mRNA_P-wetherbeei_contig10470.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10470.2.1
Unique NamemRNA_P-wetherbeei_contig10470.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10470.2.1 vs. uniprot
Match: A0A146HFR8_MYCCL (Polyprotein (Fragment) n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146HFR8_MYCCL)

HSP 1 Score: 99.8 bits (247), Expect = 7.880e-23
Identity = 51/92 (55.43%), Postives = 60/92 (65.22%), Query Frame = 1
Query:    4 LWLRRLARGLGLGVTAPTPIHEDNQRCSDIATNLFSERRVKHIDIKFHIVRERVESGEVVLVPTQRKDQLADLLTKPLPGPRTRFLREQILG 279
            +WLR+LA  LG+ V APTPIH DNQ     A N     R KHID++ H VRERV S EV LV    +D LAD+LTKPLP P+   LR+Q LG
Sbjct:  286 IWLRQLASELGISVEAPTPIHIDNQSAIKFAENPMFHARSKHIDMRHHFVRERVASNEVKLVHCASEDNLADILTKPLPRPQFVALRDQFLG 377          
BLAST of mRNA_P-wetherbeei_contig10470.2.1 vs. uniprot
Match: A0A3S3PWI2_9ACAR (RxLR effector candidate protein-like protein (Fragment) n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3PWI2_9ACAR)

HSP 1 Score: 93.2 bits (230), Expect = 3.600e-20
Identity = 45/91 (49.45%), Postives = 60/91 (65.93%), Query Frame = 1
Query:    1 ALWLRRLARGLGLGVTAPTPIHEDNQRCSDIATNLFSERRVKHIDIKFHIVRERVESGEVVLVPTQRKDQLADLLTKPLPGPRTRFLREQI 273
            ++WLR L + LG   TAPT ++EDNQ C  I  N     R KHIDIK+H VRE+VESGEV     + K  LAD++TK +PGP+   LR+++
Sbjct:  118 SIWLRALLKELGYDQTAPTVLYEDNQSCIAITKNPKLHSRTKHIDIKYHFVREKVESGEVRFEYCESKCMLADIMTKAIPGPQFEVLRDKL 208          
BLAST of mRNA_P-wetherbeei_contig10470.2.1 vs. uniprot
Match: W7SYU7_9STRA (Putative polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7SYU7_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.870e-18
Identity = 42/93 (45.16%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    1 ALWLRRLARGLGLGVTAPTPIHEDNQRCSDIATNLFSERRVKHIDIKFHIVRERVESGEVVLVPTQRKDQLADLLTKPLPGPRTRFLREQILG 279
            A+++R+L   LG     PT I EDNQ C  +  N  + +R KHID+++H VRE+VES EV LV    + QLAD+LTKPL   R   +R +++G
Sbjct:   42 AVYIRQLLTDLGFKQDEPTVIMEDNQACIAMGNNPITHKRTKHIDVRYHFVREKVESKEVELVYIPTQHQLADILTKPLSNIRLAMIRNRMMG 134          
BLAST of mRNA_P-wetherbeei_contig10470.2.1 vs. uniprot
Match: W7U3E4_9STRA (Copia-type polyprotein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3E4_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.070e-18
Identity = 42/93 (45.16%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    1 ALWLRRLARGLGLGVTAPTPIHEDNQRCSDIATNLFSERRVKHIDIKFHIVRERVESGEVVLVPTQRKDQLADLLTKPLPGPRTRFLREQILG 279
            A+++R+L   LG     PT I EDNQ C  ++ N  + +R KHIDI++H VRE+ ES EV LV    + QLAD+LTKPL   R   +R +++G
Sbjct:  117 AVYIRQLLTDLGFKQDEPTVIMEDNQACIAMSNNPITHKRTKHIDIRYHFVREKAESKEVELVYIPTQHQLADILTKPLSNIRLAMIRNRMMG 209          
BLAST of mRNA_P-wetherbeei_contig10470.2.1 vs. uniprot
Match: A0A182G3D4_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182G3D4_AEDAL)

