mRNA_P-wetherbeei_contig1570.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1570.3.1
Unique NamemRNA_P-wetherbeei_contig1570.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1570.3.1 vs. uniprot
Match: D7FNI3_ECTSI (Clathrin assembly complex, medium subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNI3_ECTSI)

HSP 1 Score: 647 bits (1669), Expect = 3.720e-231
Identity = 316/430 (73.49%), Postives = 369/430 (85.81%), Query Frame = 1
Query:    1 MIKSIFIMSSAGEVMIEKHWRGVTARNVCDFFWDEVNKYPSRDAVPPIIAASSEYHLLSVYRDDTFVLAAVATDVPPLLCIEFLHRVLDILEDYFGG-FDEATVKENFSVVYQLLEEMMDNGHPLTTEPNALKAMIKPPTVMGRMVAAATGKSAVSDVLPDGTISSMPWRKAGVKYSQNEIYLDIVEEVDAIVGVNGQLVSSEVTGVIHANSRLSGIPDLLLAFVEPGVIDDCSFHPCVRYNRFERDRVVSFVPPDGQFELMRYRV--DVAGGVMPPIYCNPTISFEDDYGGSQGHIHINLGYKQSSSLIYPPRKGALLVEDVGVTIQFPKAVRTANLAVSVGTCLFDEATKVAKWTVGKLGRDKMPQMTGTLLLLGPKPEETPPMEITWKVPMASVSGLAISSLQLVNEKYRPYKGVRTLTRSGK-FQV 1278
            MI+S+FIMS  GEVMIEKHWRG+T RNVCDFFWDEVN++   +AVPPI+  +S+++L+ VYRDD F+LA    DV  L  IEFLHRVLDI+ DYFGG  DE+ +KE+FS+VYQLLEEMMDNGHPLTTEPNALKAMI+PPT   RMV AATGKS VSDVLPDGT+S+MPWRKAGVKYSQNE+YLDI+EE+DAI+ VNGQ+VSSEV+G I ANSRLSGIPD+LL F +P VIDDCSFHPCVRY RFE+DRVVSFVPPDG FELMRYRV   +   V PP+YCNPTIS+EDDYG SQGHIHI +G++  SSL +PPRKG+++VEDV VT+QFPK VRTA+L VS GTCLFDEA KVAKW +GKL +DK   MTGTL + GPKPEE+PP++++WKVPMASVSGLAI+SLQ+ NEKYRPYKGVRTLT+SGK FQV
Sbjct:    1 MIQSLFIMSKTGEVMIEKHWRGITPRNVCDFFWDEVNRHDVPEAVPPILQ-TSKHNLIHVYRDDVFLLATCTEDVSTLGVIEFLHRVLDIMGDYFGGNVDESAIKESFSLVYQLLEEMMDNGHPLTTEPNALKAMIRPPTTFVRMVTAATGKSNVSDVLPDGTVSAMPWRKAGVKYSQNEVYLDIIEELDAILNVNGQIVSSEVSGTIQANSRLSGIPDMLLVFQDPSVIDDCSFHPCVRYGRFEKDRVVSFVPPDGHFELMRYRVRDHLQMNVTPPVYCNPTISYEDDYGSSQGHIHIAVGHRHGSSLKFPPRKGSMVVEDVTVTVQFPKVVRTADLHVSSGTCLFDEALKVAKWNLGKLFKDKSATMTGTLSIQGPKPEESPPVQLSWKVPMASVSGLAITSLQVFNEKYRPYKGVRTLTKSGKNFQV 429          
BLAST of mRNA_P-wetherbeei_contig1570.3.1 vs. uniprot
Match: A0A7S2GKZ3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GKZ3_9STRA)

HSP 1 Score: 617 bits (1591), Expect = 2.290e-219
Identity = 292/426 (68.54%), Postives = 349/426 (81.92%), Query Frame = 1
Query:    1 MIKSIFIMSSAGEVMIEKHWRGVTARNVCDFFWDEVNKYPSRDAVPPIIAASSEYHLLSVYRDDTFVLAAVATDVPPLLCIEFLHRVLDILEDYFGGFDEATVKENFSVVYQLLEEMMDNGHPLTTEPNALKAMIKPPTVMGRMVAAATGKSAVSDVLPDGTISSMPWRKAGVKYSQNEIYLDIVEEVDAIVGVNGQLVSSEVTGVIHANSRLSGIPDLLLAFVEPGVIDDCSFHPCVRYNRFERDRVVSFVPPDGQFELMRYRVDVAGGVMPPIYCNPTISFEDDYGGSQGHIHINLGYKQSSSLIYPPRKGALLVEDVGVTIQFPKAVRTANLAVSVGTCLFDEATKVAKWTVGKLGRDKMPQMTGTLLLLGPKPEETPPMEITWKVPMASVSGLAISSLQLVNEKYRPYKGVRTLTRSGKFQV 1278
            MI+SIF+M+  GEVM+EKH+RG+T R VCDFFWDEVNKY  ++ VPPI+  +++Y+L+SVYRDD F++A+V  +V PLL IEFLHR++ I  +YFG  +E  +KENFS  YQLLEEMMDNG+PLTTEPNALKAMIKPP+VMGR+ AAATGKS +S+ LPDGTIS MPWRKAGVKY+QNEIY+DI+EEVDAIV  NGQ+VSSEVTG + ANSRLSGIPDL + FV+P VIDDCSFHPCVRYNRFERDRVVSFVPPDGQFELMRYRV     V  PI+C   ++   +     G I I +G K  SSLI PP+KG +L+EDV +TI FPK V+T NL  +VGTCL+DEATKVAKWT+GKL   K PQ+TGTL+L G K EE+PP+++ WKVPMASVSG+AI+SLQL NE+YRPYKGVR  TRSGKFQV
Sbjct:    1 MIQSIFVMAHTGEVMLEKHYRGMTPRTVCDFFWDEVNKYDDKEDVPPILF-NTKYYLISVYRDDLFIIASVVAEVAPLLVIEFLHRIITIFTEYFGSVEETAIKENFSTCYQLLEEMMDNGYPLTTEPNALKAMIKPPSVMGRLTAAATGKSGISEELPDGTISMMPWRKAGVKYAQNEIYMDIIEEVDAIVDKNGQIVSSEVTGYVQANSRLSGIPDLTMTFVDPDVIDDCSFHPCVRYNRFERDRVVSFVPPDGQFELMRYRVSTKANVAAPIFCQSQLNLNGETNSGNGRISITVGQKPMSSLIMPPKKGTMLIEDVALTIPFPKGVKTTNLTANVGTCLYDEATKVAKWTIGKLSTSKSPQLTGTLVLHGTKLEESPPIQLKWKVPMASVSGIAIASLQLTNERYRPYKGVRATTRSGKFQV 425          
