mRNA_P-wetherbeei_contig15718.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15718.1.1
Unique NamemRNA_P-wetherbeei_contig15718.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15718.1.1 vs. uniprot
Match: A0A7C2LMH2_9HYPH (Tetratricopeptide repeat protein (Fragment) n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2LMH2_9HYPH)

HSP 1 Score: 115 bits (289), Expect = 1.860e-26
Identity = 104/182 (57.14%), Postives = 124/182 (68.13%), Query Frame = 1 
Query:   76 LKGLQEISANFYKSGSYLQALEFAEKALVLTIREFGPDHEKAGIQTYSLGLIAEAAGRLDDAERHYRESARIRDKVYGVDSAGTAQALEKLGGVLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIALRNYPAALGYYREAVRLLTTQRPAQTIAKSVVDDEIRRNRAAF 621
            L+ L E S  +Y+SG Y +AL  AE+AL L +R +G DHE+ G+  YSLGL AE AG L  AER+YRE+ R+R+KVYGVD    A+ALEKLGG+ +      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                  RLLT Q  +QT+ KS+V+DEIRR R  F
Sbjct:   36 LQRLVESSHAYYRSGDYARALAVAEEALPLVLRTWGSDHERTGLHYYSLGLTAEMAGNLAAAERYYRETVRVREKVYGVDGPSVAEALEKLGGIHVKQGRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLLTAQDTSQTVVKSIVEDEIRRYRDTF 217
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BLAST of mRNA_P-wetherbeei_contig15718.1.1 vs. uniprot
Match: A0A6N6T529_9HYPH (CHAT domain-containing protein n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A6N6T529_9HYPH)

HSP 1 Score: 112 bits (280), Expect = 4.160e-25
Identity = 107/190 (56.32%), Postives = 135/190 (71.05%), Query Frame = 1 
Query:   52 LSTEPSEALKGLQEISANFYKSGSYLQALEFAEKALVLTIREFGPDHEKAGIQTYSLGLIAEAAGRLDDAERHYRESARIRDKVYGVDSAGTAQALEKLGGVLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIALRNYPAALGYYREAVRLLTTQRPAQTIAKSVVDDEIRRNRAAF 621
            L+ +PS  L+ LQ+ + +FYK+G++ +AL+FAE+AL L IRE+GP+HE+  IQ YSLGLI+EAAG LD A R+Y E  RIR+KV                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     ++  AL  YREAVRLLT Q  +  + KS+V+++I+R+R  F
Sbjct:   31 LAQQPSRELQNLQDATRDFYKAGAHAEALQFAERALPLVIREYGPEHEQTSIQHYSLGLISEAAGNLDAAGRYYAECLRIREKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWAEALASYREAVRLLTGQDTSHVVVKSIVEEDIKRHRDTF 220
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BLAST of mRNA_P-wetherbeei_contig15718.1.1 vs. uniprot
Match: A0A537RDA6_9PROT (Tetratricopeptide repeat protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537RDA6_9PROT)

HSP 1 Score: 75.5 bits (184), Expect = 2.300e-12
Identity = 89/145 (61.38%), Postives = 105/145 (72.41%), Query Frame = 1 
Query:  187 DHEKAGIQTYSLGLIAEAAGRLDDAERHYRESARIRDKVYGVDSAGTAQALEKLGGVLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIALRNYPAALGYYREAVRLLTTQRPAQTIAKSVVDDEIRRNRAAF 621
            +HE+  +Q  SLGL+AE AG L  A+++Y ES RIR+KVYG +SAG AQALE       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX               +A+RL+T Q  +QTI KS+V+DEIRR+R  F
Sbjct:    1 EHEQTLVQYTSLGLVAEKAGNLVAAQKYYAESVRIREKVYGPESAGVAQALESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAIRLMTGQDTSQTIVKSIVEDEIRRSRDTF 145
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15718.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7C2LMH2_9HYPH1.860e-2657.14Tetratricopeptide repeat protein (Fragment) n=1 Ta... [more]
A0A6N6T529_9HYPH4.160e-2556.32CHAT domain-containing protein n=1 Tax=Hyphomicrob... [more]
A0A537RDA6_9PROT2.300e-1261.38Tetratricopeptide repeat protein (Fragment) n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15718contigP-wetherbeei_contig15718:247..867 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size621
Hectar predicted targeting categoryother localisation
Exons1
Cds size621
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186065.170522-CDS-P-wetherbeei_contig15718:246..8671683186065.170522-CDS-P-wetherbeei_contig15718:246..867Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15718 247..867 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15718.1.1prot_P-wetherbeei_contig15718.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15718 247..867 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15718.1.1