HSP 1 Score: 83.2 bits (204), Expect = 1.150e-17
Identity = 40/91 (43.96%), Postives = 58/91 (63.74%), Query Frame = 1
Query:    1 ALWLRRLARGLGLGVTAPTPIHEDNQRCSDIATNLFSERRVKHIDIKFHIVRERVESGEVVLVPTQRKDQLADLLTKPLPGPRTRFLREQI 273
            A+WLR L R LG  V  PT IHEDNQ C  +A +    RR+KH+D++FH V+  +++G V L+    +DQ+AD++TK LP  +   LR  +
Sbjct:  118 AIWLRGLLRDLGQRVADPTIIHEDNQACIRVAESDKPTRRMKHVDVRFHFVKNEIDAGTVRLLYVPSEDQVADVMTKGLPRIQFEKLRNML 208          
BLAST of mRNA_P-wetherbeei_contig10470.2.1 vs. uniprot
Match: W7TF74_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TF74_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.490e-17
Identity = 42/93 (45.16%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    1 ALWLRRLARGLGLGVTAPTPIHEDNQRCSDIATNLFSERRVKHIDIKFHIVRERVESGEVVLVPTQRKDQLADLLTKPLPGPRTRFLREQILG 279
            A+++R+L   LG     PT I EDNQ C  ++ N  + +R KHID++FH VR +VES EV LV    + QLAD+LTKPL   R   +R +++G
Sbjct:  213 AVYIRQLLMDLGFKQDKPTVIMEDNQACIAMSNNPITHKRTKHIDVRFHFVRGKVESKEVELVYIPTQHQLADILTKPLSSIRLAMIRNRMMG 305          
BLAST of mRNA_P-wetherbeei_contig10470.2.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.590e-17
Identity = 42/93 (45.16%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    1 ALWLRRLARGLGLGVTAPTPIHEDNQRCSDIATNLFSERRVKHIDIKFHIVRERVESGEVVLVPTQRKDQLADLLTKPLPGPRTRFLREQILG 279
            A+++R+L   LG     PT I EDNQ C  +  N  + +R KHID+++H VRE+VES EV LV    + QLAD+LTKPL   R   +R +++G
Sbjct:  618 AVYIRQLLMDLGFKQDEPTVIMEDNQACIAMGNNPITHKRTKHIDVRYHFVREKVESKEVELVYIPTQHQLADILTKPLSSIRLAMIRNRMMG 710          
BLAST of mRNA_P-wetherbeei_contig10470.2.1 vs. uniprot
Match: W7T0D1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0D1_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.600e-17
Identity = 42/93 (45.16%), Postives = 60/93 (64.52%), Query Frame = 1
Query:    1 ALWLRRLARGLGLGVTAPTPIHEDNQRCSDIATNLFSERRVKHIDIKFHIVRERVESGEVVLVPTQRKDQLADLLTKPLPGPRTRFLREQILG 279
            A+++R+L   LG     PT I EDNQ C  ++ N   ++R KHID+++H VRE+VES EV LV    + QLAD+LTKPL   R   +R +++G
Sbjct:  619 AVYIRQLLMDLGFKQDEPTVIMEDNQACIAMSNNPIIQKRTKHIDVRYHFVREKVESKEVELVYIPTQHQLADILTKPLSNIRLAMIRNRMMG 711          
BLAST of mRNA_P-wetherbeei_contig10470.2.1 vs. uniprot
Match: UPI001E1BA19B (secreted RxLR effector protein 161-like n=2 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BA19B)

HSP 1 Score: 83.2 bits (204), Expect = 1.850e-17
Identity = 42/91 (46.15%), Postives = 57/91 (62.64%), Query Frame = 1
Query:    1 ALWLRRLARGLGLGVTAPTPIHEDNQRCSDIATNLFSERRVKHIDIKFHIVRERVESGEVVLVPTQRKDQLADLLTKPLPGPRTRFLREQI 273
            A+WL+RL   LGL  T P P+  DNQ    +  N  S +R KHIDIK+H +R++ E GE+ +      +QLAD+LTKPL   R  +LRE+I
Sbjct:  141 AVWLKRLLIELGLQETNPIPLLCDNQSAVRLVRNPDSHQRTKHIDIKYHYIRDQQEGGEINISYVDTNNQLADILTKPLAAARFNWLREEI 231          
BLAST of mRNA_P-wetherbeei_contig10470.2.1 vs. uniprot
Match: A0A3S3PWW7_9ACAR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3PWW7_9ACAR)