BLAST of mRNA_P-wetherbeei_contig1570.3.1 vs. uniprot
Match: F0YKX1_AURAN (MHD domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKX1_AURAN)

HSP 1 Score: 605 bits (1561), Expect = 8.690e-215
Identity = 292/428 (68.22%), Postives = 360/428 (84.11%), Query Frame = 1
Query:    1 MIKSIFIMSSAGEVMIEKHWRGVTARNVCDFFWDEVNKYPSRDAVPPIIAASSEYHLLSVYRDDTFVLAAVATDVPPLLCIEFLHRVLDILEDYFGGFDEATVKENFSVVYQLLEEMMDNGHPLTTEPNALKAMIKPPTVMGRMVAAATGKSAVSDVLPDGTISSMPWRKAGVKYSQNEIYLDIVEEVDAIVGVNGQLVSSEVTGVIHANSRLSGIPDLLLAFVEPGVIDDCSFHPCVRYNRFERDRVVSFVPPDGQFELMRYRVDVAGGVMPPIYCNPTISFEDDYGGSQGHIHINLGYKQSSSLIYPPRKGALLVEDVGVTIQFPKAVRTANLAVSVGTCLFDEATKVAKWTVGKLG--RDKMPQMTGTLLLLGPKPEETPPMEITWKVPMASVSGLAISSLQLVNEKYRPYKGVRTLTRSGKFQV 1278
            MIKS+F+  S+GEV+IE+HWRGVT RNVCDFFWDEVNKY     VPPI+  +S+Y+L+SV RDD +V+A +A DV PLL IEFLHRV+DI  +YFG  DE ++K+NFS+VYQLLEEM+DNG+PLTTEPNALKAMIKPP+VMGR+ A ATG+S VSDVLPDGTISSMPWRK+GVKY+QN+IYLDIVEEVDAIV  NGQ+VSSEVTG I ANSRLSGIPDL L+FV+P VIDDCSFHPCVRYNRFERDRVVSFVPPDG FELMRYRV+    V  PIY  P+++  D++    G I I +G KQ+SSL+ P RKG+LL+EDV ++I FPK V+TA L+ ++GT L+DEATKVAKWTVGKL    +++PQ+TG++++ G   EE PP+++TWKVP+AS+SG+ I++LQL NE+YRPYKGVRT+T+SG+FQV
Sbjct:    1 MIKSLFVTGSSGEVLIERHWRGVTPRNVCDFFWDEVNKYDHSTEVPPILH-TSKYYLVSVSRDDIYVIATLAKDVAPLLVIEFLHRVVDIFVEYFGAADEGSIKDNFSMVYQLLEEMLDNGNPLTTEPNALKAMIKPPSVMGRLQAVATGRSNVSDVLPDGTISSMPWRKSGVKYAQNDIYLDIVEEVDAIVDRNGQVVSSEVTGAIMANSRLSGIPDLCLSFVDPEVIDDCSFHPCVRYNRFERDRVVSFVPPDGAFELMRYRVNTKANVSAPIYVTPSVTMSDEHNAGHGRIQIQIGQKQTSSLVIPNRKGSLLIEDVTLSIPFPKCVKTATLSATLGTVLYDEATKVAKWTVGKLAVTGNRVPQLTGSMVIQGAL-EELPPIQVTWKVPIASISGIQIAALQLTNERYRPYKGVRTITKSGRFQV 426          
BLAST of mRNA_P-wetherbeei_contig1570.3.1 vs. uniprot
Match: I2CP32_NANGC (AP-3 complex subunit mu n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP32_NANGC)

HSP 1 Score: 583 bits (1502), Expect = 9.440e-206
Identity = 281/430 (65.35%), Postives = 355/430 (82.56%), Query Frame = 1
Query:    1 MIKSIFIMSSAGEVMIEKHWRGVTARNVCDFFWDEVNKYPSRDAVPPIIAASSEYHLLSVYRDDTFVLAAVATDVPPLLCIEFLHRVLDILEDYFGGFDEATVKENFSVVYQLLEEMMDNGHPLTTEPNALKAMIKPPTVMGRMVAAATGK-SAVSDVLPDGTISSMPWRKAGVKYSQNEIYLDIVEEVDAIVGVNGQLVSSEVTGVIHANSRLSGIPDLLLAFVEPGVIDDCSFHPCVRYNRFERDRVVSFVPPDGQFELMRYRVDVAGGVMPPIYCNPTISFED---DYGGSQGHIHINLGYKQSSSLIYPPRKGALLVEDVGVTIQFPKAVRTANLAVSVGTCLFDEATKVAKWTVGKLGRDKMPQMTGTLLLLGPKPEETPPMEITWKVPMASVSGLAISSLQLVNEKYRPYKGVRTLTRSGKFQV 1278
            MI S+FI++  GEV+IEKHWR VT R VCDFFWDEVNKYP ++ VPP+IAAS +Y+L+++YR+D F++A++ +++PPLL IEFLHR+LDI  +YFGG +++++K+NFS VYQLLEEMMD+G+PLTTEPNALKAMI+PPT++ R+ AAATGK S VS++LPDGT+S+MPWRK+GVKY+QNEIYLDIVEE+DAIV  +GQ+VS+EV+G I ANSRLSGIPDL L FV+P VIDDCSFHPCVRYNRFERDR VSFVPPDG FELMRYRV     ++PPIYC   I +     D G S G + + LG K   SLI   +  +L  EDV VTI FPKAVRT +L  + GT L+DEA+KVA+WTVGK+ R++ PQ+TGT+LL G +PEE+P +++ WKVPMASVSGL + SLQL+NE+YRPYKGVRT+T+SG+FQV
Sbjct:    1 MIHSLFILNQHGEVLIEKHWRSVTPRAVCDFFWDEVNKYPEKEDVPPLIAAS-KYNLINIYREDLFLVASMLSEIPPLLVIEFLHRILDIFSEYFGGLEDSSIKDNFSTVYQLLEEMMDHGYPLTTEPNALKAMIRPPTLLTRLEAAATGKASGVSNLLPDGTVSNMPWRKSGVKYNQNEIYLDIVEEMDAIVDCSGQVVSAEVSGFIFANSRLSGIPDLSLLFVDPDVIDDCSFHPCVRYNRFERDRTVSFVPPDGHFELMRYRVTPRQTLVPPIYCTAQIVYSSAGKDDGVSSGRLTLTLGCKPVHSLILNNKGKSLSFEDVKVTIPFPKAVRTTHLQTNTGTVLYDEASKVARWTVGKMSRERNPQLTGTILLAGGRPEESPSIQVDWKVPMASVSGLTVLSLQLLNERYRPYKGVRTITKSGRFQV 429          
BLAST of mRNA_P-wetherbeei_contig1570.3.1 vs. uniprot
Match: A0A835YUG2_9STRA (Mu homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUG2_9STRA)

