mRNA_P-wetherbeei_contig1632.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1632.3.1
Unique NamemRNA_P-wetherbeei_contig1632.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1632.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1632contigP-wetherbeei_contig1632:3067..4494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1429
Hectar predicted targeting categoryother localisation
Exons1
Cds size801
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186083.325428-UTR-P-wetherbeei_contig1632:3066..36931683186083.325428-UTR-P-wetherbeei_contig1632:3066..3693Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1632 3067..3693 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186083.3340125-CDS-P-wetherbeei_contig1632:3693..44941683186083.3340125-CDS-P-wetherbeei_contig1632:3693..4494Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1632 3694..4494 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1632.3.1prot_P-wetherbeei_contig1632.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1632 3694..4494 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1632.3.1

>prot_P-wetherbeei_contig1632.3.1 ID=prot_P-wetherbeei_contig1632.3.1|Name=mRNA_P-wetherbeei_contig1632.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=267bp
MLDVRDQQAPWREGMTRAGALGKQTVASAPPATAAPPTDNMDVDDVDSVA
ATLLAVGPRLEALAAANATSRSASPAPASASWPASASWPSCHNNGGNGDT
CSCRGGSSGTASGGPVSDDDEGGATSVAALSSHECTPVPGGGSGGGDDDA
AASAGEEDNTASAHAWSPVPSATPVARATELGAAEGVAAVAAATVKRPSL
LGSLADLARQELMTLEEKPSASPARAASPVGGLFELAGAAAAAAVPVASH
SVSDAGMASISPKATST
back to top

mRNA from alignment at P-wetherbeei_contig1632:3067..4494+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1632.3.1 ID=mRNA_P-wetherbeei_contig1632.3.1|Name=mRNA_P-wetherbeei_contig1632.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1428bp|location=Sequence derived from alignment at P-wetherbeei_contig1632:3067..4494+ (Phaeothamnion wetherbeei SAG_119_79)
CACACAGATTGAAATCCAGCTCTGGGTGCGTTGTACGCAGTGCTCTTCGC
GAAAGGACGACCCCGGCGACATTCAGAGAAGGTGAGAGATCACGGTTTTC
CCCCTCTTTGAATCGGGGACAGGGAAGGGTTGTATGTAGGGGCAGAGAGG
TTCTTGGTGGGTCAGGAAACCGGAACTGCGGAAAAGAACTCGCAATCTGG
AGGCTCAGATGCGTGCCGTCGAGGGTGGGAGAAGGACCCCGGTAGCACTT
TTCCGGTACAAAATGAGTACGTTAGAGTGAAAGGTGAAAGAGCGGAGTGA
GGGAACGAATGGTAGCTTTGGAGAGCAGTGGAGTTCACTCATCATGCACG
TACGAGTTGTGCATTTCAGTTCATCTCTCTCCTCTTTCTCTTCGGATATG
GCGATGTGGGGTTCTCCACAGGGTTTCTCCTTTTCCGCGGCTTCAGATGA
CAGCGCGCATCAGAATATTTCGTCCAGCTGCTCGTCTCAGCCATGCAACT
CGCATTCTTAACGAGGTTACTCCTACGTTGTCTATGAAATGGCCATCTCC
AACGGGCAGGTTAGGGCACATTTTCTTTTTTGAGGTGTAGAACAGGCGTG
CGCTGCTGCTGCTTCAGCGCCGGGAACATGCTTGATGTGCGCGATCAGCA
GGCGCCGTGGCGAGAAGGTATGACGAGAGCGGGGGCGCTCGGGAAGCAGA
CGGTGGCATCAGCGCCGCCTGCGACGGCGGCTCCTCCAACCGACAACATG
GATGTCGACGACGTCGACAGCGTTGCGGCGACACTCCTCGCCGTCGGCCC
GCGGCTGGAGGCCCTGGCGGCGGCCAATGCGACGTCCCGCTCCGCATCGC
CAGCGCCGGCGTCAGCGTCCTGGCCGGCGTCAGCATCGTGGCCGTCATGC
CACAACAACGGCGGCAACGGTGATACATGCAGCTGCCGAGGAGGTAGCAG
TGGGACGGCCTCCGGCGGCCCTGTCAGCGACGACGACGAGGGCGGTGCAA
CGTCCGTCGCCGCCCTTTCCAGCCACGAATGCACGCCGGTGCCGGGTGGC
GGCAGCGGCGGCGGTGACGACGATGCGGCCGCTTCAGCCGGAGAGGAGGA
CAATACTGCTTCGGCGCATGCGTGGTCGCCGGTGCCGTCCGCGACGCCGG
TAGCAAGAGCAACGGAGTTGGGGGCAGCCGAGGGGGTGGCGGCTGTGGCG
GCGGCAACTGTAAAGCGACCGTCGTTGCTGGGGTCATTGGCGGATCTGGC
GCGGCAAGAGCTCATGACTCTCGAGGAGAAGCCGTCGGCGTCGCCGGCAC
GCGCCGCGAGCCCCGTCGGCGGGCTCTTTGAGCTGGCGGGGGCCGCAGCG
GCGGCCGCCGTGCCAGTGGCATCTCATTCCGTCAGCGACGCCGGCATGGC
ATCGATCTCTCCAAAGGCGACTTCGACC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1632:3067..4494+

>mRNA_P-wetherbeei_contig1632.3.1 ID=mRNA_P-wetherbeei_contig1632.3.1|Name=mRNA_P-wetherbeei_contig1632.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=801bp|location=Sequence derived from alignment at P-wetherbeei_contig1632:3067..4494+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTGATGTGCGCGATCAGCAGGCGCCGTGGCGAGAAGGTATGACGAG
AGCGGGGGCGCTCGGGAAGCAGACGGTGGCATCAGCGCCGCCTGCGACGG
CGGCTCCTCCAACCGACAACATGGATGTCGACGACGTCGACAGCGTTGCG
GCGACACTCCTCGCCGTCGGCCCGCGGCTGGAGGCCCTGGCGGCGGCCAA
TGCGACGTCCCGCTCCGCATCGCCAGCGCCGGCGTCAGCGTCCTGGCCGG
CGTCAGCATCGTGGCCGTCATGCCACAACAACGGCGGCAACGGTGATACA
TGCAGCTGCCGAGGAGGTAGCAGTGGGACGGCCTCCGGCGGCCCTGTCAG
CGACGACGACGAGGGCGGTGCAACGTCCGTCGCCGCCCTTTCCAGCCACG
AATGCACGCCGGTGCCGGGTGGCGGCAGCGGCGGCGGTGACGACGATGCG
GCCGCTTCAGCCGGAGAGGAGGACAATACTGCTTCGGCGCATGCGTGGTC
GCCGGTGCCGTCCGCGACGCCGGTAGCAAGAGCAACGGAGTTGGGGGCAG
CCGAGGGGGTGGCGGCTGTGGCGGCGGCAACTGTAAAGCGACCGTCGTTG
CTGGGGTCATTGGCGGATCTGGCGCGGCAAGAGCTCATGACTCTCGAGGA
GAAGCCGTCGGCGTCGCCGGCACGCGCCGCGAGCCCCGTCGGCGGGCTCT
TTGAGCTGGCGGGGGCCGCAGCGGCGGCCGCCGTGCCAGTGGCATCTCAT
TCCGTCAGCGACGCCGGCATGGCATCGATCTCTCCAAAGGCGACTTCGAC
C
back to top