mRNA_P-wetherbeei_contig15777.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15777.1.1
Unique NamemRNA_P-wetherbeei_contig15777.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15777.1.1 vs. uniprot
Match: A0A7S0P3P7_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P3P7_9EUKA)

HSP 1 Score: 72.4 bits (176), Expect = 4.430e-15
Identity = 29/52 (55.77%), Postives = 41/52 (78.85%), Query Frame = 1
Query:    1 GWTVTKSGRFAHTRDYVLGLAAAAGFDVVRHEEISPRMEGGRPVWGSLFILR 156
            GW +T SGR+AHT+ YV+G+AAAAG+++  + +I+PRMEG  PV G LF+ R
Sbjct:   57 GWKLTSSGRYAHTKQYVVGVAAAAGYELYSYRKITPRMEGDSPVQGHLFVFR 108          
BLAST of mRNA_P-wetherbeei_contig15777.1.1 vs. uniprot
Match: A0A0M0JDA6_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JDA6_9EUKA)

HSP 1 Score: 64.7 bits (156), Expect = 8.260e-11
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 1
Query:    1 GWTVTKSGRFAHTRDYVLGLAAAAG-FDVVRHEEISPRMEGGRPVWGSLFILRR 159
            GW +  SGRFAHT+ YV+  AAA G F+++ +EEI+PRME G PV G LF   R
Sbjct:  287 GWRLRTSGRFAHTKAYVVATAAATGNFELIAYEEITPRMENGVPVQGHLFTFAR 340          
BLAST of mRNA_P-wetherbeei_contig15777.1.1 vs. uniprot
Match: R1G1C3_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1G1C3_EMIHU)

HSP 1 Score: 64.3 bits (155), Expect = 1.230e-10
Identity = 28/51 (54.90%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    1 GWTVTKSGRFAHTRDYVLGLAAAAGFDVVRHEEISPRMEGGRPVWGSLFIL 153
            GW +  SGRFAHT++YV+  AAAAG+ ++ +EE++PR+E G PV G LF L
Sbjct:  315 GWRLLPSGRFAHTKEYVVREAAAAGYRLIAYEEMTPRVEKGVPVRGHLFTL 365          
BLAST of mRNA_P-wetherbeei_contig15777.1.1 vs. uniprot
Match: B8C5Z1_THAPS (Methyltransf_25 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5Z1_THAPS)

HSP 1 Score: 60.5 bits (145), Expect = 2.950e-9
Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 1
Query:    1 GWTVTKSGRFAHTRDYVLGLAAAAGFDVVRHEEISPRMEGGRPVWGSLFIL 153
            GW +  SGR+AH++ YV+ +A  AG+ ++ +EEI PRME G PV G LF L
Sbjct:  534 GWKLQPSGRYAHSKSYVVKVAKEAGYRLIGYEEIVPRMEKGEPVQGHLFQL 584          
BLAST of mRNA_P-wetherbeei_contig15777.1.1 vs. uniprot
Match: A0A7S2M4W1_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M4W1_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 5.510e-9
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 1
Query:    4 WTVTKSGRFAHTRDYVLGLAAAAGFDVVRHEEISPRMEGGRPVWGSLF 147
            W + KSGR+AH++ YV+  AA AG+ +V ++EI+PR E G PV G LF
Sbjct:  515 WKLQKSGRYAHSKSYVVNTAANAGYKLVAYDEITPRYEKGEPVKGQLF 562          
BLAST of mRNA_P-wetherbeei_contig15777.1.1 vs. uniprot
Match: A0A7S2IC40_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IC40_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.030e-8
Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 1
Query:    1 GWTVTKSGRFAHTRDYVLGLAAAAGFDVVRHEEISPRMEGGRPVWGSLFIL 153
            G+ + +SGRFAH++DYV+  A   G+DV  +EEI+PRME G  V G LF+ 
Sbjct:  393 GYRLLESGRFAHSKDYVINTAIDMGYDVSFYEEITPRMEKGEAVKGHLFMF 443          
BLAST of mRNA_P-wetherbeei_contig15777.1.1 vs. uniprot
Match: A0A7S4SZQ1_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SZQ1_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.250e-7
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    1 GWTVTKSGRFAHTRDYVLGLAAAAGFDVVRHEEISPRMEGGRPVWGSLFIL 153
            G+ + +SGRFAH++DYV+  A + G+ +  +EEI PRME G  V G LF+ 
Sbjct:  377 GYRLQESGRFAHSKDYVIDTATSKGYKISFYEEIIPRMEKGEEVRGHLFMF 427          
BLAST of mRNA_P-wetherbeei_contig15777.1.1 vs. uniprot
Match: A0A0G4H644_VITBC (Methyltransf_12 domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4H644_VITBC)