HSP 1 Score: 572 bits (1475), Expect = 2.840e-201
Identity = 288/454 (63.44%), Postives = 350/454 (77.09%), Query Frame = 1
Query:    1 MIKSIFIMSSAGEVMIEKHWRGVTARNVCDFFWDEVNKYPSRDAVPPIIAASSEYHLLSVYRDDTFVLAAVATDVPPLLCIEFLHRVLDILEDYFGGFDEATVKENFSVVYQLLEEMMDNGHPLTTEPNALKAMIKPPTVMGRMVAAATGKS-AVSDVLPDGTISSMPWRKAGVKYSQNEIYLDIVEEVDAIVGVNGQLVSSEVTGVIHANSRLSGIPDLLLAFVEPGVIDDCSFHPCVRYNRFERDRVVSFVPPDGQFELMRYRVDVA-------GGVMPPIYCNPTISFEDD---------------YGGSQGHIHINLGYKQSSSLIYPPRKGALLVEDVGVTIQFPKAVRTANLAVSVGTCLFDEATKVAKWTVGKLGRDKM----PQMTGTLLLL-GPKPEETPPMEITWKVPMASVSGLAISSLQLVNEKYRPYKGVRTLTRSGKFQV 1278
            MI+S+FIMS+AGEV+IEKHWR VT R+VCD+FWDEV K   R+ +PPI+A +  + ++SVYR D F++A V  + PPLLCIEFLHRVLDIL DY G  DE ++KE+FS+VYQLLEEMMDNGHP+TTEPNALKAMIKPPTVMGR+VAAATG+S A+S+ LPDGTIS+MPWRKAGV+Y+QNEIYLDI+EEVDAIV  NGQ+VSSEVTG I A S LSGIPDLLL F +P +IDDCSFHPCVRY RFERDRVVSFVPPDG FELMRYRV          G ++PP+YCN T+SF D                       +H+ LG +  +SL +P RK A ++EDV VT+ FP+AVRTANL+ + GT LFDEA KVA+W+VGKL    +    PQM G L+L  G + EE+P + + WKVP+AS+SGL+I+SLQL NE+Y+PYKGVRTLT+SGKF V
Sbjct:    1 MIQSLFIMSNAGEVLIEKHWREVTPRSVCDYFWDEVCKLEDREEIPPIMAVNKGF-IISVYRYDMFLIAKVQQETPPLLCIEFLHRVLDILADYLGAVDETSIKESFSLVYQLLEEMMDNGHPMTTEPNALKAMIKPPTVMGRVVAAATGRSDAISEALPDGTISAMPWRKAGVRYAQNEIYLDIIEEVDAIVAANGQVVSSEVTGSIQAVSHLSGIPDLLLTFQDPSLIDDCSFHPCVRYGRFERDRVVSFVPPDGAFELMRYRVATGAHHILPRGNIIPPLYCNATVSFSDGAXXXXXXXXXXXXXXXXXXXXRVHVGLGTRAPNSLRFPGRKTASMLEDVEVTVPFPRAVRTANLSATAGTVLFDEAAKVARWSVGKLAMGSVGQRPPQMAGALVLQPGARLEESPSIHVAWKVPVASISGLSIASLQLTNERYKPYKGVRTLTKSGKFTV 453          
BLAST of mRNA_P-wetherbeei_contig1570.3.1 vs. uniprot
Match: A0A7S2SCM0_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SCM0_9STRA)

HSP 1 Score: 567 bits (1461), Expect = 8.150e-200
Identity = 273/413 (66.10%), Postives = 333/413 (80.63%), Query Frame = 1
Query:   43 MIEKHWRGVTARNVCDFFWDEVNKYPSRDAVPPIIAASSEYHLLSVYRDDTFVLAAVATDVPPLLCIEFLHRVLDILEDYFGGFDEATVKENFSVVYQLLEEMMDNGHPLTTEPNALKAMIKPPTVMGRMVAAATGKSAVSDVLPDGTISSMPWRKAGVKYSQNEIYLDIVEEVDAIVGVNGQLVSSEVTGVIHANSRLSGIPDLLLAFVEPGVIDDCSFHPCVRYNRFERDRVVSFVPPDGQFELMRYRVDVAGGVMPPIYCNPTISFEDDYGGSQGHIHINLGYKQSSSLIYPPRKGALLVEDVGVTIQFPKAVRTANLAVSVGTCLFDEATKVAKWTVGKLGRDKMPQMTGTLLLLGP-KPEETPPMEITWKVPMASVSGLAISSLQLVNEKYRPYKGVRTLTRSGKFQV 1278
            M++ HWRG+T R VCDFFWDEVNKYP+R+ VPPI+  +S+Y+++SVYRD  FV+A    ++ PLL IEFL R+ DI  DYF G DE ++KENFS  YQLLEEMMD+G+PLTTEPNALKAMI+PPTVMG++     GKS +++ LPDGTISSMPWRKAGVKY+QNEIYLDIVEEVDAIV  NGQ+VS+EVTGV+ ANSRLSGIPDL L F +P VIDDCSFHPCVRY RFERDRVVSFVPPDGQFELMRYRV+    V  PIYC   + +ED    S G ++I +G + + SLI P +KG+L+VE+V +TI FPK V+T NL+V+ G  L+DEATKVAKWT+GK+   K PQ++GT++L G  K EE PP+++ WKVP AS+SG+AISSLQL NEKYRPYKGVRT+ RSGK+QV
Sbjct:    1 MMKMHWRGMTPRTVCDFFWDEVNKYPTREEVPPILT-TSKYYIISVYRDGLFVVATTTQEMAPLLAIEFLLRIFDIFSDYFDGADEVSIKENFSTCYQLLEEMMDHGYPLTTEPNALKAMIQPPTVMGKLAELTMGKSGITEELPDGTISSMPWRKAGVKYAQNEIYLDIVEEVDAIVDRNGQVVSTEVTGVVQANSRLSGIPDLTLTFEDPEVIDDCSFHPCVRYTRFERDRVVSFVPPDGQFELMRYRVNTKAHVSAPIYCQSQVLYED--ASSYGRVNITVGQRPTGSLIVPAKKGSLVVEEVCLTIPFPKVVKTTNLSVNYGAILYDEATKVAKWTIGKMPTSKTPQLSGTMVLQGQQKLEENPPIQLDWKVPTASISGIAISSLQLTNEKYRPYKGVRTIIRSGKYQV 410          
BLAST of mRNA_P-wetherbeei_contig1570.3.1 vs. uniprot
Match: A0A8J2SXB1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SXB1_9STRA)

HSP 1 Score: 548 bits (1413), Expect = 4.390e-192
Identity = 262/428 (61.21%), Postives = 337/428 (78.74%), Query Frame = 1
