mRNA_P-wetherbeei_contig16320.1.1|Name=mRNA_P-wetherbeei_contig16320.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=953bp|location=Sequence derived from alignment at P-wetherbeei_contig16320:334..1286+ (Phaeothamnion wetherbeei SAG_119_79)
AACAAGCTTTTCTTGCTTTTCCATGTTCCAATTGCCACTGCCTACAATTT
CTTCGAGCGAAACAAAATTTGCGCAGCTTGGGACGTCCAGGATCTTCCGC
CGAAAGCGAGGCGTCAACATGATACGAAAGAACCGCGCCAACCATCAAAA
CAAGTAGAAGGAAGAGAAATGTCTGTCTGCGGTCCCACTGCCCGGCTTTT
AGCGGGCCGGTCCTCTGTAATACGTTCATTCCTCAGTCATGGGTATTCGC
ATCAGAGACCATTTAGCGACGGCGCAGCGGCTGCTGCCACTCCCGTTATT
GACGAAGCCGTTGCTCCAGCCGCTCCGGTTTTCCCCGAACGGCCGCAACC
GCGGCGAACACCGGCGTGGCAGATCGAAATAGGCGCCCTCTGCCGCGATG
GCCGCTGGGACGGCGTCCTGGCCGCGCTGCGGGAGTGCCGCCCGGGCGAG
TCGCCGCCGACAGTCTCAGCCTTCCTCTTCGCGCTGCGCGCCGCGGCCGA
CGCGGGCCGCGCCGCCGAGGCCGTCGTGCTCCTCGACGAGATGCGAAGCC
GCGGCCGCCGGCCCAACGTCTACGCCTACACGGCGGCGATTAAGGCCTGC
GGCCGCGGCGGTGCGCCCGACCGTGCCCTGATGCTCCTCGGCTCCATGTG
GGAGACGGACGGCGTAATGGCCGACGTCGTATGCTATAATGCCTGCCTCG
GCGCCCTCGCCCGCGCCGGCGACGCCGCTGCAGCGCTGGCGCTGCTGCGA
GAGATGCAGCGGGGCGGCGTCGCGCCGACCGTCGTGACGTACAGCACCTG
CATCGACGCCTGTGCCCGGCGCGGCGACGCCGCTGGCGCGCGCGCGCTGC
TCCAGGAGATGCAGGCGGCCGGTATAGTCCCGAACACATTCGTCTTCACG
GCGGTGATCAAAGTGAGCGCGGTGACAATGCAATACTAGCAGGTTTGATT
TTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16320:334..1286+

>mRNA_P-wetherbeei_contig16320.1.1 ID=mRNA_P-wetherbeei_contig16320.1.1|Name=mRNA_P-wetherbeei_contig16320.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=771bp|location=Sequence derived from alignment at P-wetherbeei_contig16320:334..1286+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTGTCTGCGGTCCCACTGCCCGGCTTTTAGCGGGCCGGTCCTCTGT
AATACGTTCATTCCTCAGTCATGGGTATTCGCATCAGAGACCATTTAGCG
ACGGCGCAGCGGCTGCTGCCACTCCCGTTATTGACGAAGCCGTTGCTCCA
GCCGCTCCGGTTTTCCCCGAACGGCCGCAACCGCGGCGAACACCGGCGTG
GCAGATCGAAATAGGCGCCCTCTGCCGCGATGGCCGCTGGGACGGCGTCC
TGGCCGCGCTGCGGGAGTGCCGCCCGGGCGAGTCGCCGCCGACAGTCTCA
GCCTTCCTCTTCGCGCTGCGCGCCGCGGCCGACGCGGGCCGCGCCGCCGA
GGCCGTCGTGCTCCTCGACGAGATGCGAAGCCGCGGCCGCCGGCCCAACG
TCTACGCCTACACGGCGGCGATTAAGGCCTGCGGCCGCGGCGGTGCGCCC
GACCGTGCCCTGATGCTCCTCGGCTCCATGTGGGAGACGGACGGCGTAAT
GGCCGACGTCGTATGCTATAATGCCTGCCTCGGCGCCCTCGCCCGCGCCG
GCGACGCCGCTGCAGCGCTGGCGCTGCTGCGAGAGATGCAGCGGGGCGGC
GTCGCGCCGACCGTCGTGACGTACAGCACCTGCATCGACGCCTGTGCCCG
GCGCGGCGACGCCGCTGGCGCGCGCGCGCTGCTCCAGGAGATGCAGGCGG
CCGGTATAGTCCCGAACACATTCGTCTTCACGGCGGTGATCAAAGTGAGC
GCGGTGACAATGCAATACTAG
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