>prot_P-wetherbeei_contig15718.1.1 ID=prot_P-wetherbeei_contig15718.1.1|Name=mRNA_P-wetherbeei_contig15718.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=207bp
LTLATGLTPAARAQTQPLSTEPSEALKGLQEISANFYKSGSYLQALEFAE
KALVLTIREFGPDHEKAGIQTYSLGLIAEAAGRLDDAERHYRESARIRDK
VYGVDSAGTAQALEKLGGVLLRAGKTAAAEALFQRVLKIRGDLVGNQHAF
TASARADLGAVNIALRNYPAALGYYREAVRLLTTQRPAQTIAKSVVDDEI
RRNRAAF
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mRNA from alignment at P-wetherbeei_contig15718:247..867-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15718.1.1 ID=mRNA_P-wetherbeei_contig15718.1.1|Name=mRNA_P-wetherbeei_contig15718.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=621bp|location=Sequence derived from alignment at P-wetherbeei_contig15718:247..867- (Phaeothamnion wetherbeei SAG_119_79)
CTGACCCTTGCAACCGGCTTGACGCCTGCTGCTCGCGCGCAAACGCAGCC
ACTTTCGACTGAGCCGTCAGAAGCACTCAAGGGGCTGCAGGAGATTTCGG
CGAACTTCTACAAGTCGGGTTCCTATCTGCAAGCCTTGGAATTCGCCGAG
AAGGCGCTGGTTCTGACAATCAGGGAGTTCGGCCCCGACCATGAAAAGGC
GGGCATCCAAACCTATTCGCTGGGGCTCATTGCGGAAGCAGCCGGCCGGC
TCGACGATGCGGAGCGGCACTATCGGGAATCCGCCCGCATTCGCGACAAG
GTCTACGGCGTCGATAGCGCAGGCACGGCGCAGGCCCTGGAGAAGCTCGG
CGGCGTACTGCTTCGCGCCGGCAAGACCGCCGCTGCCGAGGCGCTCTTCC
AGCGCGTCCTCAAGATCCGCGGCGACCTCGTTGGCAATCAGCATGCGTTC
ACGGCGAGCGCCAGGGCGGACCTCGGCGCCGTCAACATCGCACTGAGGAA
CTATCCGGCAGCCCTCGGATACTACCGCGAGGCCGTGCGGCTGTTGACGA
CACAGCGTCCCGCGCAGACGATCGCCAAGTCGGTGGTCGATGACGAGATC
CGGCGCAACCGCGCCGCGTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15718:247..867-

>mRNA_P-wetherbeei_contig15718.1.1 ID=mRNA_P-wetherbeei_contig15718.1.1|Name=mRNA_P-wetherbeei_contig15718.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=621bp|location=Sequence derived from alignment at P-wetherbeei_contig15718:247..867- (Phaeothamnion wetherbeei SAG_119_79)
CTGACCCTTGCAACCGGCTTGACGCCTGCTGCTCGCGCGCAAACGCAGCC
ACTTTCGACTGAGCCGTCAGAAGCACTCAAGGGGCTGCAGGAGATTTCGG
CGAACTTCTACAAGTCGGGTTCCTATCTGCAAGCCTTGGAATTCGCCGAG
AAGGCGCTGGTTCTGACAATCAGGGAGTTCGGCCCCGACCATGAAAAGGC
GGGCATCCAAACCTATTCGCTGGGGCTCATTGCGGAAGCAGCCGGCCGGC
TCGACGATGCGGAGCGGCACTATCGGGAATCCGCCCGCATTCGCGACAAG
GTCTACGGCGTCGATAGCGCAGGCACGGCGCAGGCCCTGGAGAAGCTCGG
CGGCGTACTGCTTCGCGCCGGCAAGACCGCCGCTGCCGAGGCGCTCTTCC
AGCGCGTCCTCAAGATCCGCGGCGACCTCGTTGGCAATCAGCATGCGTTC
ACGGCGAGCGCCAGGGCGGACCTCGGCGCCGTCAACATCGCACTGAGGAA
CTATCCGGCAGCCCTCGGATACTACCGCGAGGCCGTGCGGCTGTTGACGA
CACAGCGTCCCGCGCAGACGATCGCCAAGTCGGTGGTCGATGACGAGATC
CGGCGCAACCGCGCCGCGTTC
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