Query:    1 MIKSIFIMSSAGEVMIEKHWRGVTARNVCDFFWDEVNKYPSRDAVPPIIAASSEYHLLSVYRDDTFVLAAVATDVPPLLCIEFLHRVLDILEDYFGGFDEATVKENFSVVYQLLEEMMDNGHPLTTEPNALKAMIKPPTVMGRMVAAATGKSAVSDVLPDGTISSMPWRKAGVKYSQNEIYLDIVEEVDAIVGVNGQLVSSEVTGVIHANSRLSGIPDLLLAFVEPGVIDDCSFHPCVRYNRFERDRVVSFVPPDGQFELMRYRVDVAGGVMPPIYCNPTISFEDDYGGSQGHIHINLGYKQSSSLIYPPRKGALLVEDVGVTIQFPKAVRTANLAVSVGTCLFDEATKVAKWTVGKL--GRDKMPQMTGTLLLLGPKPEETPPMEITWKVPMASVSGLAISSLQLVNEKYRPYKGVRTLTRSGKFQV 1278
            MI S+F+ S+ GEV+IE+HWRGVT RN+CD  WDE+N    R      +  +S+++L+SV+R+D +V+A +A +VPPLL IE L RV+DI  +YFG   E  +K+NF+ VYQLLEEM+DNG+PLTTEPNALKAMI PP+VMGR+ A ATGKS VSDVLPDGTISSMPWRK+GVKY+QNEIYLDI+EEVDA+V   GQ+VSSEV+G I ANSRLSGIPDL L+F++P VI DCSFHPCVRY RFE+DRVVSFVPPDG FELMRYRV+    V  PIY  P ++  D +    G I I +G +Q+SSL+ P RK  +L+EDV ++I FPK V+TA L+ +VGT L+DEATKVA WT+G+L     K+PQ++G++++ G   E  PP+++ WKVP+ASVSG+ I++LQL NE+YRPYKGVRT+T+SG+FQ+
Sbjct:   13 MINSLFVTSATGEVLIERHWRGVTPRNICDLCWDELNPQDKRSGTLSPLLHTSKHYLVSVFREDIYVIAVLAKEVPPLLVIELLQRVVDIFVEYFGAASEGLIKDNFASVYQLLEEMLDNGNPLTTEPNALKAMIAPPSVMGRLQAVATGKSNVSDVLPDGTISSMPWRKSGVKYAQNEIYLDIIEEVDAVVDRKGQVVSSEVSGAIVANSRLSGIPDLCLSFLDPEVIKDCSFHPCVRYTRFEQDRVVSFVPPDGTFELMRYRVNTKTNVTVPIYVTPVVTMSDQHNAGYGRIQIQIGQRQTSSLVTPNRKAPMLIEDVALSIPFPKCVKTATLSATVGTVLYDEATKVASWTIGRLTPNATKVPQLSGSMIIQG-LAEGPPPIQVKWKVPVASVSGIQIAALQLKNERYRPYKGVRTITKSGRFQI 439          
BLAST of mRNA_P-wetherbeei_contig1570.3.1 vs. uniprot
Match: K3WKR4_GLOUD (MHD domain-containing protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WKR4_GLOUD)

HSP 1 Score: 526 bits (1355), Expect = 1.610e-183
Identity = 254/429 (59.21%), Postives = 335/429 (78.09%), Query Frame = 1
Query:    1 MIKSIFIMSSAGEVMIEKHWRGVTARNVCDFFWDEVNKYPSRDAVPPIIAASSEYHLLSVYRDDTFVLAAVATDVPPLLCIEFLHRVLDILEDYFGGFDEATVKENFSVVYQLLEEMMDNGHPLTTEPNALKAMIKPPTVMGRMVAAATGKSAVSDVLPDGTISSMPWRKAGVKYSQNEIYLDIVEEVDAIVGVNGQLVSSEVTGVIHANSRLSGIPDLLLAFVEPGVIDDCSFHPCVRYNRFERDRVVSFVPPDGQFELMRYRVDVAGGVMPPIYCNPTISFEDDYGGSQGHIHINLGYKQSSSLIYPPRKGALLVEDVGVTIQFPKAVRTANLAVSVGTCLFDEATKVAKWTVGKLGRDKM-PQMTGTLLLL--GPKPEETPPMEITWKVPMASVSGLAISSLQLVNEKYRPYKGVRTLTRSGKFQV 1278
            MI+S+FIM++ GEV+IEKHWRG+T+RNVCDFF +EVNKY  R+ VPPII  +S+Y+L+SV+RDD FVLA V  ++ PL  IEFLHRVL +  DYFG FDE ++K+NFS VYQLLEEM+DNG+PLTTEPNALKAM+ PP+   R+ A  +GKS VS+ LP+G IS++PWRK+GVKY+QNEIY DIVEE+DAI+  NGQ++S EV GVIH+NSRLSG+PDL + F +P VIDDCSFHPCVRY+R+ER+RV+SFVPPDGQFELM+YRV V   ++PP+YC P IS+    GGS   + + +G +   +L    +K +L +ED+ V + FPK+VRT ++    G+CLFDE+TK  KWTVGKLG+    P + GT++L      P+E P + + +KVPMA+VSGL + +L + NEKY+PYKGVRTLT++G+FQ+
Sbjct:    1 MIQSMFIMTTTGEVIIEKHWRGLTSRNVCDFFMEEVNKYKEREDVPPIIT-TSKYYLVSVFRDDLFVLAVVTNEISPLFVIEFLHRVLAVFRDYFGSFDENSMKDNFSTVYQLLEEMLDNGYPLTTEPNALKAMVAPPSTANRIAAMVSGKSRVSNTLPEGAISNIPWRKSGVKYTQNEIYFDIVEEIDAIIDGNGQMISCEVNGVIHSNSRLSGVPDLTMVFTDPSVIDDCSFHPCVRYSRYERERVISFVPPDGQFELMQYRVQVQQ-LVPPLYCQPQISYNQHGGGS---VDLQIGTRGMPTLASNSKK-SLQIEDITVDVTFPKSVRTVDVNTEHGSCLFDESTKTLKWTVGKLGKKVTNPTLKGTIILHQNAATPDEKPIVLLGFKVPMATVSGLNVETLLITNEKYKPYKGVRTLTKAGRFQI 423          
BLAST of mRNA_P-wetherbeei_contig1570.3.1 vs. uniprot
Match: A0A6V3B3W6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V3B3W6_HETAK)

HSP 1 Score: 513 bits (1321), Expect = 2.270e-178
Identity = 252/426 (59.15%), Postives = 324/426 (76.06%), Query Frame = 1