HSP 1 Score: 55.1 bits (131), Expect = 2.350e-7
Identity = 26/56 (46.43%), Postives = 33/56 (58.93%), Query Frame = 1
Query:    1 GWTVTKSGRFAHTRDYVLGLAAAAGFDVVRHEEISPRMEGGRPVWGSLFILRREAD 168
            G+ V  +GRFAHTR+YV+      GF  +  E I PR E G PV G LF+LR +  
Sbjct:  467 GYQVQTTGRFAHTREYVVREGGRWGFSAMYGERIYPRFEYGEPVKGLLFVLRYDGQ 522          
BLAST of mRNA_P-wetherbeei_contig15777.1.1 vs. uniprot
Match: A0A7S3XSZ3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSZ3_HETAK)

HSP 1 Score: 54.3 bits (129), Expect = 4.340e-7
Identity = 22/52 (42.31%), Postives = 33/52 (63.46%), Query Frame = 1
Query:    4 WTVTKSGRFAHTRDYVLGLAAAAGFDVVRHEEISPRMEGGRPVWGSLFILRR 159
            W +  SGRFAH + YV  LA   G     + E++PR+EGG+P+ G LF+ ++
Sbjct:  325 WKLQPSGRFAHKKSYVDQLALRNGLIAAEYFEMTPRLEGGKPIAGQLFVFQK 376          
BLAST of mRNA_P-wetherbeei_contig15777.1.1 vs. uniprot
Match: A0A7S4N2H0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N2H0_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 9.700e-7
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 1
Query:    4 WTVTKSGRFAHTRDYVLGLAAAAGFD-VVRHEEISPRMEGGRPVWGSLF 147
            W +  SGRFAH++ YV+ +A  AG+D ++ +EEI PRME G  V G +F
Sbjct:  211 WKLLPSGRFAHSKSYVVRVAKEAGYDRLIGYEEIVPRMENGEEVEGHMF 259          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15777.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A7S0P3P7_9EUKA4.430e-1555.77Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A0M0JDA6_9EUKA8.260e-1155.56Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
R1G1C3_EMIHU1.230e-1054.90Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
B8C5Z1_THAPS2.950e-950.98Methyltransf_25 domain-containing protein n=1 Tax=... [more]
A0A7S2M4W1_9STRA5.510e-952.08Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2IC40_9STRA1.030e-850.98Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7S4SZQ1_9STRA1.250e-747.06Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A0G4H644_VITBC2.350e-746.43Methyltransf_12 domain-containing protein n=2 Tax=... [more]
A0A7S3XSZ3_HETAK4.340e-742.31Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4N2H0_9STRA9.700e-748.98Hypothetical protein (Fragment) n=2 Tax=Odontella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15777contigP-wetherbeei_contig15777:214..384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2903.EOD39609
PFAMsMethyltransf_11,Methyltransf_25,TPR_8
Model size171
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.02e-11
EggNOG OGsCOG4976@1|root,2REQY@2759|Eukaryota
DescriptionMethyltransferase domain
Cds size171
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186067.048887-CDS-P-wetherbeei_contig15777:213..3841683186067.048887-CDS-P-wetherbeei_contig15777:213..384Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15777 214..384 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15777.1.1prot_P-wetherbeei_contig15777.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15777 214..384 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15777.1.1

>prot_P-wetherbeei_contig15777.1.1 ID=prot_P-wetherbeei_contig15777.1.1|Name=mRNA_P-wetherbeei_contig15777.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=57bp
GWTVTKSGRFAHTRDYVLGLAAAAGFDVVRHEEISPRMEGGRPVWGSLFI
LRREAD*
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mRNA from alignment at P-wetherbeei_contig15777:214..384+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15777.1.1 ID=mRNA_P-wetherbeei_contig15777.1.1|Name=mRNA_P-wetherbeei_contig15777.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=171bp|location=Sequence derived from alignment at P-wetherbeei_contig15777:214..384+ (Phaeothamnion wetherbeei SAG_119_79)
GGGTGGACGGTGACGAAGAGCGGGCGGTTCGCCCACACGCGTGACTATGT ATTGGGGCTGGCGGCGGCAGCGGGGTTCGACGTCGTGCGGCACGAGGAGA TCTCGCCGCGAATGGAGGGCGGGCGCCCCGTCTGGGGCAGCCTCTTCATC CTGAGGCGGGAAGCAGATTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15777:214..384+

>mRNA_P-wetherbeei_contig15777.1.1 ID=mRNA_P-wetherbeei_contig15777.1.1|Name=mRNA_P-wetherbeei_contig15777.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=171bp|location=Sequence derived from alignment at P-wetherbeei_contig15777:214..384+ (Phaeothamnion wetherbeei SAG_119_79)
GGGTGGACGGTGACGAAGAGCGGGCGGTTCGCCCACACGCGTGACTATGT
ATTGGGGCTGGCGGCGGCAGCGGGGTTCGACGTCGTGCGGCACGAGGAGA
TCTCGCCGCGAATGGAGGGCGGGCGCCCCGTCTGGGGCAGCCTCTTCATC
CTGAGGCGGGAAGCAGATTAA
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