HSP 1 Score: 85.5 bits (210), Expect = 2.130e-17
Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 1
Query:    4 LWLRRLARGLGLGVTAPTPIHEDNQRCSDIATNLFSERRVKHIDIKFHIVRERVESGEVVLVPTQRKDQLADLLTKPLPGPRTRFLREQI 273
            +WLR L + +G     PT I EDNQ C  +  +  +  R KHIDI+ H +RE+V+SG V +     ++ +AD+LTKPLPGPR + LR ++
Sbjct:  490 VWLRNLLQEIGFKQEMPTTIFEDNQACIKLTKSTKNHARTKHIDIRHHFIREKVDSGLVEIEYMSSEEMIADILTKPLPGPRFQILRAKL 579          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10470.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A146HFR8_MYCCL7.880e-2355.43Polyprotein (Fragment) n=1 Tax=Mycena chlorophos T... [more]
A0A3S3PWI2_9ACAR3.600e-2049.45RxLR effector candidate protein-like protein (Frag... [more]
W7SYU7_9STRA1.870e-1845.16Putative polyprotein n=1 Tax=Nannochloropsis gadit... [more]
W7U3E4_9STRA2.070e-1845.16Copia-type polyprotein (Fragment) n=1 Tax=Nannochl... [more]
A0A182G3D4_AEDAL1.150e-1743.96Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]
W7TF74_9STRA1.490e-1745.16Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7TJ26_9STRA1.590e-1745.16Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7T0D1_9STRA1.600e-1745.16Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
UPI001E1BA19B1.850e-1746.15secreted RxLR effector protein 161-like n=2 Tax=Da... [more]
A0A3S3PWW7_9ACAR2.130e-1743.33Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10470contigP-wetherbeei_contig10470:1721..2005 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog67593.Physo133508
PFAMsRVT_2,Retrotran_gag_2,rve
Model size285
Max annot lvl4776|Peronosporales
Hectar predicted targeting categorymitochondrion
Exons1
Evalue5.32e-16
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHHC@4776|Peronosporales
Descriptiongag-polypeptide of LTR copia-type
Cds size285
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185870.870024-CDS-P-wetherbeei_contig10470:1720..20051683185870.870024-CDS-P-wetherbeei_contig10470:1720..2005Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10470 1721..2005 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10470.2.1prot_P-wetherbeei_contig10470.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10470 1721..2005 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10470.2.1

>prot_P-wetherbeei_contig10470.2.1 ID=prot_P-wetherbeei_contig10470.2.1|Name=mRNA_P-wetherbeei_contig10470.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=95bp
ALWLRRLARGLGLGVTAPTPIHEDNQRCSDIATNLFSERRVKHIDIKFHI
VRERVESGEVVLVPTQRKDQLADLLTKPLPGPRTRFLREQILGE*
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mRNA from alignment at P-wetherbeei_contig10470:1721..2005+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10470.2.1 ID=mRNA_P-wetherbeei_contig10470.2.1|Name=mRNA_P-wetherbeei_contig10470.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig10470:1721..2005+ (Phaeothamnion wetherbeei SAG_119_79)
GCGCTCTGGCTGCGACGATTGGCGCGGGGTCTTGGGCTTGGCGTGACGGC TCCTACGCCAATCCACGAAGACAACCAGCGCTGCTCCGACATTGCCACCA ACCTCTTCAGCGAACGGCGGGTGAAGCACATCGACATCAAGTTTCACATC GTGCGGGAGCGGGTAGAGAGTGGAGAGGTAGTCTTGGTGCCCACACAGAG GAAGGACCAGCTCGCGGATCTCCTCACCAAGCCGTTACCGGGTCCCCGTA CACGTTTTTTGCGAGAACAGATTCTAGGTGAATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10470:1721..2005+

>mRNA_P-wetherbeei_contig10470.2.1 ID=mRNA_P-wetherbeei_contig10470.2.1|Name=mRNA_P-wetherbeei_contig10470.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig10470:1721..2005+ (Phaeothamnion wetherbeei SAG_119_79)
GCGCTCTGGCTGCGACGATTGGCGCGGGGTCTTGGGCTTGGCGTGACGGC
TCCTACGCCAATCCACGAAGACAACCAGCGCTGCTCCGACATTGCCACCA
ACCTCTTCAGCGAACGGCGGGTGAAGCACATCGACATCAAGTTTCACATC
GTGCGGGAGCGGGTAGAGAGTGGAGAGGTAGTCTTGGTGCCCACACAGAG
GAAGGACCAGCTCGCGGATCTCCTCACCAAGCCGTTACCGGGTCCCCGTA
CACGTTTTTTGCGAGAACAGATTCTAGGTGAATAG
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