Query:    1 MIKSIFIMSSAGEVMIEKHWRGVTARNVCDFFWDEVNKYPSRDAVPPIIAASSEYHLLSVYRDDTFVLAAVATDVPPLLCIEFLHRVLDILEDYFGGFDEATVKENFSVVYQLLEEMMDNGHPLTTEPNALKAMIKPPTVMGRMVAAATGKSAVSDVLPDGTISSMPWRKAGVKYSQNEIYLDIVEEVDAIVGVNGQLVSSEVTGVIHANSRLSGIPDLLLAFVEPGVIDDCSFHPCVRYNRFERDRVVSFVPPDGQFELMRYRVDVAGGVMPPIYCNPTISFEDDYGGSQGHIHINLGYKQSSSLIYPPRKGALLVEDVGVTIQFPKAVRTANLAVSVGTCLFDEATKVAKWTVGKLGRDKMPQMTGTLLLLGPKPEETPPMEITWKVPMASVSGLAISSLQLVNEKYRPYKGVRTLTRSGKFQV 1278
            MI+S+F++   GEV +EKH+RG T+R VCDFFWDEV+K  + + VPPI+     ++LLS+YR+  ++L+ V T+VPPLL  EFLHR++D+ +DYFG  DE ++KENFS VYQLLEEMMDNG+PLTTEPNALK+MIKPPT+  R+  AATG S V + LPD   S++PWRK GVKYS NEI++D+VEEVD+I+  NGQ+VSSEV GV+  N RLSG+PDLLL F EP +IDDCSFHPCVRYNRFERD+VVSFVPPDG+FELMRYRV+    V+ P++C P I+       + G ++I+LG +  +SLI   +K    + +V V   FPK+VRTA+L  S G  ++DEA K  KW VGKL  +K   +TG L+L G +PEE+P +E+ W+VPM SVSGLAISSL + NEKY PYKGVRT+TR+GKFQV
Sbjct:    1 MIQSLFMILGTGEVFLEKHYRGKTSRQVCDFFWDEVSKRENYEEVPPIMTMG-RFYLLSIYRESMWLLSVVTTEVPPLLVFEFLHRIMDVFKDYFGTVDELSLKENFSTVYQLLEEMMDNGYPLTTEPNALKSMIKPPTMGLRLKQAATGASMVVEDLPDVASSAIPWRKTGVKYSNNEIFIDLVEEVDSILDPNGQVVSSEVQGVVEVNCRLSGMPDLLLIFTEPELIDDCSFHPCVRYNRFERDKVVSFVPPDGKFELMRYRVNTPHLVVAPLFCTPQINMPAT--SNNGSVNISLGKRTVTSLISKKKKNT--ITNVEVNFAFPKSVRTADLKGSTGEVIYDEAAKTVKWKVGKLHSNKNASLTGALMLEGARPEESPTLELGWEVPMTSVSGLAISSLNMSNEKYTPYKGVRTITRAGKFQV 421          
BLAST of mRNA_P-wetherbeei_contig1570.3.1 vs. uniprot
Match: A0A8K1FGV8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FGV8_PYTOL)

HSP 1 Score: 511 bits (1315), Expect = 1.990e-177
Identity = 245/429 (57.11%), Postives = 332/429 (77.39%), Query Frame = 1
Query:    1 MIKSIFIMSSAGEVMIEKHWRGVTARNVCDFFWDEVNKYPSRDAVPPIIAASSEYHLLSVYRDDTFVLAAVATDVPPLLCIEFLHRVLDILEDYFGGFDEATVKENFSVVYQLLEEMMDNGHPLTTEPNALKAMIKPPTVMGRMVAAATGKSAVSDVLPDGTISSMPWRKAGVKYSQNEIYLDIVEEVDAIVGVNGQLVSSEVTGVIHANSRLSGIPDLLLAFVEPGVIDDCSFHPCVRYNRFERDRVVSFVPPDGQFELMRYRVDVAGGVMPPIYCNPTISFEDDYGGSQGHIHINLGYKQSSSLIYPPRKGALLVEDVGVTIQFPKAVRTANLAVSVGTCLFDEATKVAKWTVGKLGRD-KMPQMTGTLLLLGPK--PEETPPMEITWKVPMASVSGLAISSLQLVNEKYRPYKGVRTLTRSGKFQV 1278
            MI+S+FI+++ GEV+IEKHWRG+T+RNVCDFF +EVNKY  R+ VPP+I  +S+Y+L+SV+RDD F+LA V  ++ PL  IEFLHRVL +  DYFG FDE ++K+NFS VYQLLEEM+DNG+PLTTEPNALKAM+ PP+   R+ A  +GKS VS+ LPDG +SS+PWRK+GVKY+QNEIY DIVEEVDAI+  NGQ++S EV+GVIH+NSRLSG+PDL + F +P VIDDCSFHPCVRY+R+ER+RVVSFVPPDGQFELM+YRV V   + PP+YC+P +S+ +  G   G + + +  +   +L    +K  L VED+ V + FPK+VRT ++    GTC+FDE++K  KW +GK+ +    P + G+++L      P+E P + + +KVPM++VSGL + +L + NEKY+PYKGVRTLT++G+FQ+
Sbjct:    1 MIQSMFIITTTGEVIIEKHWRGLTSRNVCDFFMEEVNKYREREDVPPVIV-TSKYYLVSVFRDDLFLLAVVTNEIAPLFVIEFLHRVLAVFRDYFGTFDENSMKDNFSTVYQLLEEMLDNGYPLTTEPNALKAMVAPPSTANRIAAMVSGKSRVSNTLPDGALSSIPWRKSGVKYTQNEIYFDIVEEVDAILDTNGQIISCEVSGVIHSNSRLSGVPDLTMVFTDPSVIDDCSFHPCVRYSRYERERVVSFVPPDGQFELMQYRVQVKQFI-PPVYCHPQVSYSEKNG--TGTLDLQIVTRGMPTLASNSKK-TLQVEDITVDVTFPKSVRTVDVNTESGTCIFDESSKTVKWNLGKMNKKGTSPSLRGSIVLHQNAGIPDEKPIVLVGFKVPMSTVSGLNVETLLITNEKYKPYKGVRTLTKAGRFQI 424          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1570.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNI3_ECTSI3.720e-23173.49Clathrin assembly complex, medium subunit n=1 Tax=... [more]
A0A7S2GKZ3_9STRA2.290e-21968.54Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
F0YKX1_AURAN8.690e-21568.22MHD domain-containing protein n=1 Tax=Aureococcus ... [more]
I2CP32_NANGC9.440e-20665.35AP-3 complex subunit mu n=1 Tax=Nannochloropsis ga... [more]
A0A835YUG2_9STRA2.840e-20163.44Mu homology domain-containing protein n=1 Tax=Trib... [more]
A0A7S2SCM0_9STRA8.150e-20066.10Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A8J2SXB1_9STRA4.390e-19261.21Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
K3WKR4_GLOUD1.610e-18359.21MHD domain-containing protein n=2 Tax=Pythiaceae T... [more]
A0A6V3B3W6_HETAK2.270e-17859.15Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8K1FGV8_PYTOL1.990e-17757.11Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1570contigP-wetherbeei_contig1570:2894..6227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FNI3
Preferred nameAP3M2
PFAMsAdap_comp_sub,Clat_adaptor_s
Model size1278
Max annot lvl2759|Eukaryota
KEGG koko:K12398,ko:K17969
KEGG Pathwayko04137,ko04139,ko04142,map04137,map04139,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005773,GO:0006605,GO:0006622,GO:0006623,GO:0006725,GO:0006726,GO:0006727,GO:0006807,GO:0006810,GO:0006886,GO:0006887,GO:0006897,GO:0006907,GO:0006928,GO:0006950,GO:0006996,GO:0007017,GO:0007018,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0007154,GO:0007220,GO:0007275,GO:0007568,GO:0008055,GO:0008088,GO:0008089,GO:0008104,GO:0008150,GO:0008152,GO:0008340,GO:0008565,GO:0009058,GO:0009267,GO:0009605,GO:0009606,GO:0009628,GO:0009629,GO:0009630,GO:0009987,GO:0009991,GO:0010256,GO:0010259,GO:0010876,GO:0010970,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0017016,GO:0017137,GO:0018130,GO:0019438,GO:0019538,GO:0019748,GO:0019899,GO:0019915,GO:0030117,GO:0030119,GO:0030123,GO:0030705,GO:0031201,GO:0031267,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032501,GO:0032502,GO:0032940,GO:0032991,GO:0033036,GO:0033060,GO:0033365,GO:0033554,GO:0034613,GO:0042440,GO:0042441,GO:0042594,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043324,GO:0043473,GO:0043474,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0044550,GO:0045184,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046903,GO:0046907,GO:0047496,GO:0048066,GO:0048069,GO:0048475,GO:0048489,GO:0048490,GO:0048856,GO:0050896,GO:0051020,GO:0051179,GO:0051234,GO:0051235,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0061462,GO:0065007,GO:0065008,GO:0070727,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072384,GO:0072594,GO:0072665,GO:0072666,GO:0080171,GO:0097479,GO:0097480,GO:0097708,GO:0098657,GO:0098796,GO:0098930,GO:0099003,GO:0099111,GO:0099514,GO:0099517,GO:0099518,GO:1901360,GO:1901362,GO:1901564,GO:1901576
Exons7
Evalue6.1e-232
EggNOG OGsKOG2740@1|root,KOG2740@2759|Eukaryota
Ec32 ortholog descriptionClathrin assembly complex, medium subunit
Ec32 orthologEc-01_005340.1
Descriptionanterograde synaptic vesicle transport
Cds size1278
COG categoryU
BRITEko00000,ko00001,ko03029,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1570.3.1prot_P-wetherbeei_contig1570.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1570 2894..6227 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186064.698713-CDS-P-wetherbeei_contig1570:2893..30521683186064.698713-CDS-P-wetherbeei_contig1570:2893..3052Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1570 2894..3052 -
1683186064.712973-CDS-P-wetherbeei_contig1570:3405..35161683186064.712973-CDS-P-wetherbeei_contig1570:3405..3516Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1570 3406..3516 -
1683186064.721439-CDS-P-wetherbeei_contig1570:3862..40301683186064.721439-CDS-P-wetherbeei_contig1570:3862..4030Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1570 3863..4030 -
1683186064.7343276-CDS-P-wetherbeei_contig1570:4320..45691683186064.7343276-CDS-P-wetherbeei_contig1570:4320..4569Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1570 4321..4569 -
1683186064.7434413-CDS-P-wetherbeei_contig1570:4823..50781683186064.7434413-CDS-P-wetherbeei_contig1570:4823..5078Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1570 4824..5078 -
1683186064.7623932-CDS-P-wetherbeei_contig1570:5507..57381683186064.7623932-CDS-P-wetherbeei_contig1570:5507..5738Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1570 5508..5738 -
1683186064.7727063-CDS-P-wetherbeei_contig1570:6122..62271683186064.7727063-CDS-P-wetherbeei_contig1570:6122..6227Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1570 6123..6227 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1570.3.1

>prot_P-wetherbeei_contig1570.3.1 ID=prot_P-wetherbeei_contig1570.3.1|Name=mRNA_P-wetherbeei_contig1570.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=426bp
MIKSIFIMSSAGEVMIEKHWRGVTARNVCDFFWDEVNKYPSRDAVPPIIA
ASSEYHLLSVYRDDTFVLAAVATDVPPLLCIEFLHRVLDILEDYFGGFDE
ATVKENFSVVYQLLEEMMDNGHPLTTEPNALKAMIKPPTVMGRMVAAATG
KSAVSDVLPDGTISSMPWRKAGVKYSQNEIYLDIVEEVDAIVGVNGQLVS
SEVTGVIHANSRLSGIPDLLLAFVEPGVIDDCSFHPCVRYNRFERDRVVS
FVPPDGQFELMRYRVDVAGGVMPPIYCNPTISFEDDYGGSQGHIHINLGY
KQSSSLIYPPRKGALLVEDVGVTIQFPKAVRTANLAVSVGTCLFDEATKV
AKWTVGKLGRDKMPQMTGTLLLLGPKPEETPPMEITWKVPMASVSGLAIS
SLQLVNEKYRPYKGVRTLTRSGKFQV
back to top

mRNA from alignment at P-wetherbeei_contig1570:2894..6227-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1570.3.1 ID=mRNA_P-wetherbeei_contig1570.3.1|Name=mRNA_P-wetherbeei_contig1570.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3334bp|location=Sequence derived from alignment at P-wetherbeei_contig1570:2894..6227- (Phaeothamnion wetherbeei SAG_119_79)
ATGATCAAATCAATTTTCATAATGAGTAGTGCCGGAGAGGTGATGATTGA GAAGCATTGGAGAGGAGTGACAGCCCGCAACGTCTGCGATTTCTTCTGGG ACGAGGTGTGTTTCTCTCAGCAAGATCCCCTCGCAATCTTTGATGTGAAT TCGCCTGTCCTTATTGGAGCTAATCTCTTGTACCCAGCCCTTTTCCCTAT GGGTGCCATAGATTTGACAAACAAACATGCAGACAATTGCATCCATCGCG GAACGGTTTTGTGCGACCTTATATCTCCGCAACGCTCGCATCAGTTTGCC TGGCATTTATGTTTTCTTTTCCATCCATATGTCTCCACAAGTTGCCATTG TCCCAACCACAGTCTCTCCATCTTCCCCCGGTCGGGTCTTCCCCCCAAGT TAACTGTACCCGATTTCGTCCTTTCCTTTCCCTCTTGCATCTCCCATTCA CAACTTCCAAAATCCCCTCCGCGCGCGCACATACCGCAGGTGAACAAGTA CCCGTCGCGTGATGCGGTACCTCCGATCATCGCGGCCAGCTCCGAATACC ACCTGCTGAGCGTCTACCGCGACGACACCTTCGTGCTAGCCGCCGTAGCC ACCGACGTGCCGCCGCTGCTGTGCATCGAATTTTTGCATCGCGTGCTGGA CATCCTCGAGGACTACTTTGGCGGCTTCGACGAGGCCACCGTCAAGGAAA ACTTCTCCGTCGTCTACCAGGTGCAGCGGCGACTATCAGCGGGCGGTTGC GATTAGCGGGCGGTTATGGGACCGGTGGAGTCTCTCGTTGCCTTTTTCGT AAGTCCTCGTCTATAATGTGACAGGGCCGGCCGGCCATATTATCTCGGTC TGTGTCCGCTCTTGTCCGCTCTTTTCTTTTTGTGCCACGGTCACTGATTT CCTAGAACGGACGCGGTTGCGCTGCGTCAATCGCTCTTCTCCTGGCCAGA TTATGCGATGTTCTTTGACTTAGGAATGGTGTGGAAAGAGGTCCACTGGA TTTAACGGAAGTCCTGACCTTTTTGTATTCACGTCATTCGTATCAATTCC AGCGTTTCCGGTGGTATAATCGGTTGCTCCATACCCAAAGACACTCACCA AAAACGCACAATTGCGCGAACGGGCAAACGGACAAACTGGTTCATGCAGC TGCTGGAGGAGATGATGGACAACGGGCACCCGCTGACGACGGAGCCCAAC GCTTTGAAGGCCATGATCAAGCCGCCGACCGTCATGGGCCGCATGGTGGC GGCGGCGACGGGCAAGTCAGCCGTCTCGGACGTGCTGCCAGACGGCACGA TATCATCAATGCCGTGGCGCAAGGCCGGCGTCAAGTACAGCCAGAATGAG ATCTATTTGGACATCGTAGAGGAAGTCGACGCTATCGTCGGCGTCAACGG ACAGGTGAGGTTGGCAAAAGTTAAAGAAGTTTTCAGCCAAAGGGAAGTGA GGAGAGTTTTTCCTGGCTTTGGTATGTTTTCGTCTCTCGGTCAATCAGAG TTGCCTTTTTCGCATCGCGCCTCCGCTGTCCCAGTTTTTAACTTTTTTGT CCCTTGCTTACGGCGATGCATGCATCCAATTGTTGAAGAAACCCACATCC AACCAAGTAAACCGGGTAAACCAATTAAATTCCTCGAACCAATCAAACCC TCTCACAGCTGGTGTCGTCCGAGGTGACGGGCGTGATCCACGCCAACTCG CGCCTCTCGGGCATCCCGGATCTGCTGCTGGCCTTCGTCGAGCCAGGCGT GATTGACGACTGCTCATTCCACCCGTGCGTCCGCTACAACCGCTTCGAGC GGGACCGCGTCGTCAGCTTCGTGCCGCCCGACGGCCAGTTCGAGCTCATG CGGTACCGCGTCGACGTGGCCGGCGGGGTCATGCCGCCTATCTACTGCAA CCCCACGGTGAGCAAAGGACCCTATGGCTGGTGCCGGTACCAGTGTCAGT GTCAGGAGGGAAATGGTCACGTCTGAAAAGACACGAGGAAAAAGCGCGGC CTTGACCGCCCTACCGGCGGTTTCGGCGGCGTTTCCGGCGGCAATTTCGC GGTGCTTGACCGGGGCCGCTTGCACTCACTGAAGTACCTCTTCTCCTTCC CTCCATCCGCCTTTCCACGCCTCTGTCCCGTCGGAATTGGAACGATTCGA CCGATCGCGAACATTCCAACATCCCAACATCCGACTGCACGGCGCAGATC TCCTTTGAGGATGACTACGGCGGGAGCCAGGGCCACATCCACATCAACCT CGGCTACAAGCAGAGCAGCTCCCTTATTTACCCGCCCAGAAAGGGCGCGC TGCTCGTCGAGGACGTCGGCGTCACCATCCAGTTCCCCAAGGCCGTCCGC ACCGCAAACCTCGCCGTTGAGTTTGGTGTTGCGCTTTGGTTGTCTCAAGG AGAATCGGAAAAGGGAGCTTTGATGGTAGACAAGGGTTTGACCTCGACCC TGCTTATTAATGACTGGAGGTTGCCGAGGTTGCCTTGTTGCGTGTTGAAA AGAGATCATATGGTCGTTCGTCCAAAAGCAAGTTACATGCGAGCGGCCAT ATTCATATTTTCTGTTCCATAACCAGATCATGGCAAGGTGATGCAATAAC CACTTCGGCACGGTTGCTTTCCGCAGGGTGCTTTTTATCTCACCACTGCT TTTCTCCCGGTCTCGTATCGGTCCCTGTCTAATTGTTGCCTGCATCAATT TTTGCCGGCAGGTGAGCGTGGGGACATGCCTGTTCGATGAGGCGACCAAG GTGGCCAAGTGGACGGTAGGAAAGCTCGGCAGGGATAAGATGCCCCAGAT GACCGGCACACTCCTGCTCCTGGTACGTGTGGTGGCAAACAGGTTCAGGA ACACTTTTGTCAGCGGCTCGGTGGCGGCTGATGGGGACGGCAGTGGCGGT GGCCATGTGCGGTGATGACAATGGCGTGACGGCATTGTTGCGGTGTGCGG CGGCGGCGGCGGCGGCGGTTTCTTCTTTTTACCCTTCGCCCTAACACCAC GAAACGCCTTCGTCAAAGGAGGCGAATGCATTTGCTCGGGTTTTCAGCTG CTAGGCCACCGCTGCCACTCTCTCGTGGCAGCCGCCTGATCTGCCCTCTT CCTACAAATGCCCCATCCTGCCGGCGTGGCTATCCTTTGATGTCCCTCGT TCCTCTTCTTGAACTTCCCCCTCAGGGGCCGAAGCCTGAGGAGACTCCGC CGATGGAGATCACGTGGAAGGTGCCGATGGCGTCCGTGTCGGGGCTTGCC ATCTCGAGCCTGCAACTCGTCAACGAGAAGTACCGCCCTTACAAGGGGGT GCGGACGCTCACGCGATCCGGAAAGTTCCAGGTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1570:2894..6227-

>mRNA_P-wetherbeei_contig1570.3.1 ID=mRNA_P-wetherbeei_contig1570.3.1|Name=mRNA_P-wetherbeei_contig1570.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1278bp|location=Sequence derived from alignment at P-wetherbeei_contig1570:2894..6227- (Phaeothamnion wetherbeei SAG_119_79)
ATGATCAAATCAATTTTCATAATGAGTAGTGCCGGAGAGGTGATGATTGA
GAAGCATTGGAGAGGAGTGACAGCCCGCAACGTCTGCGATTTCTTCTGGG
ACGAGGTGAACAAGTACCCGTCGCGTGATGCGGTACCTCCGATCATCGCG
GCCAGCTCCGAATACCACCTGCTGAGCGTCTACCGCGACGACACCTTCGT
GCTAGCCGCCGTAGCCACCGACGTGCCGCCGCTGCTGTGCATCGAATTTT
TGCATCGCGTGCTGGACATCCTCGAGGACTACTTTGGCGGCTTCGACGAG
GCCACCGTCAAGGAAAACTTCTCCGTCGTCTACCAGCTGCTGGAGGAGAT
GATGGACAACGGGCACCCGCTGACGACGGAGCCCAACGCTTTGAAGGCCA
TGATCAAGCCGCCGACCGTCATGGGCCGCATGGTGGCGGCGGCGACGGGC
AAGTCAGCCGTCTCGGACGTGCTGCCAGACGGCACGATATCATCAATGCC
GTGGCGCAAGGCCGGCGTCAAGTACAGCCAGAATGAGATCTATTTGGACA
TCGTAGAGGAAGTCGACGCTATCGTCGGCGTCAACGGACAGCTGGTGTCG
TCCGAGGTGACGGGCGTGATCCACGCCAACTCGCGCCTCTCGGGCATCCC
GGATCTGCTGCTGGCCTTCGTCGAGCCAGGCGTGATTGACGACTGCTCAT
TCCACCCGTGCGTCCGCTACAACCGCTTCGAGCGGGACCGCGTCGTCAGC
TTCGTGCCGCCCGACGGCCAGTTCGAGCTCATGCGGTACCGCGTCGACGT
GGCCGGCGGGGTCATGCCGCCTATCTACTGCAACCCCACGATCTCCTTTG
AGGATGACTACGGCGGGAGCCAGGGCCACATCCACATCAACCTCGGCTAC
AAGCAGAGCAGCTCCCTTATTTACCCGCCCAGAAAGGGCGCGCTGCTCGT
CGAGGACGTCGGCGTCACCATCCAGTTCCCCAAGGCCGTCCGCACCGCAA
ACCTCGCCGTGAGCGTGGGGACATGCCTGTTCGATGAGGCGACCAAGGTG
GCCAAGTGGACGGTAGGAAAGCTCGGCAGGGATAAGATGCCCCAGATGAC
CGGCACACTCCTGCTCCTGGGGCCGAAGCCTGAGGAGACTCCGCCGATGG
AGATCACGTGGAAGGTGCCGATGGCGTCCGTGTCGGGGCTTGCCATCTCG
AGCCTGCAACTCGTCAACGAGAAGTACCGCCCTTACAAGGGGGTGCGGAC
GCTCACGCGATCCGGAAAGTTCCAGGTG
back to top